LOCUS       NM_001111304            5864 bp    mRNA    linear   ROD 02-JUN-2024
DEFINITION  Mus musculus TBC1 domain family, member 9 (Tbc1d9), transcript
            variant 1, mRNA.
ACCESSION   NM_001111304
VERSION     NM_001111304.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 5864)
  AUTHORS   Watanabe,K., Nakayama,K., Ohta,S., Matsumoto,A., Tsuda,H. and
            Iwamoto,S.
  TITLE     ILDR2 stabilization is regulated by its interaction with GRP78
  JOURNAL   Sci Rep 11 (1), 8414 (2021)
   PUBMED   33863978
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5864)
  AUTHORS   Miller,J.A., Nathanson,J., Franjic,D., Shim,S., Dalley,R.A.,
            Shapouri,S., Smith,K.A., Sunkin,S.M., Bernard,A., Bennett,J.L.,
            Lee,C.K., Hawrylycz,M.J., Jones,A.R., Amaral,D.G., Sestan,N.,
            Gage,F.H. and Lein,E.S.
  TITLE     Conserved molecular signatures of neurogenesis in the hippocampal
            subgranular zone of rodents and primates
  JOURNAL   Development 140 (22), 4633-4644 (2013)
   PUBMED   24154525
REFERENCE   3  (bases 1 to 5864)
  AUTHORS   Okazaki,N., F-Kikuno,R., Ohara,R., Inamoto,S., Koseki,H.,
            Hiraoka,S., Saga,Y., Seino,S., Nishimura,M., Kaisho,T., Hoshino,K.,
            Kitamura,H., Nagase,T., Ohara,O. and Koga,H.
  TITLE     Prediction of the coding sequences of mouse homologues of KIAA
            gene: IV. The complete nucleotide sequences of 500 mouse
            KIAA-homologous cDNAs identified by screening of terminal sequences
            of cDNA clones randomly sampled from size-fractionated libraries
  JOURNAL   DNA Res 11 (3), 205-218 (2004)
   PUBMED   15368895
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC166939.2, AK134614.1, AK173050.1, BB396007.2, BE853276.1 and
            AI847101.1.
            
            Transcript Variant: This variant (1) represents the longer
            transcript and encodes the longer isoform (1).
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK134614.1, SRR1660815.93988.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849375, SAMN00849380
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-723               AC166939.2         176559-177281
            724-1040            AK134614.1         1-317
            1041-1052           AK173050.1         214-225
            1053-1550           AK134614.1         330-827
            1551-1610           AK173050.1         724-783
            1611-1849           AK134614.1         888-1126
            1850-2045           AK173050.1         1023-1218
            2046-2116           AK134614.1         1323-1393
            2117-2353           AK173050.1         1290-1526
            2354-4847           AK134614.1         1631-4124
            4848-5325           BB396007.2         154-631
            5326-5362           AK134614.1         4603-4639
            5363-5585           BE853276.1         261-483             c
            5586-5864           AI847101.1         1-279               c
FEATURES             Location/Qualifiers
     source          1..5864
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="8"
                     /map="8 39.59 cM"
     gene            1..5864
                     /gene="Tbc1d9"
                     /gene_synonym="4933431N12Rik"
                     /note="TBC1 domain family, member 9"
                     /db_xref="GeneID:71310"
                     /db_xref="MGI:MGI:1918560"
     exon            1..853
                     /gene="Tbc1d9"
                     /gene_synonym="4933431N12Rik"
                     /inference="alignment:Splign:2.1.0"
     CDS             724..4518
                     /gene="Tbc1d9"
                     /gene_synonym="4933431N12Rik"
                     /note="isoform 1 is encoded by transcript variant 1"
                     /codon_start=1
                     /product="TBC1 domain family member 9 isoform 1"
                     /protein_id="NP_001104774.1"
                     /db_xref="CCDS:CCDS52607.1"
                     /db_xref="GeneID:71310"
                     /db_xref="MGI:MGI:1918560"
                     /translation="MWVNPEEVLLANALWITERANPYFILQRRKGHGGDGGGGGGLAG
                     LLVGTLDVVLDSSARVAPYRILYQTPDSLVYWTIACGGSRKEVTEHWEWLEQNLLQTL
                     SIFENENDVTTFVRGKIQGIIAEYNKINDVKEDEDTEKFKEAIVKFHRLFGMPEEEKL
                     VNYYSCSYWKGRVPRQGWMYLSINHLCFSSFLMGREAKLVIRWVDITQLEKNATLLLP
                     DMIKVSTRSSEHFFSVFLNINETFKLMEQLANIAMRQLLDNEGFEQDRSLPKLKKKSP
                     KKVSALKRDLDARAKSERYRALFRLPKDEKLDGHTDCTLWTPFNKMHILGQMFVSTNY
                     ICFTSKEENLCSLIIPLREVTIVEKADSCSVLPSPLSISTRNRMTFLFANLKDRDFLV
                     QRISDFLQQTTSRIYSDKEFSGSCNSSDDEVYSRPSSLVSSSPQRSTSSDADGERPFN
                     LNGNSVPTATQTLMTMYRRRSPEEFNPKLAKEFLKEQAWKIHFAEYGQGICMYRTEKT
                     RELVLKGIPESMRGELWLLLSGAINEKATHPGYYEGLVEKSMGKYNLATEEIERDLHR
                     SLPEHPAFQNEMGIAALRRVLTAYAFRNPNIGYCQAMNIVTSVLLLYAKEEEAFWLLV
                     ALCERMLPDYYNTRVVGALVDQGVFEELARDYVPQLYDCMQDLGVISTISLSWFLTLF
                     LSVMPFESAVVVVDCFFYEGIKVIFQLALAVLDANVDKLLNCKDDGEAMTVLGRYLDS
                     VTNKDSTLPPIPHLHSLLSDDVGPYPAVDIFRLIGTSYEKFGTIRADLIEQMRFKQRL
                     KVIQTLEDTTKRNVVRTIVTETSFTIDELEELYALFKAEHLTSCYWGGSSNALDRHDP
                     SLPYLEQYRIDFEQFKGMFVLLFPWACGTHSDVLASRLFQLLDENGDSLINFREFVSG
                     LSAACHGDLTEKLKLLYKMHVLPEPSCDQDEPDSAFEATQYFFEDITPECTHVVGLDS
                     RGKQSADDGFVTVSLKQDRGKRANSQENRNYLKLWTAENKSKSKTAKDLPKLNQGQFI
                     ELCKTMYNMFSEDPNEQELYHATAAVTSLLLEIGEVGKFFITQPAKEDAVPGPPCGQA
                     IPGMLFPKKGSSQSYVVESTEPLTASLAVDSEEHSLGGQMEDIKLEDSSPRDNGACSS
                     MLISDDDTKDDSSMSSYSVLSAGSHEEDKLHCEDIGEDTVLVRSSQGRATLPRSSSLD
                     RDWAITFEQFLASLLTEPALVRYFDKPVCMMARVTSAKNIRMMGKPLTSASDYEISAL
                     SG"
     exon            854..964
                     /gene="Tbc1d9"
                     /gene_synonym="4933431N12Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            965..1083
                     /gene="Tbc1d9"
                     /gene_synonym="4933431N12Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1084..1312
                     /gene="Tbc1d9"
                     /gene_synonym="4933431N12Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1313..1574
                     /gene="Tbc1d9"
                     /gene_synonym="4933431N12Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1575..1782
                     /gene="Tbc1d9"
                     /gene_synonym="4933431N12Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1783..1989
                     /gene="Tbc1d9"
                     /gene_synonym="4933431N12Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1990..2160
                     /gene="Tbc1d9"
                     /gene_synonym="4933431N12Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            2161..2311
                     /gene="Tbc1d9"
                     /gene_synonym="4933431N12Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            2312..2526
                     /gene="Tbc1d9"
                     /gene_synonym="4933431N12Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            2527..2644
                     /gene="Tbc1d9"
                     /gene_synonym="4933431N12Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            2645..2930
                     /gene="Tbc1d9"
                     /gene_synonym="4933431N12Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            2931..3060
                     /gene="Tbc1d9"
                     /gene_synonym="4933431N12Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            3061..3159
                     /gene="Tbc1d9"
                     /gene_synonym="4933431N12Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            3160..3228
                     /gene="Tbc1d9"
                     /gene_synonym="4933431N12Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            3229..3469
                     /gene="Tbc1d9"
                     /gene_synonym="4933431N12Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            3470..3535
                     /gene="Tbc1d9"
                     /gene_synonym="4933431N12Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            3536..3622
                     /gene="Tbc1d9"
                     /gene_synonym="4933431N12Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            3623..3697
                     /gene="Tbc1d9"
                     /gene_synonym="4933431N12Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            3698..3801
                     /gene="Tbc1d9"
                     /gene_synonym="4933431N12Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            3802..5848
                     /gene="Tbc1d9"
                     /gene_synonym="4933431N12Rik"
                     /inference="alignment:Splign:2.1.0"
     regulatory      5823..5828
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Tbc1d9"
                     /gene_synonym="4933431N12Rik"
                     /note="hexamer: AATAAA"
     polyA_site      5848
                     /gene="Tbc1d9"
                     /gene_synonym="4933431N12Rik"
                     /note="major polyA site"
ORIGIN      
        1 gcaggaaaca aaaacattac caaccattgg ctgcgtccac cttggactcc tggctctaga
       61 gccaggtctg gaacctggga acacacgttt ccggggcagg ggtggcgctg tcccgccgag
      121 cgtcagcctt gaatacacac gccacacgca ggctctggga gcggggcagc ttcctccctg
      181 ctgggatggg cgtggggccc tgcgctccgc acacagtccc taccgggctc gcgagaagcc
      241 acccgcggtc acccgggctc gcggcgactg agccgcgctg tcgtcattca ttcccagcgc
      301 cgggagcgtc cttccagctc gttgccccga cgcgcagtgt ccacgagcgg tgatctcggg
      361 ctcggcagct ggtgatcacg gcgccctggg ggctcggatt cccgcacaag ctcgcccttg
      421 aacaccgccg cgccctgaga ccgagccccg acgcttgctc gccctgcggt gggcagggcc
      481 gggctgcgag gctgtgcact tggcgagcga ggagccgtag ggaggatgct acttgctggg
      541 tcccgatccc cgtcgtcgtt cccggctgcc cgctgggtct ttgtcgcggg ccgggagccg
      601 cgggccgcag cctgctgaag gccgtcgcgg ccccgcaccc acgggcggga gggcgcgcgt
      661 gtgcccggga gagcgcgcca gtgtgcgggc ctctttgtgc gactgcccgc ggccaccagg
      721 accatgtggg tgaatccgga ggaggtactg ctggccaacg cgctgtggat caccgagaga
      781 gccaacccct acttcattct gcaacgaagg aagggccacg ggggcgacgg gggtggcggc
      841 ggcggattgg cgggcctcct tgtgggtacc ctcgatgtgg tattggactc cagtgcccga
      901 gtcgcaccgt accgaatcct ttatcaaact ccagactctc tagtctattg gaccattgcc
      961 tgtggtggct ccaggaagga ggttactgag cactgggaat ggcttgaaca gaacctactg
     1021 cagacactct ccatctttga gaatgagaat gacgtcacca catttgtaag agggaaaata
     1081 cagggcatca ttgcagaata taacaaaatc aacgatgtga aagaagatga ggatacagag
     1141 aagtttaaag aggccatcgt gaagttccac aggctgtttg ggatgcctga agaagagaaa
     1201 ctagtcaact attactcatg tagctactgg aaggggaggg tccctcggca gggctggatg
     1261 tacctaagca tcaaccacct gtgtttttct tccttcctga tggggaggga agccaagctg
     1321 gtgatccggt gggtggacat cactcagctg gagaagaacg ccacgctgct cctgccggat
     1381 atgatcaaag tgagcacaag gtccagtgag cacttcttct ccgtgttcct caacatcaat
     1441 gagacgttca agctgatgga acagcttgcc aacatagcca tgaggcagct cttggacaat
     1501 gaaggatttg aacaggaccg gtccctgcct aaactcaaga agaaatctcc caaaaaagta
     1561 tctgctctga aacgtgatct ggatgccaga gcgaagagcg agcgataccg cgcccttttc
     1621 cggctgccca aagacgaaaa gctagacggg cacactgact gcaccctctg gactccattt
     1681 aacaagatgc acattttggg tcagatgttc gtctccacta attacatctg ttttaccagc
     1741 aaggaggaaa acctctgcag cctcataatt ccactccggg aagtaaccat cgtggagaag
     1801 gccgacagct gcagtgtgct ccccagccct ctgtccatca gcaccaggaa caggatgacc
     1861 ttcctgttcg cgaacttgaa agacagagac tttctggtgc agaggatctc agatttcttg
     1921 cagcaaacga cttctaggat ctactcagac aaagagtttt caggaagctg caacagctca
     1981 gatgatgagg tgtattctcg gcccagcagc ctcgtttcct ccagtcccca gagaagcaca
     2041 agctcggatg ctgatggaga acgccccttt aacctcaatg gcaacagtgt ccctacagcc
     2101 acccagaccc tcatgaccat gtaccggcgg cgatctcctg aagaattcaa cccaaaattg
     2161 gccaaagagt ttttgaaaga acaagcctgg aagattcact ttgctgagta tgggcaggga
     2221 atctgcatgt accgcacaga gaagacccgg gagctggtgc tgaagggcat cccagagagc
     2281 atgcgcggag agctctggct gctgctttca ggggccatca atgaaaaggc cacacacccc
     2341 gggtactacg agggcctcgt ggagaagtcg atgggaaagt acaatctggc caccgaggag
     2401 attgagagag acttacaccg ctcccttcca gaacacccag ctttccagaa cgaaatgggc
     2461 atcgcggctc tgaggagagt cttaacggct tatgcttttc gcaatcccaa cataggatac
     2521 tgccaggcca tgaacattgt cacttcagtg ctactgctgt atgccaaaga ggaggaggcc
     2581 ttctggctgc ttgtggcctt gtgtgagcgc atgcttcccg actactacaa caccagagtt
     2641 gtaggtgccc tggtggacca gggagtcttc gaggagctgg ctcgagacta tgtcccgcag
     2701 ctgtacgact gcatgcagga cctgggggtg atctctacca tctccctgtc gtggttcctc
     2761 acactcttcc tcagtgtgat gccatttgag agtgcagtgg tggttgtgga ctgtttcttc
     2821 tatgaaggaa tcaaagtgat atttcagctg gctctcgctg tactggatgc caacgtggat
     2881 aaactcttga actgcaagga cgatggagag gccatgactg ttttgggaag gtacctagac
     2941 agtgtgacca acaaagacag caccctgcct cccatccccc atctccactc cctgctcagt
     3001 gacgacgtgg ggccctaccc tgccgtggac atcttcagac tcatagggac gtcttacgag
     3061 aaatttggaa ctatccgggc cgatttgatt gagcagatgc gattcaagca gaggctgaaa
     3121 gtgatccaga ccctggagga caccaccaaa cgcaatgtgg tacggaccat tgtgacggag
     3181 acgtccttca ccatcgatga gctggaagaa ctgtacgctc ttttcaaggc tgagcatctg
     3241 accagctgct actggggtgg gagcagcaat gccctggacc gacacgaccc cagcctgcct
     3301 tacctggagc agtaccgcat cgactttgag cagttcaagg gcatgttcgt gctgctcttt
     3361 ccctgggcgt gtggcacaca ctccgatgtg ctggcctccc gcctgttcca gctgttagat
     3421 gagaatggag actccttgat taacttccga gagttcgtct ctgggctgag tgctgcatgc
     3481 catggggacc tcacagagaa actcaaactc ctgtacaaga tgcacgtctt gcctgagcca
     3541 tcctgtgatc aagatgagcc tgactccgcc tttgaagcca ctcagtactt ttttgaagac
     3601 atcaccccag aatgcacaca tgttgttggc ttggacagta gaggcaagca gagtgcggac
     3661 gacggcttcg tcacagtgag cctgaagcag gacagaggga aaagggcaaa ttctcaagaa
     3721 aaccgtaatt acctaaaact ctggactgca gaaaataagt ctaagtcaaa aactgccaag
     3781 gatttgccca agctgaacca ggggcagttt attgagctct gtaagaccat gtacaacatg
     3841 ttcagtgaag accccaatga gcaggagctg taccatgcca cagctgcggt gaccagcctc
     3901 ctgctggaga tcggagaggt tggcaagttc ttcattactc agccggcaaa ggaagatgca
     3961 gttcctggac caccctgcgg ccaggccatc ccaggcatgc tcttccctaa gaaggggtcc
     4021 agccagtcct atgtggtgga gtccacagag ccactcacag ctagcctggc agtggacagt
     4081 gaggagcact ccctgggagg gcagatggag gacattaaac tggaggactc ctcacccagg
     4141 gacaacgggg cctgctcctc catgttgatc tccgatgatg acaccaagga tgacagctcc
     4201 atgtcatcct actcggtgct gagcgccggc tcccacgagg aggacaaact gcactgtgag
     4261 gacattggag aggacacagt cctggtgcgt agcagtcagg gtagagccac cctgcccagg
     4321 agcagcagcc tggaccggga ctgggccatc acctttgagc agttcctggc ctcgctcttg
     4381 acggagcccg ctctcgtgag gtactttgac aagccagtgt gcatgatggc cagggtcacc
     4441 agtgcgaaga acatccgtat gatgggcaag cccctcacct cagccagtga ctatgaaatc
     4501 tctgccctgt cgggctgatg aggggaggga agccaaggag tttttttatg ttcgtctgtg
     4561 ttgggggttg gggggaaggg ctctttcctt ttaaattaac tatttattag tacctggctt
     4621 aaaaagccta gtgttttcat aatgtaatac aatgaaaaaa tggtgagaaa tagataaccc
     4681 aaagtaaggc actaacagtc tgcctacgag gcatggctac cagaacctac tttattcatt
     4741 gatttccccc cagagaccaa actgtcagtg aaatgtgtat tataacttag ttctcttgct
     4801 gtatccatag taagaaaata tctctgttca atgctaataa agacagccgt gctctgaggt
     4861 aaaattagac ctagaaggaa aatggagact agactgtttg tagaaggaag gggcattgtg
     4921 agctggggta aaatctcgaa gtactttagt gagacttcaa aatatttttt aagatttgaa
     4981 atatatttcg taaaaatcct ctatccaaaa gtcatattct acactggccc cctcaagggg
     5041 acacatttgg gtttcaggta gttacaaaaa tataaatgaa tttgcgtgat gctagagtgg
     5101 catatttgat cagaatggac atttacaact tactctgatt atttatgtca gctgtccggg
     5161 gggtgggggt gggggggatg tgatccatct gagaacccga atgtgagtgc aaagaggtcc
     5221 caggacacag gatccagcct tttgtttcag tttttgtttt cgaaggacta gaagtcctgg
     5281 tgcctctcgt gcggggtttt tagattcttg ttactcattg aaaatacagc aaaataataa
     5341 taaaattaaa acaatgattt ttaccacttc catactttct gtagagacaa gaaattatat
     5401 catgtcgcta tagaggttac gtttgcaggg aggggattct gcaggaagac gtaactagac
     5461 gtgtaaaaca gagcctgtca ctttatttaa cagaatggaa tgttctggct cctggtgggg
     5521 tgtggccatc aaagctggca tgtctgcact ttgaatcctt atttccgttt actgctgtta
     5581 gcttttgctg gttgcagcca ctgggagacc ttccgctggg gctctcggcc acacaaccac
     5641 gttcctgttc acagtacctc tgcctgttct gaggttgctt tccaacgttc cctttgttta
     5701 ttacataccg tgtcctttct ttagctgtcc cagatgtaat tttttttaaa ttttatttgc
     5761 agaatgattt ttaaactgtc aaatgaagga gttatgaacc tcggctagga taaatgtgaa
     5821 caaataaaat acttcagata tggctcgaaa aaaaaaaaaa aaaa
//
