LOCUS       NM_001368428            1969 bp    mRNA    linear   ROD 08-JUN-2024
DEFINITION  Mus musculus TatD DNase domain containing 1 (Tatdn1), transcript
            variant 1, mRNA.
ACCESSION   NM_001368428 XM_006521365
VERSION     NM_001368428.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 1969)
  AUTHORS   Stryke,D., Kawamoto,M., Huang,C.C., Johns,S.J., King,L.A.,
            Harper,C.A., Meng,E.C., Lee,R.E., Yee,A., L'Italien,L.,
            Chuang,P.T., Young,S.G., Skarnes,W.C., Babbitt,P.C. and Ferrin,T.E.
  TITLE     BayGenomics: a resource of insertional mutations in mouse embryonic
            stem cells
  JOURNAL   Nucleic Acids Res 31 (1), 278-281 (2003)
   PUBMED   12520002
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC158777.3.
            
            On Feb 13, 2019 this sequence version replaced XM_006521365.3.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR7345562.3792911.1, BC061187.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN01164138, SAMN01164143
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-60                AC158777.3         114522-114581
            61-126              AC158777.3         119511-119576
            127-176             AC158777.3         121775-121824
            177-240             AC158777.3         124292-124355
            241-384             AC158777.3         126843-126986
            385-427             AC158777.3         127078-127120
            428-513             AC158777.3         131898-131983
            514-554             AC158777.3         132068-132108
            555-631             AC158777.3         138611-138687
            632-702             AC158777.3         142449-142519
            703-829             AC158777.3         143400-143526
            830-1969            AC158777.3         147190-148329
FEATURES             Location/Qualifiers
     source          1..1969
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="15"
                     /map="15 25.09 cM"
     gene            1..1969
                     /gene="Tatdn1"
                     /gene_synonym="2310079P03Rik; CDA11"
                     /note="TatD DNase domain containing 1"
                     /db_xref="GeneID:69694"
                     /db_xref="MGI:MGI:1916944"
     exon            1..60
                     /gene="Tatdn1"
                     /gene_synonym="2310079P03Rik; CDA11"
                     /inference="alignment:Splign:2.1.0"
     CDS             39..926
                     /gene="Tatdn1"
                     /gene_synonym="2310079P03Rik; CDA11"
                     /note="isoform 1 is encoded by transcript variant 1;
                     putative deoxyribonuclease TATDN1"
                     /codon_start=1
                     /product="deoxyribonuclease TATDN1 isoform 1"
                     /protein_id="NP_001355357.1"
                     /db_xref="CCDS:CCDS88768.1"
                     /db_xref="GeneID:69694"
                     /db_xref="MGI:MGI:1916944"
                     /translation="MSLFKFVDIGINLTDPMFRGIYRGVQKHQDDLQDVIERAIQIGV
                     KKFMITGGSLQDSKDALQLAQTNDMFFSTVGCHPTRCDEFEKGSPDQYLAGLLSLAEN
                     NKGKVVAIGECGLDFDRLQFCPKDTQLKYFEKQFELSEQTQLPMFLHCRNSHTEFLDI
                     MRRNRDRYVGGVVHSFDGTKEAAAALVDLGLYIGFNGCSLKTEANLEVLKSIPSEKLM
                     IETDAPWCGVKSTHAGSKYINTSFPTKKKWENGHCLKDRNEPCHIIQILEIMSAVREE
                     DPLELANTLYNNTIKVFFS"
     exon            61..126
                     /gene="Tatdn1"
                     /gene_synonym="2310079P03Rik; CDA11"
                     /inference="alignment:Splign:2.1.0"
     exon            127..176
                     /gene="Tatdn1"
                     /gene_synonym="2310079P03Rik; CDA11"
                     /inference="alignment:Splign:2.1.0"
     exon            177..240
                     /gene="Tatdn1"
                     /gene_synonym="2310079P03Rik; CDA11"
                     /inference="alignment:Splign:2.1.0"
     exon            241..384
                     /gene="Tatdn1"
                     /gene_synonym="2310079P03Rik; CDA11"
                     /inference="alignment:Splign:2.1.0"
     exon            385..427
                     /gene="Tatdn1"
                     /gene_synonym="2310079P03Rik; CDA11"
                     /inference="alignment:Splign:2.1.0"
     exon            428..513
                     /gene="Tatdn1"
                     /gene_synonym="2310079P03Rik; CDA11"
                     /inference="alignment:Splign:2.1.0"
     exon            514..554
                     /gene="Tatdn1"
                     /gene_synonym="2310079P03Rik; CDA11"
                     /inference="alignment:Splign:2.1.0"
     exon            555..631
                     /gene="Tatdn1"
                     /gene_synonym="2310079P03Rik; CDA11"
                     /inference="alignment:Splign:2.1.0"
     exon            632..702
                     /gene="Tatdn1"
                     /gene_synonym="2310079P03Rik; CDA11"
                     /inference="alignment:Splign:2.1.0"
     exon            703..829
                     /gene="Tatdn1"
                     /gene_synonym="2310079P03Rik; CDA11"
                     /inference="alignment:Splign:2.1.0"
     exon            830..1969
                     /gene="Tatdn1"
                     /gene_synonym="2310079P03Rik; CDA11"
                     /inference="alignment:Splign:2.1.0"
     regulatory      906..911
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Tatdn1"
                     /gene_synonym="2310079P03Rik; CDA11"
                     /note="hexamer: ATTAAA"
     polyA_site      926
                     /gene="Tatdn1"
                     /gene_synonym="2310079P03Rik; CDA11"
                     /note="major polyA site"
ORIGIN      
        1 acttccgctt ttccctggga ggagcctgcc gcgccgtcat gagtctcttc aagttcgtgg
       61 atattggcat caacctgaca gatcctatgt tcagaggaat ttataggggg gtgcagaagc
      121 atcaagatga cttacaagat gtaatagaga gagctatcca gattggtgtt aaaaagttta
      181 tgatcacagg tggaagtctc caagacagta aagatgcact gcagttggca caaacaaatg
      241 acatgttttt cagtacagtg gggtgtcacc ccacgagatg tgatgagttt gagaagggta
      301 gccctgatca gtacttagca ggattgctga gccttgctga gaacaacaaa ggaaaagttg
      361 ttgcaatagg agaatgtgga cttgattttg accgacttca gttttgtccc aaagatactc
      421 aactcaaata ttttgaaaaa caatttgaac tgtcagaaca aacacaatta ccaatgtttc
      481 ttcattgtcg caattcacat actgagtttt tagatattat gagaagaaat agagaccggt
      541 atgtgggtgg agtggtccat tcgtttgatg gcacgaagga agcagcagct gctttggttg
      601 acttgggcct ttatatagga tttaatggtt gctctctgaa aactgaagct aacttggaag
      661 ttctgaagtc aatacctagt gaaaaactaa tgattgagac agatgcacct tggtgtggag
      721 ttaaaagtac acatgctgga tcaaaataca taaacacttc atttcctacc aaaaagaaat
      781 gggaaaacgg gcactgctta aaagatagaa acgagccctg ccacatcatt caaatattgg
      841 agataatgtc agcagtcaga gaagaagacc cactggaatt ggccaacacg ctctataaca
      901 acaccattaa agtgtttttt tcctgatttg tgtttccttt ttatgatgtg gaatttcatt
      961 gtaaaactgt gaactttatt gaggaatttt ttccagtagc actgtacatt acacctcgaa
     1021 gagtcaggtc agcactgttt aggctgcttt agttaacaat gtccaccttt ttattgtgta
     1081 atctcatcag aagtctgaaa ggacagtttt atgctctcac tgcaaacaca gtgatgcttc
     1141 tactaagact tagacagcac atcctggatt atatcaaagt ttagttgata acaagcctat
     1201 ttctcaattc tgtccctgtt ttttgacttt tgaacctagc tctaagctgc agctcaggtt
     1261 tcaagttttt tagttgcttc tagcaggtta tcttgcctta gttttagaag acattttata
     1321 gcctttctac tcaagattat ttttcttctc gtctcttata ctaaagttcc tttattctgc
     1381 attttcattt tcccactcat tttaaggaaa agctagagtc cagcattaga tatattccaa
     1441 tttcatggag gaatctttgg cacaattgac gcaccatatg atcattatct ctattaagaa
     1501 gctatttgtt caaattttgt cataaaaacg tgaaaacttt tattctatgt acaataatgt
     1561 acacaaattt aaacaggtca ccaaagagac cagaagtaat taaagaggta tatttacagt
     1621 agcacatcac agtaaacgga aagcattcac agtttcaaca tccatactgt ttttgtgctt
     1681 ggttacacac tgacgtgaag catattactc cattttggat gaactgaatt ttaaacaaat
     1741 acctcaatga ttagtaaatg ctactttaat cagtgtcatc attaaattct gcggctgctg
     1801 ctgctgcgcc tgtgtgctga atccccccgt ttctttctct ttgagcatca tcatcacagt
     1861 ctgtactgtc atcctcgttc agttctcggt cagatccagc agcatcctct cttaaagcct
     1921 cctctgggtt tggattttca ttgggtgcaa taaatccgtt gttgttaga
//
