LOCUS       NM_001159907            5060 bp    mRNA    linear   ROD 30-APR-2024
DEFINITION  Mus musculus TAR RNA binding protein 1 (Tarbp1), mRNA.
ACCESSION   NM_001159907
VERSION     NM_001159907.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 5060)
  AUTHORS   Adams,D.J., Barlas,B., McIntyre,R.E., Salguero,I., van der
            Weyden,L., Barros,A., Vicente,J.R., Karimpour,N., Haider,A.,
            Ranzani,M., Turner,G., Thompson,N.A., Harle,V., Olvera-Leon,R.,
            Robles-Espinoza,C.D., Speak,A.O., Geisler,N., Weninger,W.J.,
            Geyer,S.H., Hewinson,J., Karp,N.A., Fu,B., Yang,F., Kozik,Z.,
            Choudhary,J., Yu,L., van Ruiten,M.S., Rowland,B.D., Lelliott,C.J.,
            Del Castillo Velasco-Herrera,M., Verstraten,R., Bruckner,L.,
            Henssen,A.G., Rooimans,M.A., de Lange,J., Mohun,T.J., Arends,M.J.,
            Kentistou,K.A., Coelho,P.A., Zhao,Y., Zecchini,H., Perry,J.R.B.,
            Jackson,S.P. and Balmus,G.
  CONSRTM   Sanger Mouse Genetics Project
  TITLE     Genetic determinants of micronucleus formation in vivo
  JOURNAL   Nature 627 (8002), 130-136 (2024)
   PUBMED   38355793
REFERENCE   2  (bases 1 to 5060)
  AUTHORS   Wang,Y.M., Zheng,Y.F., Yang,S.Y., Yang,Z.M., Zhang,L.N., He,Y.Q.,
            Gong,X.H., Liu,D., Finnell,R.H., Qiu,Z.L., Du,Y.S. and Wang,H.Y.
  TITLE     MicroRNA-197 controls ADAM10 expression to mediate MeCP2's role in
            the differentiation of neuronal progenitors
  JOURNAL   Cell Death Differ 26 (10), 1863-1879 (2019)
   PUBMED   30560934
REFERENCE   3  (bases 1 to 5060)
  AUTHORS   Koscielny,G., Yaikhom,G., Iyer,V., Meehan,T.F., Morgan,H.,
            Atienza-Herrero,J., Blake,A., Chen,C.K., Easty,R., Di Fenza,A.,
            Fiegel,T., Grifiths,M., Horne,A., Karp,N.A., Kurbatova,N.,
            Mason,J.C., Matthews,P., Oakley,D.J., Qazi,A., Regnart,J.,
            Retha,A., Santos,L.A., Sneddon,D.J., Warren,J., Westerberg,H.,
            Wilson,R.J., Melvin,D.G., Smedley,D., Brown,S.D., Flicek,P.,
            Skarnes,W.C., Mallon,A.M. and Parkinson,H.
  TITLE     The International Mouse Phenotyping Consortium Web Portal, a
            unified point of access for knockout mice and related phenotyping
            data
  JOURNAL   Nucleic Acids Res 42 (Database issue), D802-D809 (2014)
   PUBMED   24194600
REFERENCE   4  (bases 1 to 5060)
  AUTHORS   Daniels,S.M., Melendez-Pena,C.E., Scarborough,R.J., Daher,A.,
            Christensen,H.S., El Far,M., Purcell,D.F., Laine,S. and Gatignol,A.
  TITLE     Characterization of the TRBP domain required for dicer interaction
            and function in RNA interference
  JOURNAL   BMC Mol Biol 10, 38 (2009)
   PUBMED   19422693
  REMARK    GeneRIF: Binding of Dicer to TRBPs is critical for RNAi function.
            Publication Status: Online-Only
REFERENCE   5  (bases 1 to 5060)
  AUTHORS   Stryke,D., Kawamoto,M., Huang,C.C., Johns,S.J., King,L.A.,
            Harper,C.A., Meng,E.C., Lee,R.E., Yee,A., L'Italien,L.,
            Chuang,P.T., Young,S.G., Skarnes,W.C., Babbitt,P.C. and Ferrin,T.E.
  TITLE     BayGenomics: a resource of insertional mutations in mouse embryonic
            stem cells
  JOURNAL   Nucleic Acids Res 31 (1), 278-281 (2003)
   PUBMED   12520002
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC151908.8.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR10223970.10896.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMN00849374,
                                           SAMN00849375 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-811               AC151908.8         2828-3638
            812-909             AC151908.8         6494-6591
            910-979             AC151908.8         7805-7874
            980-1128            AC151908.8         10711-10859
            1129-1181           AC151908.8         14658-14710
            1182-1279           AC151908.8         16458-16555
            1280-1415           AC151908.8         18721-18856
            1416-1512           AC151908.8         20133-20229
            1513-1602           AC151908.8         21327-21416
            1603-1738           AC151908.8         21689-21824
            1739-1835           AC151908.8         23998-24094
            1836-2008           AC151908.8         24931-25103
            2009-2106           AC151908.8         25563-25660
            2107-2268           AC151908.8         27068-27229
            2269-2483           AC151908.8         29466-29680
            2484-2745           AC151908.8         30311-30572
            2746-2934           AC151908.8         30665-30853
            2935-3125           AC151908.8         33568-33758
            3126-3197           AC151908.8         33892-33963
            3198-3318           AC151908.8         37019-37139
            3319-3429           AC151908.8         38980-39090
            3430-3579           AC151908.8         41041-41190
            3580-3666           AC151908.8         43009-43095
            3667-3863           AC151908.8         43849-44045
            3864-3945           AC151908.8         46990-47071
            3946-4117           AC151908.8         48841-49012
            4118-4309           AC151908.8         49627-49818
            4310-4434           AC151908.8         49951-50075
            4435-4571           AC151908.8         50334-50470
            4572-5060           AC151908.8         50753-51241
FEATURES             Location/Qualifiers
     source          1..5060
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="8"
                     /map="8 74.1 cM"
     gene            1..5060
                     /gene="Tarbp1"
                     /gene_synonym="Gm17296; Gm179"
                     /note="TAR RNA binding protein 1"
                     /db_xref="GeneID:212728"
                     /db_xref="MGI:MGI:4936930"
     exon            1..811
                     /gene="Tarbp1"
                     /gene_synonym="Gm17296; Gm179"
                     /inference="alignment:Splign:2.1.0"
     exon            812..909
                     /gene="Tarbp1"
                     /gene_synonym="Gm17296; Gm179"
                     /inference="alignment:Splign:2.1.0"
     exon            910..979
                     /gene="Tarbp1"
                     /gene_synonym="Gm17296; Gm179"
                     /inference="alignment:Splign:2.1.0"
     exon            980..1128
                     /gene="Tarbp1"
                     /gene_synonym="Gm17296; Gm179"
                     /inference="alignment:Splign:2.1.0"
     exon            1129..1181
                     /gene="Tarbp1"
                     /gene_synonym="Gm17296; Gm179"
                     /inference="alignment:Splign:2.1.0"
     exon            1182..1279
                     /gene="Tarbp1"
                     /gene_synonym="Gm17296; Gm179"
                     /inference="alignment:Splign:2.1.0"
     exon            1280..1415
                     /gene="Tarbp1"
                     /gene_synonym="Gm17296; Gm179"
                     /inference="alignment:Splign:2.1.0"
     exon            1416..1512
                     /gene="Tarbp1"
                     /gene_synonym="Gm17296; Gm179"
                     /inference="alignment:Splign:2.1.0"
     exon            1513..1602
                     /gene="Tarbp1"
                     /gene_synonym="Gm17296; Gm179"
                     /inference="alignment:Splign:2.1.0"
     exon            1603..1738
                     /gene="Tarbp1"
                     /gene_synonym="Gm17296; Gm179"
                     /inference="alignment:Splign:2.1.0"
     exon            1739..1835
                     /gene="Tarbp1"
                     /gene_synonym="Gm17296; Gm179"
                     /inference="alignment:Splign:2.1.0"
     exon            1836..2008
                     /gene="Tarbp1"
                     /gene_synonym="Gm17296; Gm179"
                     /inference="alignment:Splign:2.1.0"
     exon            2009..2106
                     /gene="Tarbp1"
                     /gene_synonym="Gm17296; Gm179"
                     /inference="alignment:Splign:2.1.0"
     exon            2107..2268
                     /gene="Tarbp1"
                     /gene_synonym="Gm17296; Gm179"
                     /inference="alignment:Splign:2.1.0"
     exon            2269..2483
                     /gene="Tarbp1"
                     /gene_synonym="Gm17296; Gm179"
                     /inference="alignment:Splign:2.1.0"
     exon            2484..2745
                     /gene="Tarbp1"
                     /gene_synonym="Gm17296; Gm179"
                     /inference="alignment:Splign:2.1.0"
     exon            2746..2934
                     /gene="Tarbp1"
                     /gene_synonym="Gm17296; Gm179"
                     /inference="alignment:Splign:2.1.0"
     exon            2935..3125
                     /gene="Tarbp1"
                     /gene_synonym="Gm17296; Gm179"
                     /inference="alignment:Splign:2.1.0"
     exon            3126..3197
                     /gene="Tarbp1"
                     /gene_synonym="Gm17296; Gm179"
                     /inference="alignment:Splign:2.1.0"
     exon            3198..3318
                     /gene="Tarbp1"
                     /gene_synonym="Gm17296; Gm179"
                     /inference="alignment:Splign:2.1.0"
     exon            3319..3429
                     /gene="Tarbp1"
                     /gene_synonym="Gm17296; Gm179"
                     /inference="alignment:Splign:2.1.0"
     exon            3430..3579
                     /gene="Tarbp1"
                     /gene_synonym="Gm17296; Gm179"
                     /inference="alignment:Splign:2.1.0"
     exon            3580..3666
                     /gene="Tarbp1"
                     /gene_synonym="Gm17296; Gm179"
                     /inference="alignment:Splign:2.1.0"
     exon            3667..3863
                     /gene="Tarbp1"
                     /gene_synonym="Gm17296; Gm179"
                     /inference="alignment:Splign:2.1.0"
     exon            3864..3945
                     /gene="Tarbp1"
                     /gene_synonym="Gm17296; Gm179"
                     /inference="alignment:Splign:2.1.0"
     exon            3946..4117
                     /gene="Tarbp1"
                     /gene_synonym="Gm17296; Gm179"
                     /inference="alignment:Splign:2.1.0"
     exon            4118..4309
                     /gene="Tarbp1"
                     /gene_synonym="Gm17296; Gm179"
                     /inference="alignment:Splign:2.1.0"
     exon            4310..4434
                     /gene="Tarbp1"
                     /gene_synonym="Gm17296; Gm179"
                     /inference="alignment:Splign:2.1.0"
     exon            4435..4571
                     /gene="Tarbp1"
                     /gene_synonym="Gm17296; Gm179"
                     /inference="alignment:Splign:2.1.0"
     exon            4572..5060
                     /gene="Tarbp1"
                     /gene_synonym="Gm17296; Gm179"
                     /inference="alignment:Splign:2.1.0"
     regulatory      4894..4899
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Tarbp1"
                     /gene_synonym="Gm17296; Gm179"
                     /note="hexamer: ATTATA"
     polyA_site      4899
                     /gene="Tarbp1"
                     /gene_synonym="Gm17296; Gm179"
                     /note="major polyA site"
     polyA_site      4922
                     /gene="Tarbp1"
                     /gene_synonym="Gm17296; Gm179"
ORIGIN      
        1 atggagcggg tgttggcgga cgcgcttcta acgcagagtc gggagcccgg cgagttgctg
       61 ggcgcgctgt gcggcgggga ggcgagtgcg gagcgggcgg agaccctgcg cctggtgctg
      121 cagcggctgg aggagcgcgg cgcgggcgcc ggcgcgctgg ccaaggcggc acacgaggtg
      181 gccagggacc acctggtgcc cttactgcac gcgtcccagg gcggagggcc tgcgaggccc
      241 cgcgtgctcc gagcggcgag tgcggcgctg cgctcgtgcg cgcgcctggc aggaccggag
      301 ctggcagtca ctctggccga agaagcgctg cgcgagctgc cgagcgcgcc agccgtggag
      361 ctgctggccg ccgtggcgcc gtgtttacgc gcgccggagg atgccccgct gctgcgtcgc
      421 ctggggcgcg cgtctgtgga gctggcgctg gccggggacg cgccgccggc cgtgggagcg
      481 cgcctgctgc ccgcgctggc acagagcgca gaaccggctc tgcgtgcggc gtgggacgcg
      541 ctgagctccg cgggaccggg agctgagggc agcactgggc cagaactgct ggtgctgagc
      601 gcactggccg agaagctgct gaccaaccat gagcgccacg gggatctcga cgcccgtctc
      661 tgcggccgct tctggagaac cgtccaggcg gggctgggcc gcgcgcagga cgggctcacg
      721 cgaaagcgcg cgcgctacct gctgcagagg gctgtacagg tgtctgcaga gctggcggtg
      781 gactgctcct gcagccccca ggacacaaaa ggtccgagcc tattctggtg gtctgagaag
      841 agaaaagatg agctcctaaa gttttgggaa aactatatct tgatcatgga aattttggaa
      901 ggaaaccaga tacatgtcat aaagccagcc ttaccaaagc taaacaggct gtttgaatgc
      961 gcagtgtcag aggagaatgg ctgctggctc ttccatccct cctggcacac gtgcatctac
     1021 aaaagaatgt ttgaaagcga gaataaaatt ctggccaaag aaggcgtgat ccacttcttg
     1081 gagctgtatg acgtgaaatc gcttccttat tccccggaac tctcagagtt tattactggc
     1141 ccgctgatgg atgccctctc agagagctgt ctgtacagca ggtccccagg gcagccgttg
     1201 ggaagtgact ctcccctggg attaaagctg cagaagtttc tagtcactta tacttccctt
     1261 cttccagaag aaacaaagag ttgtttcctg ttaaagctca ttcagagaat ggcggacaga
     1321 cactggtgtg cagtgccggt tttgttcctg tccagggctt tggcaagcat acccagctgt
     1381 aaggccctgg gtggagaagg tcttcttgcc ctcagggatg ttctccagcg caccatgatc
     1441 acacaccagg tcctcctgag aggagcagct cagtgctacc ttcttcagac agccatgcgt
     1501 ctggtggacg tggagaaagt atctctttct gacatctcag cttttctctt gtctctgaga
     1561 caagaggagt ccctcggacg tgggacggtg ctgtggacag agctctgtga ctggctacgt
     1621 gtcaatgaaa gatactttaa gcaatcctca cttggtggct ctgatggaca ggaggcgtca
     1681 ttaaatgctt acgtgaagaa cctagttcag gagttcgtga agtctcctgg ttgggaaaaa
     1741 gaaagcagct tcatgccaga ctggctggac gccaggctga cagcgctgat ggtcctgctg
     1801 gctgtggacg tggaaggact gaagaccaag ttcagggaaa agcagaggac tcagaacgtg
     1861 ttgaggatct tcctagaccc cttgctggat gccctaggga agctcggcac caatgcctac
     1921 atgcccttgc tgaggactga ccggtgcctc cagctgctgg tgaggttgct gcattcttgt
     1981 gtgccaagac gtcccggtgc ccaggatgat gaggtatcca ctgccctcca gggctccatc
     2041 atgtctgctt cagagagcgt gtctcagttt gtgctcagga gactcaccat gaacgagctg
     2101 caggatgtgg cggatctgga ccgatgtcag ctctacctga cggtgttgtc tgagctcatg
     2161 agtctccagg ttaagctggg ctggaaagca ggcaacccca tcagccgggt cctttctcct
     2221 ttgaaaaacg catgtgttcg ccatctgcag gaggctgagg acagacagga gccgaccttg
     2281 agtcatcagg tacagagagt ggtcagcatg gccgccctgg cagctctgtg tgaggctgtg
     2341 gaccagtacc cagtgctgca gcctgactcc cccaatgctg agcctgtgga caggttcctg
     2401 tcagctcttc cactcaatca cgtgctgcag aagccccgat cagaggagca gagcatcggt
     2461 gtgtgtcccc tggagaatgg cagtgtcttt gaagaatcat tgtcttccaa aggatggggg
     2521 aaagtagttg cacagtatct acatgatcag tgggtctgcc tctccttcct gctgagaaag
     2581 caccaccacc tcattccaag cacggaaagt gacgtgctgg agggctttct ccctactgct
     2641 gagacacctg tgcaggccct gcaggcagcg ctggacgtcc tcaccgtcct ccctgctggc
     2701 cgcatcttgc ctgtgttccg ctgcatggag gtgctagttc ccaagctcct gacctccgag
     2761 gagaccctct gcatagagtc ctttgacgtg gcttggaaaa ttatatcttc cttgagcaac
     2821 acacagctga cgttctggcc taatttaaag gcttttgttc actttgtttt cgaccatgag
     2881 attcttacca ttgctgcaaa actcaagggc caggtgtact tcaaaataaa agagattatg
     2941 tgcaagatga ttgaaatgtc ctccataaaa tcaggtgtct tcaatattct gatacgtcac
     3001 tgctgccagt catggctagt ggctgcttcc ggcgtgtccc aggggtcatt ctccagtgct
     3061 aaggattaca gtgaacttgt cctggaggct tgcgtgtttg gaacagtgtt taggcgcgat
     3121 cagagactta ttcaggatgt ccaaaccttc atagaaaacc ttggacaagg ctgtgcagca
     3181 aacgtcatca ttgagaatgc taagagagaa gattattacg tgagaatctg tgccatcaaa
     3241 ttcttgtgtc tgctagatgg ctccgatgtg tcccacaagt tgttcttaga agctcttgcc
     3301 atcaagctct tggataagga tgagtcagca tccaggtcca gaactcgata ccatgagaac
     3361 tccctccagc accgggtgaa gaaccgtgtg tggcagactc tgcttgtcct cttccctgca
     3421 tttgatcaga acttcttaca tggaattatt gataaggtct ttcacgctgg cttcaccaac
     3481 aatcaagcgt ccataaaata ttttattgag tggcttatta tattgattct tcataaattc
     3541 cctgagtttc ttccaaagtt ctgggcgtgt ttttcttacg gtgaagaaaa aattaaggca
     3601 agcatttgta catttttatc tgttttatca catttggaca tcattgttca gaatattcca
     3661 gaaaagaagc tggttctgaa gcaagctctc accgttgccc tccagtggtg tctgagtcac
     3721 aatttcagtg ttcggctcta tgctctggta gccctcaaga aggcctggca tctgtgtaaa
     3781 acactgcagt ttgaggagtg tggcgcctgg accgcagtca tcgagtgcag cctcagccaa
     3841 gcagaaagca tgcacggagc agggaatgcc aggaagaact ggcagcgcat ccaggaccat
     3901 ttcttcttct ccaccttcca cccccttaag gactactgtc tggagaccat attttacacg
     3961 ctcccacggc tctcgggtgt cactggagag gagtggatcg ccttggataa atttgccaac
     4021 ttcacagaca tcccttccaa tgcagggtcc cagtggtacc tgtctgggac tgcactcggt
     4081 gagctgagtc caggagactg gtcccagcag gaccaaggtt ctactttggg tgaagcagac
     4141 agccagtcag aatgggctga tgtccagaaa aaaatcatcc catggggaca aagcgctctg
     4201 gaatcagacc tggagctcga gtttcaggat cgggctgcca agctcggaaa gtccattagc
     4261 agactgatcg ttgtggcctc actcatcgac aagccgacca acctgggagg gctgtgcagg
     4321 acctgtgagg tgttcggggc tgcagtactt gttgtcggca gccttcagtg tgtcagcgat
     4381 agacagttcc agcacctcag tgtgtctgca gagcagtggc ttcctctggt ggaggtgaga
     4441 ccatcccagc tgatgaatta tctgcagcag aaaaaggcag aaggctacac tgtcattggc
     4501 gtggagcaga cagcgcaaag ctcagatctg gcccagtacc gcttccctga gaagtcgctg
     4561 ctgctgttgg gaaacgagcg ggaaggaatc ccagccaacc tgatccagca gctggatgtg
     4621 tgtgtggaga ttcctcagca gggcatcatc cgctcactaa atgtgcatgt gagcggggct
     4681 ctgctgattt gggagtacac cagacagcag ctgctcgggt gtgcggagcc accatcctga
     4741 aggctgggcc tcacctgcga tctctcatgg tgctatggtg acttataacc ttctggacta
     4801 acgaaatatt ctgagatgtc ctgggatttt cttcgtgtct ctaaccttgc acctcaatgc
     4861 caaaaccttt tcatgtgcct taaagtatat atcattatat atattgtccc ctttttagct
     4921 aaccttttta aatattttaa gcatttatgg gatttttaaa aaggaatttt taagttatgg
     4981 tcttcctaga aaccggtatt gtcagactgg cagaactaaa gttgttattt atgggcacct
     5041 gtgcccttct gttttgagag
//
