LOCUS       NM_145391               2080 bp    mRNA    linear   ROD 02-MAY-2024
DEFINITION  Mus musculus TAP binding protein-like (Tapbpl), mRNA.
ACCESSION   NM_145391
VERSION     NM_145391.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 2080)
  AUTHORS   Adams,D.J., Barlas,B., McIntyre,R.E., Salguero,I., van der
            Weyden,L., Barros,A., Vicente,J.R., Karimpour,N., Haider,A.,
            Ranzani,M., Turner,G., Thompson,N.A., Harle,V., Olvera-Leon,R.,
            Robles-Espinoza,C.D., Speak,A.O., Geisler,N., Weninger,W.J.,
            Geyer,S.H., Hewinson,J., Karp,N.A., Fu,B., Yang,F., Kozik,Z.,
            Choudhary,J., Yu,L., van Ruiten,M.S., Rowland,B.D., Lelliott,C.J.,
            Del Castillo Velasco-Herrera,M., Verstraten,R., Bruckner,L.,
            Henssen,A.G., Rooimans,M.A., de Lange,J., Mohun,T.J., Arends,M.J.,
            Kentistou,K.A., Coelho,P.A., Zhao,Y., Zecchini,H., Perry,J.R.B.,
            Jackson,S.P. and Balmus,G.
  CONSRTM   Sanger Mouse Genetics Project
  TITLE     Genetic determinants of micronucleus formation in vivo
  JOURNAL   Nature 627 (8002), 130-136 (2024)
   PUBMED   38355793
REFERENCE   2  (bases 1 to 2080)
  AUTHORS   Teng,M.S., Stephens,R., Du Pasquier,L., Freeman,T., Lindquist,J.A.
            and Trowsdale,J.
  TITLE     A human TAPBP (TAPASIN)-related gene, TAPBP-R
  JOURNAL   Eur J Immunol 32 (4), 1059-1068 (2002)
   PUBMED   11920573
  REMARK    GeneRIF: Focuses on cloning and characterization of human TAPBP-R
            but also identifies the mouse ortholog Tapbpl.
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AA762569.1, BC094656.1, BX517366.1 and AC140324.3.
            
            On Aug 4, 2009 this sequence version replaced NM_145391.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC017613.1, SRR17253011.9498314.1
                                           [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMN00849374,
                                           SAMN00849375 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-29                AA762569.1         68-96
            30-473              BC094656.1         1-444
            474-474             BX517366.1         327-327
            475-2070            BC094656.1         445-2040
            2071-2080           AC140324.3         158951-158960
FEATURES             Location/Qualifiers
     source          1..2080
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="6"
                     /map="6 59.32 cM"
     gene            1..2080
                     /gene="Tapbpl"
                     /gene_synonym="TAPBPL-R; Tapbplr"
                     /note="TAP binding protein-like"
                     /db_xref="GeneID:213233"
                     /db_xref="MGI:MGI:2384853"
     exon            1..327
                     /gene="Tapbpl"
                     /gene_synonym="TAPBPL-R; Tapbplr"
                     /inference="alignment:Splign:2.1.0"
     CDS             264..1619
                     /gene="Tapbpl"
                     /gene_synonym="TAPBPL-R; Tapbplr"
                     /note="tapasin-related protein; TAPBP-R; TAPASIN-R;
                     tapasin-like; TAP-binding protein-related protein"
                     /codon_start=1
                     /product="tapasin-related protein precursor"
                     /protein_id="NP_663366.2"
                     /db_xref="CCDS:CCDS20547.1"
                     /db_xref="GeneID:213233"
                     /db_xref="MGI:MGI:2384853"
                     /translation="MGLEPSWYLLLCLAVSGAAGTDPPTAPTTAERQRQPTDIILDCF
                     LVTEDRHRGAFASSGDRERALLVLKQVPVLDDGSLEGITDFQGSTETKQDSPVIFEAS
                     VDLVQIPQAEALLHADCSGKAVTCEISKYFLQARQEATFEKAHWFISNMQVSRGGPSV
                     SMVMKTLRDAEVGAVRHPTLNLPLSAQGTVKTQVEFQVTSETQTLNHLLGSSVSLHCS
                     FSMAPGLDLTGVEWRLQHKGSGQLVYSWKTGQGQAKRKGATLEPEELLRAGNASLTLP
                     NLTLKDEGNYICQISTSLYQAQQIMPLNILAPPKIQLHLANKDPLPSLVCSIAGYYPL
                     DVGVTWIREELGGIPAQVSGASFSSLRQSTMGTYSISSTVMADPGPTGATYTCQVAHV
                     SLEEPLTTSMRVLPNPEQRGTLGVIFASIIFLSALLLFLGLHRQQASSSRSTRPMRHS
                     G"
     exon            328..570
                     /gene="Tapbpl"
                     /gene_synonym="TAPBPL-R; Tapbplr"
                     /inference="alignment:Splign:2.1.0"
     exon            571..843
                     /gene="Tapbpl"
                     /gene_synonym="TAPBPL-R; Tapbplr"
                     /inference="alignment:Splign:2.1.0"
     exon            844..1182
                     /gene="Tapbpl"
                     /gene_synonym="TAPBPL-R; Tapbplr"
                     /inference="alignment:Splign:2.1.0"
     exon            1183..1488
                     /gene="Tapbpl"
                     /gene_synonym="TAPBPL-R; Tapbplr"
                     /inference="alignment:Splign:2.1.0"
     exon            1489..1575
                     /gene="Tapbpl"
                     /gene_synonym="TAPBPL-R; Tapbplr"
                     /inference="alignment:Splign:2.1.0"
     exon            1576..2080
                     /gene="Tapbpl"
                     /gene_synonym="TAPBPL-R; Tapbplr"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 caggttttga aatcacctgg ggatttcttg ggtgcggggt ggaccttagg gagaacagaa
       61 agcagagctg gctgcagcca ttactggcct cgggcgggcg gccacagagg cagttgaagt
      121 gaaagtgaaa gagaaacgat aagagaacgg agaccacagg tgctaagtga gggtgctcac
      181 agaaccccct cttcagccag agatcactag caggggaact gtggagaagg cagccagcaa
      241 ggaagagcct gagagtagcc tccatgggct tggagcccag ctggtatctg ctgctctgtt
      301 tggctgtctc tggggcagca gggactgacc ctcccacagc gcccaccaca gcagaaagac
      361 agcggcagcc cacggacatc atcttagact gcttcttggt gacagaagac aggcaccgcg
      421 gggcttttgc cagcagtggg gacagggaga gggccttgct tgtgctgaag caggtaccag
      481 tgctggatga tggctccctg gaaggcatca cagatttcca ggggagcact gagaccaaac
      541 aggattcacc tgttatcttt gaggcctcag tggacttggt acagattccc caggcagagg
      601 cgttgctcca tgctgactgc agcgggaagg cagtgacctg cgagatctcc aagtatttcc
      661 tccaggccag acaagaggcc acttttgaga aagcacattg gttcatcagc aacatgcagg
      721 tttctagagg tggccccagt gtctccatgg tgatgaagac tctaagagat gctgaagttg
      781 gagctgtccg gcaccctaca ctgaacctac ctctgagtgc ccagggcaca gtgaagactc
      841 aagtggagtt ccaggtgaca tcagagaccc aaaccctgaa ccacctgctg gggtcctctg
      901 tctccctgca ctgcagtttc tccatggcac caggcctgga cctcactggc gtggagtggc
      961 ggctgcagca taaaggcagc ggccagctgg tgtacagctg gaagacaggg caggggcagg
     1021 ccaagcgcaa gggcgctaca ctggagcctg aggagctact cagggctgga aacgcctctc
     1081 tcaccttacc caacctcact ctaaaggatg aggggaacta catctgccag atctccacct
     1141 ctctgtatca agctcaacag atcatgccac ttaacatcct ggctcccccc aaaatacaac
     1201 tgcacttggc aaacaaggat cctctgcctt ccctcgtctg cagcattgcc ggctactatc
     1261 ctctggatgt gggagtgacg tggattcgag aggagctggg tggaattcca gcccaagtct
     1321 ctggtgcctc cttctccagc ctcaggcaga gcacgatggg aacctacagc atttcttcca
     1381 cggtgatggc tgacccaggc cccacaggtg ccacttacac ctgccaagtc gcccacgtct
     1441 ccctggagga gccccttaca accagcatga gggttttgcc aaatccagag cagagaggaa
     1501 ccttgggagt catctttgcc agcatcatct tcctttctgc gctgttgttg tttctgggac
     1561 ttcacagaca gcaagcttct tcatcaaggt ccaccaggcc tatgaggcat tctgggtagc
     1621 cgcctgcctg cctccgaata caaagtaaag tactccacat cctggctact taaaggaccc
     1681 cgtgtgaggt gtggggctga gctgggcctg aaggtgccag cacattggga gtgcagtact
     1741 ggccctggac tgtacaagtc tctgctttct gtgctattga gaagagagcc ctgggctgat
     1801 gaaaagggac aggacaagag gatggcagaa ttatcaaagt ggaagctaac accatctatg
     1861 tgaggtatta agaaatcggg ggtgggggct ggtgagatgg ctcagtgggt aagagcaccc
     1921 gactgctctt ccgaagatct ggagttcaaa tcccagcaac cacatggtgg ctcacaacca
     1981 tctgtaacga gatctgactc cctcttctgg agtgtctgaa gacagctaca gtgtacttac
     2041 atataataaa taaataaatc taataaaaaa gaaaaaaaaa
//
