LOCUS       NM_027139               1240 bp    mRNA    linear   ROD 03-APR-2024
DEFINITION  Mus musculus TATA-box binding protein associated factor 9 (Taf9),
            transcript variant 1, mRNA.
ACCESSION   NM_027139
VERSION     NM_027139.5
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 1240)
  AUTHORS   Bardot,P., Vincent,S.D., Fournier,M., Hubaud,A., Joint,M., Tora,L.
            and Pourquie,O.
  TITLE     The TAF10-containing TFIID and SAGA transcriptional complexes are
            dispensable for early somitogenesis in the mouse embryo
  JOURNAL   Development 144 (20), 3808-3818 (2017)
   PUBMED   28893950
REFERENCE   2  (bases 1 to 1240)
  AUTHORS   Langer,D., Martianov,I., Alpern,D., Rhinn,M., Keime,C., Dolle,P.,
            Mengus,G. and Davidson,I.
  TITLE     Essential role of the TFIID subunit TAF4 in murine embryogenesis
            and embryonic stem cell differentiation
  JOURNAL   Nat Commun 7, 11063 (2016)
   PUBMED   27026076
  REMARK    Publication Status: Online-Only
REFERENCE   3  (bases 1 to 1240)
  AUTHORS   Thompson,C.L., Ng,L., Menon,V., Martinez,S., Lee,C.K.,
            Glattfelder,K., Sunkin,S.M., Henry,A., Lau,C., Dang,C.,
            Garcia-Lopez,R., Martinez-Ferre,A., Pombero,A., Rubenstein,J.L.R.,
            Wakeman,W.B., Hohmann,J., Dee,N., Sodt,A.J., Young,R., Smith,K.,
            Nguyen,T.N., Kidney,J., Kuan,L., Jeromin,A., Kaykas,A., Miller,J.,
            Page,D., Orta,G., Bernard,A., Riley,Z., Smith,S., Wohnoutka,P.,
            Hawrylycz,M.J., Puelles,L. and Jones,A.R.
  TITLE     A high-resolution spatiotemporal atlas of gene expression of the
            developing mouse brain
  JOURNAL   Neuron 83 (2), 309-323 (2014)
   PUBMED   24952961
REFERENCE   4  (bases 1 to 1240)
  AUTHORS   Kamileri,I., Karakasilioti,I., Sideri,A., Kosteas,T., Tatarakis,A.,
            Talianidis,I. and Garinis,G.A.
  TITLE     Defective transcription initiation causes postnatal growth failure
            in a mouse model of nucleotide excision repair (NER) progeria
  JOURNAL   Proc Natl Acad Sci U S A 109 (8), 2995-3000 (2012)
   PUBMED   22323595
REFERENCE   5  (bases 1 to 1240)
  AUTHORS   Campbell,G.R., Baudhuin,A., Vranizan,K. and Ngai,J.
  TITLE     Transcription factors expressed in olfactory bulb local progenitor
            cells revealed by genome-wide transcriptome profiling
  JOURNAL   Mol Cell Neurosci 46 (2), 548-561 (2011)
   PUBMED   21194568
REFERENCE   6  (bases 1 to 1240)
  AUTHORS   Brand,M., Moggs,J.G., Oulad-Abdelghani,M., Lejeune,F.,
            Dilworth,F.J., Stevenin,J., Almouzni,G. and Tora,L.
  TITLE     UV-damaged DNA-binding protein in the TFTC complex links DNA damage
            recognition to nucleosome acetylation
  JOURNAL   EMBO J 20 (12), 3187-3196 (2001)
   PUBMED   11406595
REFERENCE   7  (bases 1 to 1240)
  AUTHORS   Araki,K., Imaizumi,T., Sekimoto,T., Yoshinobu,K., Yoshimuta,J.,
            Akizuki,M., Miura,K., Araki,M. and Yamamura,K.
  TITLE     Exchangeable gene trap using the Cre/mutated lox system
  JOURNAL   Cell Mol Biol (Noisy-le-grand) 45 (5), 737-750 (1999)
   PUBMED   10512203
REFERENCE   8  (bases 1 to 1240)
  AUTHORS   Brand,M., Yamamoto,K., Staub,A. and Tora,L.
  TITLE     Identification of TATA-binding protein-free TAFII-containing
            complex subunits suggests a role in nucleosome acetylation and
            signal transduction
  JOURNAL   J Biol Chem 274 (26), 18285-18289 (1999)
   PUBMED   10373431
REFERENCE   9  (bases 1 to 1240)
  AUTHORS   Schiltz,R.L., Mizzen,C.A., Vassilev,A., Cook,R.G., Allis,C.D. and
            Nakatani,Y.
  TITLE     Overlapping but distinct patterns of histone acetylation by the
            human coactivators p300 and PCAF within nucleosomal substrates
  JOURNAL   J Biol Chem 274 (3), 1189-1192 (1999)
   PUBMED   9880483
REFERENCE   10 (bases 1 to 1240)
  AUTHORS   Ogryzko,V.V., Kotani,T., Zhang,X., Schiltz,R.L., Howard,T.,
            Yang,X.J., Howard,B.H., Qin,J. and Nakatani,Y.
  TITLE     Histone-like TAFs within the PCAF histone acetylase complex
  JOURNAL   Cell 94 (1), 35-44 (1998)
   PUBMED   9674425
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            BY108476.1 and BC096683.1.
            
            On Apr 4, 2008 this sequence version replaced NM_027139.4.
            
            Transcript Variant: This variant (1) differs in the 5' UTR compared
            to variant 3. Variants 1 and 3 encode the same protein.
            
            Publication Note:  This RefSeq record includes a subset of the
            publications that are available for this gene. Please see the Gene
            record to access additional publications.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC108348.1, BC042723.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374, SAMN00849375
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-334               BY108476.1         1-334
            335-1240            BC096683.1         1083-1988
FEATURES             Location/Qualifiers
     source          1..1240
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="13"
                     /map="13 53.23 cM"
     gene            1..1240
                     /gene="Taf9"
                     /gene_synonym="2310012M09Rik; Taf2g; TAFII31; TAFII32"
                     /note="TATA-box binding protein associated factor 9"
                     /db_xref="GeneID:108143"
                     /db_xref="MGI:MGI:1888697"
     exon            1..103
                     /gene="Taf9"
                     /gene_synonym="2310012M09Rik; Taf2g; TAFII31; TAFII32"
                     /inference="alignment:Splign:2.1.0"
     exon            104..196
                     /gene="Taf9"
                     /gene_synonym="2310012M09Rik; Taf2g; TAFII31; TAFII32"
                     /inference="alignment:Splign:2.1.0"
     exon            197..1223
                     /gene="Taf9"
                     /gene_synonym="2310012M09Rik; Taf2g; TAFII31; TAFII32"
                     /inference="alignment:Splign:2.1.0"
     CDS             214..1008
                     /gene="Taf9"
                     /gene_synonym="2310012M09Rik; Taf2g; TAFII31; TAFII32"
                     /EC_number="2.7.4.3"
                     /note="TAF9 RNA polymerase II, TATA box binding protein
                     (TBP)-associated factor, 32 kDa; RNA polymerase II
                     TBP-associated factor subunit G; transcription initiation
                     factor TFIID 31 kDa subunit; transcription initiation
                     factor TFIID 32 kDa subunit"
                     /codon_start=1
                     /product="transcription initiation factor TFIID subunit 9"
                     /protein_id="NP_081415.1"
                     /db_xref="CCDS:CCDS26735.1"
                     /db_xref="GeneID:108143"
                     /db_xref="MGI:MGI:1888697"
                     /translation="MESGKMASPKSMPKDAQMMAQILKDMGITEYEPRVINQMLEFAF
                     RYVTTILDDAKIYSSHAKKATVDADDVRLAIQCRADQSFTSPPPRDFLLDIARQRNQT
                     PLPLIKPYSGPRLPPDRYCLTAPNYRLKSLQKKAPAPAGRITVPRLSVGSVSSRPSTP
                     TLGTPTPQTMSVSTKVGTPMSLTGQRFTVQMPASQSPAVKASIPATSTVQNVLINPSL
                     IGSKNILITTNMVSQNTAESANALKRKREDDDDDDDDDDDDDYDNM"
ORIGIN      
        1 tttccggttc ctccctggca agcgcgtcgg ggcgggcgcg tgagcggagg ctttggctgc
       61 aggggaagga ggactatgaa gcttccgaat atcctgctca ccggtacacc aggggttgga
      121 aaaaccacac taggcaaaga acttgcatca agatcaggcc tgaagtacgt taacgtggga
      181 gatctagctc gagaagtctg atcagcggat atcatggagt ctggcaagat ggcgtctccc
      241 aagagcatgc cgaaagatgc acagatgatg gcacaaatcc tgaaggatat ggggattaca
      301 gaatatgagc caagagttat aaatcagatg ctggagtttg ccttccgata tgtgacaaca
      361 attctagatg atgctaaaat ttattccagc catgctaaga aagctactgt tgatgcagat
      421 gacgtacgac tggcaatcca gtgccgtgct gaccagtctt tcacttctcc acccccgaga
      481 gatttcttat tagatattgc acgacaaaga aatcaaaccc ctttgccact gatcaagcca
      541 tattcaggtc ctagattgcc acctgatagg tattgcttaa ctgccccaaa ctataggctt
      601 aagtctttac agaaaaaggc acctgctcct gcaggaagaa taacagttcc aaggttaagt
      661 gttggttcag tttctagtag accaagtact cccaccctag gtacaccgac tccacaaacc
      721 atgtctgttt caactaaagt aggcacccca atgtccctca caggacagag gtttacagta
      781 cagatgcctg cttctcagtc ccctgctgta aaagcttcta tacctgcaac atcaacagtt
      841 cagaatgttc ttattaatcc atcgttaatt gggtccaaaa acattcttat tactactaat
      901 atggtatcac agaatacagc cgagtcagca aatgcactga aacggaaacg tgaagacgat
      961 gatgatgacg atgatgacga tgatgatgat gactatgata atatgtagtc tagccacgat
     1021 gcatgtaacc tgtgttcttg gacttggatc cattgtacta caagttaaaa agcatgttag
     1081 atgttttaaa gctgtacttt agaaagtggt gtttcatacg tatgctttgc tttttgatta
     1141 aaatgttcag ttttactaga actagtgatg gtttttcatc aacctttatg cacaaaaaat
     1201 aaaattgtca tttatcagtt tgaaaaaaaa aaaaaaaaaa
//
