LOCUS       NM_175770               3302 bp    mRNA    linear   ROD 03-JUN-2024
DEFINITION  Mus musculus TATA-box binding protein associated factor 7 (Taf7),
            mRNA.
ACCESSION   NM_175770 NM_011901
VERSION     NM_175770.4
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 3302)
  AUTHORS   El-Saafin,F., Bergamasco,M.I., Chen,Y., May,R.E., Esakky,P.,
            Hediyeh-Zadeh,S., Dixon,M., Wilcox,S., Davis,M.J., Strasser,A.,
            Smyth,G.K., Thomas,T. and Voss,A.K.
  TITLE     Loss of TAF8 causes TFIID dysfunction and p53-mediated apoptotic
            neuronal cell death
  JOURNAL   Cell Death Differ 29 (5), 1013-1027 (2022)
   PUBMED   35361962
REFERENCE   2  (bases 1 to 3302)
  AUTHORS   Cheng,D., Semmens,K., McManus,E., Chen,Q., Meerzaman,D., Wang,X.,
            Hafner,M., Lewis,B.A., Takahashi,H., Devaiah,B.N., Gegonne,A. and
            Singer,D.S.
  TITLE     The nuclear transcription factor, TAF7, is a cytoplasmic regulator
            of protein synthesis
  JOURNAL   Sci Adv 7 (50), eabi5751 (2021)
   PUBMED   34890234
REFERENCE   3  (bases 1 to 3302)
  AUTHORS   Yu,C., Cvetesic,N., Hisler,V., Gupta,K., Ye,T., Gazdag,E.,
            Negroni,L., Hajkova,P., Berger,I., Lenhard,B., Muller,F.,
            Vincent,S.D. and Tora,L.
  TITLE     TBPL2/TFIIA complex establishes the maternal transcriptome through
            oocyte-specific promoter usage
  JOURNAL   Nat Commun 11 (1), 6439 (2020)
   PUBMED   33353944
  REMARK    Publication Status: Online-Only
REFERENCE   4  (bases 1 to 3302)
  AUTHORS   Gustafson,E.A., Seymour,K.A., Sigrist,K., Rooij,D.G.D.E. and
            Freiman,R.N.
  TITLE     ZFP628 Is a TAF4b-Interacting Transcription Factor Required for
            Mouse Spermiogenesis
  JOURNAL   Mol Cell Biol 40 (7), e00228-19 (2020)
   PUBMED   31932482
  REMARK    Publication Status: Online-Only
REFERENCE   5  (bases 1 to 3302)
  AUTHORS   Elbert,A., Vogt,D., Watson,A., Levy,M., Jiang,Y., Brule,E.,
            Rowland,M.E., Rubenstein,J. and Berube,N.G.
  TITLE     CTCF Governs the Identity and Migration of MGE-Derived Cortical
            Interneurons
  JOURNAL   J Neurosci 39 (1), 177-192 (2019)
   PUBMED   30377227
REFERENCE   6  (bases 1 to 3302)
  AUTHORS   Gegonne,A., Weissman,J.D. and Singer,D.S.
  TITLE     TAFII55 binding to TAFII250 inhibits its acetyltransferase activity
  JOURNAL   Proc Natl Acad Sci U S A 98 (22), 12432-12437 (2001)
   PUBMED   11592977
REFERENCE   7  (bases 1 to 3302)
  AUTHORS   Brand,M., Moggs,J.G., Oulad-Abdelghani,M., Lejeune,F.,
            Dilworth,F.J., Stevenin,J., Almouzni,G. and Tora,L.
  TITLE     UV-damaged DNA-binding protein in the TFTC complex links DNA damage
            recognition to nucleosome acetylation
  JOURNAL   EMBO J 20 (12), 3187-3196 (2001)
   PUBMED   11406595
REFERENCE   8  (bases 1 to 3302)
  AUTHORS   Wu,Q., Zhang,T., Cheng,J.F., Kim,Y., Grimwood,J., Schmutz,J.,
            Dickson,M., Noonan,J.P., Zhang,M.Q., Myers,R.M. and Maniatis,T.
  TITLE     Comparative DNA sequence analysis of mouse and human protocadherin
            gene clusters
  JOURNAL   Genome Res 11 (3), 389-404 (2001)
   PUBMED   11230163
REFERENCE   9  (bases 1 to 3302)
  AUTHORS   Wu,S.Y., Thomas,M.C., Hou,S.Y., Likhite,V. and Chiang,C.M.
  TITLE     Isolation of mouse TFIID and functional characterization of TBP and
            TFIID in mediating estrogen receptor and chromatin transcription
  JOURNAL   J Biol Chem 274 (33), 23480-23490 (1999)
   PUBMED   10438527
REFERENCE   10 (bases 1 to 3302)
  AUTHORS   Brand,M., Yamamoto,K., Staub,A. and Tora,L.
  TITLE     Identification of TATA-binding protein-free TAFII-containing
            complex subunits suggests a role in nucleosome acetylation and
            signal transduction
  JOURNAL   J Biol Chem 274 (26), 18285-18289 (1999)
   PUBMED   10373431
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            DV656353.1, AK076362.1 and AC020971.3.
            
            On Aug 14, 2009 this sequence version replaced NM_175770.3.
            
            Sequence Note: This RefSeq record was created from transcript and
            genomic sequence data to make the sequence consistent with the
            reference genome assembly. The genomic coordinates used for the
            transcript record were based on transcript alignments.
            
            Publication Note:  This RefSeq record includes a subset of the
            publications that are available for this gene. Please see the Gene
            record to access additional publications.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK076362.1, BC029673.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374, SAMN00849375
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-38                DV656353.1         1-38
            39-1375             AK076362.1         2-1338
            1376-3302           AC020971.3         71017-72943         c
FEATURES             Location/Qualifiers
     source          1..3302
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="18"
                     /map="18 19.54 cM"
     gene            1..3302
                     /gene="Taf7"
                     /gene_synonym="55kDa; Taf2f; TAFII55"
                     /note="TATA-box binding protein associated factor 7"
                     /db_xref="GeneID:24074"
                     /db_xref="MGI:MGI:1346348"
     exon            1..260
                     /gene="Taf7"
                     /gene_synonym="55kDa; Taf2f; TAFII55"
                     /inference="alignment:Splign:2.1.0"
     exon            261..3302
                     /gene="Taf7"
                     /gene_synonym="55kDa; Taf2f; TAFII55"
                     /inference="alignment:Splign:2.1.0"
     CDS             281..1306
                     /gene="Taf7"
                     /gene_synonym="55kDa; Taf2f; TAFII55"
                     /note="TATA box binding protein (TBP) associated factor,
                     RNA polymerase II, F, 55 kDa; TAF7 RNA polymerase II, TATA
                     box binding protein (TBP)-associated factor, 55 kDa;
                     TAFII-55; TAF(II)55; RNA polymerase II TBP-associated
                     factor subunit F; transcription initiation factor TFIID 55
                     kDa subunit"
                     /codon_start=1
                     /product="transcription initiation factor TFIID subunit 7"
                     /protein_id="NP_786964.1"
                     /db_xref="CCDS:CCDS29189.1"
                     /db_xref="GeneID:24074"
                     /db_xref="MGI:MGI:1346348"
                     /translation="MSKNKDDAPHELESQFILRLPPEYAATVRRAVQSGHVNLKDKLS
                     IELHPDGRHGIVRVDRVPLAAKLVDLPCVTESLKTIDKKTFYKTADISQMLVATVDGD
                     LYPPVEEAAATADPKANKKKDKDKEKKFVWNHGITLPLKNVRKRRFRKTAKKKYIESP
                     DVEKEVKRLLSTDAEAVSTRWEIIAEDETKETENQGLDISSPGMSGHRQGHDSLEHDE
                     LREIFNDLSSSSEDEEDVNILDTEEDLERQLQDKLNESDEQHQENEGTNQLVMGIQKQ
                     IDNMKGKLQETQDRAKRQEDLIMKVENLALKNRFQAVLDELKQKEDREKEQLSSLQEE
                     LESLLEK"
     regulatory      1746..1751
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Taf7"
                     /gene_synonym="55kDa; Taf2f; TAFII55"
                     /note="hexamer: AATAAA"
     polyA_site      1771
                     /gene="Taf7"
                     /gene_synonym="55kDa; Taf2f; TAFII55"
                     /note="major polyA site"
     regulatory      2969..2974
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Taf7"
                     /gene_synonym="55kDa; Taf2f; TAFII55"
                     /note="hexamer: AATAAA"
     polyA_site      3002
                     /gene="Taf7"
                     /gene_synonym="55kDa; Taf2f; TAFII55"
     regulatory      3015..3020
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Taf7"
                     /gene_synonym="55kDa; Taf2f; TAFII55"
                     /note="hexamer: ATTAAA"
     polyA_site      3039
                     /gene="Taf7"
                     /gene_synonym="55kDa; Taf2f; TAFII55"
     regulatory      3245..3250
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Taf7"
                     /gene_synonym="55kDa; Taf2f; TAFII55"
                     /note="hexamer: ATTATA"
     polyA_site      3272
                     /gene="Taf7"
                     /gene_synonym="55kDa; Taf2f; TAFII55"
ORIGIN      
        1 gtgacgtagc gccgcgtctg cttccgctct gacggagcac tttcgttttc ttcagtgaga
       61 ggagacgtgg gaaagttgtc tccggtgttc ggttctctga gagggagctt tcgcgccgcg
      121 ggtccttagc cgtctcattg ttagcgcata ggtcgccctg ccgggcggcc gagaacgcca
      181 agaaaccgga aggcggacgc accgctccct gctgctttgc tcaagccgcg aaaagctaag
      241 ttcacagtcg ctggtgaact gagctcacaa ggaattaaag atgagtaaga acaaagacga
      301 tgcgcctcat gagctagaga gccagtttat cttacgactg cccccagaat atgccgctac
      361 ggtgaggagg gcagtgcagt ctgggcatgt caacctgaaa gacaaactga gcattgagtt
      421 acaccctgat gggcgtcacg gcattgtcag agtggatcga gtgcccttgg ctgcaaaatt
      481 ggtcgatttg ccttgtgtta cggaaagctt gaaaaccatc gataagaaaa ccttttacaa
      541 gacagctgat atctctcaga tgcttgtagc cacagtagat ggtgacctat accctcctgt
      601 ggaggaggca gctgccactg ctgatcccaa agcaaacaag aaaaaagata aggacaaaga
      661 gaaaaagttt gtttggaacc atggaattac tctacctcta aaaaatgtca gaaagagacg
      721 gttccggaag acagcaaaga agaagtacat tgaatctccg gatgtggaaa aagaagtcaa
      781 gcgtctgctg agtacagatg cagaagctgt cagtactcgt tgggagataa ttgctgaaga
      841 tgaaacaaag gagacagaaa atcaaggcct ggacatctct tctccaggaa tgtctggcca
      901 caggcaaggc catgactcac tagagcatga tgagcttcga gagatattca atgacctcag
      961 cagcagcagt gaagatgaag aagacgtaaa catccttgac actgaggaag atctggagag
     1021 acagctacaa gacaagctaa atgaatccga cgagcaacac caagaaaatg aaggaaccaa
     1081 tcagttggtt atgggaattc agaagcagat agataacatg aaaggcaagc tccaagaaac
     1141 ccaagacagg gcaaagcgcc aggaagatct cattatgaag gtagaaaacc tggctctcaa
     1201 gaacaggttt caggcagttc tggatgagct caaacaaaaa gaagaccgcg aaaaggagca
     1261 gcttagctct ttgcaggaag agctggaatc acttctggag aagtgagctt gttgacttta
     1321 gtccttagac tagtcagctc aagaaaaaat tattttcaga gtaaggtctt gaaatacttt
     1381 ttttttcttt gaaatgttct tattccctga gttttgttga aaattttttg attgtttttc
     1441 agaactatgg tggtgggttt tcattcttaa gaaaatagga ttacatagac aggtttgttg
     1501 tagggaagat ataagaaaga tgagtgaaat gaaaacactt gaacttttaa tcacaggact
     1561 ttattacaat ttgtttccta aaagtttcta gtcctttttt tttttttttt tggtgctaag
     1621 atcagtaata agctagccta caggcagtga agttaatttc ttttaaaaga aatatatttt
     1681 tttttacctc agcaagtttc catgttacag aaatgcaagt ttttcataaa ggttgtttct
     1741 tatacaataa aagctactaa ttttcactgt ttatgatgtt gttctatgaa tactgaaagt
     1801 tgaggtggtt catggagttt aatgactgaa tggtgtagat caagataaat cctgttcttt
     1861 tgtttttagg aaaaggaaag caccaggtaa ggaaatggag aaattcattg ttgcattata
     1921 tattaaggtt caggtccacc cacttcatct ggaggtttat gaacactggg tctagagcct
     1981 tcttaaacta tcctagtttt tatggatgga tatctgtatc tttttcttaa gcactaaggt
     2041 tatctgtaaa atattggaag cagttatcag ataaactatt ccacatgctt agattaagat
     2101 tatattttaa ctattgccaa tttaactgct acaattattt aatagactga tgtttattca
     2161 tattgtttca ttagtatttc ccagtatgaa aacctgtgtc ctggtctggg attttaaaat
     2221 ttcatataca gagaaaaatt ctgtgtgttt ttttaaatac taaaaagctg cccctaggca
     2281 aactaagtat gaattcagaa tggaagtcat ctggcccctt tcattgagaa cttgccttct
     2341 gtattgctgt tgacggctgc cagagcctct gaagccctaa ctagtctgaa cagcttgagg
     2401 tcaaggcata ccagtacata tcagtgactt gattgtatga tttttgggcc gtgtaatttg
     2461 tagcttaatc cgtttgcttc tattttcttc tctctgaaat ggaggtgata gtattaccag
     2521 ccgcacaggg ctattggact gacttaaatc ataaggcagg cttacttaga acagtacctg
     2581 gaatatggtg agtgaagagt taacaaagaa acgttaccat ttactaaact ggatcataaa
     2641 aggcattaaa gagtgataga gaatagtaag gtgtttacaa agaaattttt tatttttgac
     2701 tcactctgta tctcaggatg gccttgaact cagttctctc aatcaagtgc tgggactgta
     2761 ggtgtgcatg ggcaggcctg gcttaggcaa cagctgtttt aattaggttt tgtttcaaat
     2821 tcaacaaagg ctcaaaccgt ctattttgga aaaggtttag aatatctaca gcataaaaat
     2881 tgactcaact tattcctgta gttttcttgt ttgtttctgg atatttttat aataatacta
     2941 aaaatggcat aaggagtaat tatctgttaa taaaatttaa aagatgaaga ttgagatcta
     3001 aatcctacat tctcattaaa gattcacttt tctcatgcag ctcttagcta aggagtatgc
     3061 tataaagaca gtgtctatgg gttcaagggc agattatgct tgtgtatgtg tgtgtgttgg
     3121 gggtgctggg ccttgggaac actaggcaat tgctctgtca ctgattagta cattttaaga
     3181 ggtatcatct catgccttta tttgtataca aaacattaca tttatgtagt tttctaatgc
     3241 aaaaattata attttgttat atagaccctc tagagacttg tctaaaaata tgaatgttta
     3301 tc
//
