LOCUS       XM_011240939            2430 bp    mRNA    linear   ROD 07-FEB-2024
DEFINITION  PREDICTED: Mus musculus TATA-box binding protein associated factor
            6 (Taf6), transcript variant X5, mRNA.
ACCESSION   XM_011240939
VERSION     XM_011240939.3
DBLINK      BioProject: PRJNA169
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000071.7) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Sep 21, 2020 this sequence version replaced XM_011240939.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001635.27-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/01/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2430
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6J"
                     /db_xref="taxon:10090"
                     /chromosome="5"
     gene            1..2430
                     /gene="Taf6"
                     /gene_synonym="80kDa; p80; TAF(II)80; Taf2e; TAFII70"
                     /note="TATA-box binding protein associated factor 6;
                     Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 8 mRNAs, 75 ESTs, 395 long SRA reads, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 25 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:21343"
                     /db_xref="MGI:MGI:109129"
     CDS             211..2280
                     /gene="Taf6"
                     /gene_synonym="80kDa; p80; TAF(II)80; Taf2e; TAFII70"
                     /codon_start=1
                     /product="transcription initiation factor TFIID subunit 6
                     isoform X1"
                     /protein_id="XP_011239241.1"
                     /db_xref="GeneID:21343"
                     /db_xref="MGI:MGI:109129"
                     /translation="MAEEKKLKLSNTVLPSESMKVVAESMGIAQIQEETCQLLTDEVS
                     YRIKEIAQDALKFMHMGKRQKLTTSDIDYALKLKNVEPLYGFHAQEFIPFRFASGGGR
                     ELYFYEEKEVDLSDIINTPLPRVPLDVCLKAHWLSIEGCQPAIPENPPPAPKEQQKAE
                     ATEPLKSAKPGQEEDGPLKGKGQGAAAADGKGKEKKAPPLLEGAPFRLKPRSIHELSV
                     EQQLYYKEITEACVGSCEAKRAEALQSIATDPGLYQMLPRFSTFISEGVRELGKDRPM
                     MRLQGRGMTRVRGPSGNLTTGGLVSDSLTGPGLSQVHELIPAVMTCIVSRQLCLRPDV
                     DNHWALRDFAARLVAQICKHFSTTTNNIQSRITKTFTKSWVDEKTPWTTRYGSIAGLA
                     ELGHDVIKTLILPRLQQEGERIRSVLDGPVLSNIDRIGADHVQSLLLKHCAPVLAKLR
                     PPPDNQDAYRGEFGSLGPLLCSHVVKARAQAALQAQQVNRTTLTITQPRPTLTLSQAP
                     QPGPRTPGLLKVPGSIALPVQTLVSARAAAPPQPSPPPTKFIVMSSSSSASSTQQVLS
                     LSTSAPGSGSTTTSPVTTTVPSVQPIVKLVSTATTAPPSTAPAGSGSVQKYIVVSLPP
                     TGEGKGGPPSHPSPVPPSSSSPSPLGGSTLCGGKQEAGDSPPPAPGTPKANGSQPTGP
                     GSPQPAL"
ORIGIN      
        1 tactcctgtc agggggcggg gccaagatgg cgccgagcgc cgggtgagcg gcgctttggc
       61 agcggtgaga ggcttttact gctcccggtg cttggctggc gggggaaagt ctgaggtgta
      121 tccgtgagga gaccctttga aagggcccat gatctccatc tttccatcct ggggaggcat
      181 ccttccaggg acaggagctg gaattccagc atggccgagg agaagaaact gaaactcagc
      241 aatactgtgt tgccctctga gtccatgaag gtggtggcag aatctatggg cattgctcag
      301 attcaggagg agacttgcca gctactgaca gatgaggtca gctaccgcat caaggagatt
      361 gcccaggatg ccctgaagtt catgcacatg gggaaacgac agaagctcac taccagtgac
      421 attgactatg cattgaagtt aaagaatgtg gagccactgt atggcttcca tgctcaggag
      481 ttcatccctt tccggtttgc ctctggcggg ggccgggagc tgtacttcta tgaagagaag
      541 gaagtggacc tgagtgacat catcaacacc cctctgcctc gggtgcctct ggatgtctgc
      601 ctcaaagctc attggctaag catcgaaggc tgccagccag ctataccaga gaatccaccc
      661 ccagctccca aagagcagca gaaggctgag gccacagaac ccctgaaatc agcaaagcca
      721 ggccaagaag aagatggacc cctgaaaggc aaaggtcaag gggcagctgc agctgatggc
      781 aaaggaaaag agaagaaggc acctcccttg ctggaggggg cccctttccg cctgaagccc
      841 cgcagcatcc atgagctgtc tgtggagcag cagctgtatt acaaggagat cacggaagcc
      901 tgtgtgggat cctgtgaggc caagagagcg gaagctctgc agagcattgc cacggaccca
      961 gggctctatc agatgctacc acggttcagt accttcatct cagagggggt gagagaactg
     1021 ggaaaggaca gacccatgat gaggctccaa gggaggggga tgacaagggt caggggccct
     1081 tctggcaacc tcaccacagg aggtctggta tcagactcac tgacagggcc tggtctctct
     1141 caggtgcatg agctcattcc agcagtaatg acctgcattg tgagtagaca gctgtgcttg
     1201 cggccagatg tggacaatca ctgggcactc cgggattttg ctgcccgtct agtggcccaa
     1261 atctgtaagc atttcagcac aaccaccaac aacatccaat cccgaatcac taagaccttt
     1321 accaagagct gggtcgacga gaagactcca tggacaactc gatatggctc cattgcaggc
     1381 ctagcagagc tgggacatga tgtgattaag acgctaattc tgccaaggct gcagcaggaa
     1441 ggggaacgga tccgcagtgt cttggatggg cctgtgctga gcaacatcga ccgtattgga
     1501 gcagaccatg tgcagagcct tctcctgaaa cactgtgccc cagtactggc caagctgcgc
     1561 cctccacctg acaatcagga tgcctaccgg ggagaatttg ggtcccttgg gccccttctc
     1621 tgttcccatg tggtgaaggc cagggcccag gctgctctac aagctcagca ggtcaacagg
     1681 accacactca ccatcacaca gcctcggccc acactgaccc tttcacaggc ccctcagcca
     1741 ggccctcgca cgcctggctt attgaaggtc cctggctcca ttgccttgcc tgttcagaca
     1801 ctggtgtctg cgagagctgc tgctcctcct cagccttctc ctcctccaac caagtttatt
     1861 gtaatgtcct catcttccag tgcctcatca acccagcagg ttctgtccct cagcacctca
     1921 gctcctggct caggctctac tactacctct cctgtcacca ccacggttcc cagcgtgcag
     1981 cccatcgtca agctggtctc cactgctacc actgcacccc caagcacagc ccctgctggt
     2041 tctggcagtg ttcagaaata cattgtggtc tctcttcccc caacagggga aggcaaagga
     2101 ggccctcctt ctcatccttc tccagtcccc ccttcatctt cttcaccatc cccacttggg
     2161 ggaagtaccc tctgtggggg gaagcaggaa gctggggaca gcccccctcc agctccaggg
     2221 actccaaagg ctaatggctc gcagcctact ggacctggct ctccccagcc tgctctgtga
     2281 tgtgtcacat gtgctgacct cctctcttgt gcagattcct acacactcaa acaacctgtg
     2341 agggaggaag gaggaaaggt tttccccagt gactttcttt ttagatattg tacagtaagt
     2401 tcctcagaat aaaagttgga tttgtaagtt
//
