LOCUS       NM_001081288            5033 bp    mRNA    linear   ROD 30-APR-2024
DEFINITION  Mus musculus TATA-box binding protein associated factor 2 (Taf2),
            mRNA.
ACCESSION   NM_001081288 XM_885934
VERSION     NM_001081288.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 5033)
  AUTHORS   Adams,D.J., Barlas,B., McIntyre,R.E., Salguero,I., van der
            Weyden,L., Barros,A., Vicente,J.R., Karimpour,N., Haider,A.,
            Ranzani,M., Turner,G., Thompson,N.A., Harle,V., Olvera-Leon,R.,
            Robles-Espinoza,C.D., Speak,A.O., Geisler,N., Weninger,W.J.,
            Geyer,S.H., Hewinson,J., Karp,N.A., Fu,B., Yang,F., Kozik,Z.,
            Choudhary,J., Yu,L., van Ruiten,M.S., Rowland,B.D., Lelliott,C.J.,
            Del Castillo Velasco-Herrera,M., Verstraten,R., Bruckner,L.,
            Henssen,A.G., Rooimans,M.A., de Lange,J., Mohun,T.J., Arends,M.J.,
            Kentistou,K.A., Coelho,P.A., Zhao,Y., Zecchini,H., Perry,J.R.B.,
            Jackson,S.P. and Balmus,G.
  CONSRTM   Sanger Mouse Genetics Project
  TITLE     Genetic determinants of micronucleus formation in vivo
  JOURNAL   Nature 627 (8002), 130-136 (2024)
   PUBMED   38355793
REFERENCE   2  (bases 1 to 5033)
  AUTHORS   Scheer,E., Luo,J., Bernardini,A., Ruffenach,F., Garnier,J.M.,
            Kolb-Cheynel,I., Gupta,K., Berger,I., Ranish,J. and Tora,L.
  TITLE     TAF8 regions important for TFIID lobe B assembly or for TAF2
            interactions are required for embryonic stem cell survival
  JOURNAL   J Biol Chem 297 (5), 101288 (2021)
   PUBMED   34634302
  REMARK    GeneRIF: TAF8 regions important for TFIID lobe B assembly or for
            TAF2 interactions are required for embryonic stem cell survival.
REFERENCE   3  (bases 1 to 5033)
  AUTHORS   Bardot,P., Vincent,S.D., Fournier,M., Hubaud,A., Joint,M., Tora,L.
            and Pourquie,O.
  TITLE     The TAF10-containing TFIID and SAGA transcriptional complexes are
            dispensable for early somitogenesis in the mouse embryo
  JOURNAL   Development 144 (20), 3808-3818 (2017)
   PUBMED   28893950
REFERENCE   4  (bases 1 to 5033)
  AUTHORS   Langer,D., Martianov,I., Alpern,D., Rhinn,M., Keime,C., Dolle,P.,
            Mengus,G. and Davidson,I.
  TITLE     Essential role of the TFIID subunit TAF4 in murine embryogenesis
            and embryonic stem cell differentiation
  JOURNAL   Nat Commun 7, 11063 (2016)
   PUBMED   27026076
  REMARK    Publication Status: Online-Only
REFERENCE   5  (bases 1 to 5033)
  AUTHORS   Zhao,Y., Lang,G., Ito,S., Bonnet,J., Metzger,E., Sawatsubashi,S.,
            Suzuki,E., Le Guezennec,X., Stunnenberg,H.G., Krasnov,A.,
            Georgieva,S.G., Schule,R., Takeyama,K., Kato,S., Tora,L. and
            Devys,D.
  TITLE     A TFTC/STAGA module mediates histone H2A and H2B deubiquitination,
            coactivates nuclear receptors, and counteracts heterochromatin
            silencing
  JOURNAL   Mol Cell 29 (1), 92-101 (2008)
   PUBMED   18206972
REFERENCE   6  (bases 1 to 5033)
  AUTHORS   Guermah,M., Ge,K., Chiang,C.M. and Roeder,R.G.
  TITLE     The TBN protein, which is essential for early embryonic mouse
            development, is an inducible TAFII implicated in adipogenesis
  JOURNAL   Mol Cell 12 (4), 991-1001 (2003)
   PUBMED   14580349
REFERENCE   7  (bases 1 to 5033)
  AUTHORS   Loebel,D.A., O'Rourke,M.P., Steiner,K.A., Banyer,J. and Tam,P.P.
  TITLE     Isolation of differentially expressed genes from wild-type and
            Twist mutant mouse limb buds
  JOURNAL   Genesis 33 (3), 103-113 (2002)
   PUBMED   12124942
REFERENCE   8  (bases 1 to 5033)
  AUTHORS   Brand,M., Moggs,J.G., Oulad-Abdelghani,M., Lejeune,F.,
            Dilworth,F.J., Stevenin,J., Almouzni,G. and Tora,L.
  TITLE     UV-damaged DNA-binding protein in the TFTC complex links DNA damage
            recognition to nucleosome acetylation
  JOURNAL   EMBO J 20 (12), 3187-3196 (2001)
   PUBMED   11406595
REFERENCE   9  (bases 1 to 5033)
  AUTHORS   Brand,M., Yamamoto,K., Staub,A. and Tora,L.
  TITLE     Identification of TATA-binding protein-free TAFII-containing
            complex subunits suggests a role in nucleosome acetylation and
            signal transduction
  JOURNAL   J Biol Chem 274 (26), 18285-18289 (1999)
   PUBMED   10373431
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC137950.16.
            
            On Feb 6, 2007 this sequence version replaced XM_885934.2.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK147903.1, BC147638.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMN00849374,
                                           SAMN00849375 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-306               AC137950.16        37464-37769
            307-361             AC137950.16        38169-38223
            362-522             AC137950.16        43596-43756
            523-641             AC137950.16        44910-45028
            642-783             AC137950.16        46482-46623
            784-1015            AC137950.16        47332-47563
            1016-1200           AC137950.16        49529-49713
            1201-1314           AC137950.16        50704-50817
            1315-1414           AC137950.16        53730-53829
            1415-1500           AC137950.16        55297-55382
            1501-1636           AC137950.16        57365-57500
            1637-1791           AC137950.16        60067-60221
            1792-1906           AC137950.16        60875-60989
            1907-2016           AC137950.16        61281-61390
            2017-2082           AC137950.16        62133-62198
            2083-2335           AC137950.16        63628-63880
            2336-2476           AC137950.16        66367-66507
            2477-2587           AC137950.16        69143-69253
            2588-2781           AC137950.16        71184-71377
            2782-2921           AC137950.16        72959-73098
            2922-2991           AC137950.16        75384-75453
            2992-3101           AC137950.16        78461-78570
            3102-3331           AC137950.16        81069-81298
            3332-3437           AC137950.16        82339-82444
            3438-3560           AC137950.16        87292-87414
            3561-5033           AC137950.16        93015-94487
FEATURES             Location/Qualifiers
     source          1..5033
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10090"
                     /chromosome="15"
                     /map="15 21.96 cM"
     gene            1..5033
                     /gene="Taf2"
                     /gene_synonym="4732460C16Rik; CIF150; TAF2B; TAFII-150;
                     TAFII150"
                     /note="TATA-box binding protein associated factor 2"
                     /db_xref="GeneID:319944"
                     /db_xref="MGI:MGI:2443028"
     exon            1..306
                     /gene="Taf2"
                     /gene_synonym="4732460C16Rik; CIF150; TAF2B; TAFII-150;
                     TAFII150"
                     /inference="alignment:Splign:2.1.0"
     exon            307..361
                     /gene="Taf2"
                     /gene_synonym="4732460C16Rik; CIF150; TAF2B; TAFII-150;
                     TAFII150"
                     /inference="alignment:Splign:2.1.0"
     exon            362..522
                     /gene="Taf2"
                     /gene_synonym="4732460C16Rik; CIF150; TAF2B; TAFII-150;
                     TAFII150"
                     /inference="alignment:Splign:2.1.0"
     exon            523..641
                     /gene="Taf2"
                     /gene_synonym="4732460C16Rik; CIF150; TAF2B; TAFII-150;
                     TAFII150"
                     /inference="alignment:Splign:2.1.0"
     exon            642..783
                     /gene="Taf2"
                     /gene_synonym="4732460C16Rik; CIF150; TAF2B; TAFII-150;
                     TAFII150"
                     /inference="alignment:Splign:2.1.0"
     exon            784..1015
                     /gene="Taf2"
                     /gene_synonym="4732460C16Rik; CIF150; TAF2B; TAFII-150;
                     TAFII150"
                     /inference="alignment:Splign:2.1.0"
     exon            1016..1200
                     /gene="Taf2"
                     /gene_synonym="4732460C16Rik; CIF150; TAF2B; TAFII-150;
                     TAFII150"
                     /inference="alignment:Splign:2.1.0"
     exon            1201..1314
                     /gene="Taf2"
                     /gene_synonym="4732460C16Rik; CIF150; TAF2B; TAFII-150;
                     TAFII150"
                     /inference="alignment:Splign:2.1.0"
     exon            1315..1414
                     /gene="Taf2"
                     /gene_synonym="4732460C16Rik; CIF150; TAF2B; TAFII-150;
                     TAFII150"
                     /inference="alignment:Splign:2.1.0"
     exon            1415..1500
                     /gene="Taf2"
                     /gene_synonym="4732460C16Rik; CIF150; TAF2B; TAFII-150;
                     TAFII150"
                     /inference="alignment:Splign:2.1.0"
     exon            1501..1636
                     /gene="Taf2"
                     /gene_synonym="4732460C16Rik; CIF150; TAF2B; TAFII-150;
                     TAFII150"
                     /inference="alignment:Splign:2.1.0"
     exon            1637..1791
                     /gene="Taf2"
                     /gene_synonym="4732460C16Rik; CIF150; TAF2B; TAFII-150;
                     TAFII150"
                     /inference="alignment:Splign:2.1.0"
     exon            1792..1906
                     /gene="Taf2"
                     /gene_synonym="4732460C16Rik; CIF150; TAF2B; TAFII-150;
                     TAFII150"
                     /inference="alignment:Splign:2.1.0"
     exon            1907..2016
                     /gene="Taf2"
                     /gene_synonym="4732460C16Rik; CIF150; TAF2B; TAFII-150;
                     TAFII150"
                     /inference="alignment:Splign:2.1.0"
     exon            2017..2082
                     /gene="Taf2"
                     /gene_synonym="4732460C16Rik; CIF150; TAF2B; TAFII-150;
                     TAFII150"
                     /inference="alignment:Splign:2.1.0"
     exon            2083..2335
                     /gene="Taf2"
                     /gene_synonym="4732460C16Rik; CIF150; TAF2B; TAFII-150;
                     TAFII150"
                     /inference="alignment:Splign:2.1.0"
     exon            2336..2476
                     /gene="Taf2"
                     /gene_synonym="4732460C16Rik; CIF150; TAF2B; TAFII-150;
                     TAFII150"
                     /inference="alignment:Splign:2.1.0"
     exon            2477..2587
                     /gene="Taf2"
                     /gene_synonym="4732460C16Rik; CIF150; TAF2B; TAFII-150;
                     TAFII150"
                     /inference="alignment:Splign:2.1.0"
     exon            2588..2781
                     /gene="Taf2"
                     /gene_synonym="4732460C16Rik; CIF150; TAF2B; TAFII-150;
                     TAFII150"
                     /inference="alignment:Splign:2.1.0"
     exon            2782..2921
                     /gene="Taf2"
                     /gene_synonym="4732460C16Rik; CIF150; TAF2B; TAFII-150;
                     TAFII150"
                     /inference="alignment:Splign:2.1.0"
     exon            2922..2991
                     /gene="Taf2"
                     /gene_synonym="4732460C16Rik; CIF150; TAF2B; TAFII-150;
                     TAFII150"
                     /inference="alignment:Splign:2.1.0"
     exon            2992..3101
                     /gene="Taf2"
                     /gene_synonym="4732460C16Rik; CIF150; TAF2B; TAFII-150;
                     TAFII150"
                     /inference="alignment:Splign:2.1.0"
     exon            3102..3331
                     /gene="Taf2"
                     /gene_synonym="4732460C16Rik; CIF150; TAF2B; TAFII-150;
                     TAFII150"
                     /inference="alignment:Splign:2.1.0"
     exon            3332..3437
                     /gene="Taf2"
                     /gene_synonym="4732460C16Rik; CIF150; TAF2B; TAFII-150;
                     TAFII150"
                     /inference="alignment:Splign:2.1.0"
     exon            3438..3560
                     /gene="Taf2"
                     /gene_synonym="4732460C16Rik; CIF150; TAF2B; TAFII-150;
                     TAFII150"
                     /inference="alignment:Splign:2.1.0"
     exon            3561..5033
                     /gene="Taf2"
                     /gene_synonym="4732460C16Rik; CIF150; TAF2B; TAFII-150;
                     TAFII150"
                     /inference="alignment:Splign:2.1.0"
     regulatory      5009..5014
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Taf2"
                     /gene_synonym="4732460C16Rik; CIF150; TAF2B; TAFII-150;
                     TAFII150"
                     /note="hexamer: AATAAA"
     polyA_site      5031
                     /gene="Taf2"
                     /gene_synonym="4732460C16Rik; CIF150; TAF2B; TAFII-150;
                     TAFII150"
                     /note="major polyA site"
ORIGIN      
        1 agaggtgacc ggcaagatgt ccgcaggcgg cggcggccgc ttagagctcc tgtagcgcgg
       61 ctcatctgtg tgacaggggc cgggcggagg cggctgagag tggtcgggga ggggacagga
      121 ggcggaggac gggtggctag gcgctccggg tgcacgggcc gctaccggga atgcgctgca
      181 gcgccccgtg cagcctgaaa ggcgagcccc gcaggagctc ttcatgccgc ccaccggctt
      241 agagtcctcc aggatgaaca ggaagaaagg agacaagggc ttcgaaagcc cacggccgta
      301 caaattaacc catcaggtcg tctgtatcaa caacataaac ttccagcgaa aatcagttgt
      361 gggatttgtg gagctgacta tatttcccac agttgccaac ttgaatagaa ttaagttgaa
      421 cagtaaacag tgtagaatat accgagtccg gatcaatgac ttggaggccg cttttattta
      481 taatgatcca accttagaag tttgtcacag tgaatcgaaa cagagaaacc tcaattattt
      541 ttccaatgcg tatgcagctg cagtcagtgc tgtggaccct gatgcgggga atggagaact
      601 ctgcattaag gttccctcag agctctggaa acatgtcgat gagttgaagg tcctgaagat
      661 acatattaat ttttctttgg atcaaccaaa aggaggtctt cattttgtgg tacccagtgt
      721 agaggggagt atggcagaga gaggtgctca tgtcttctct tgcgggtatc aaaattctac
      781 aagattttgg ttcccgtgtg tcgattcata ctctgagctg tgtacctgga agttagaatt
      841 tacagtagat gctgcaatgg tagccgtgtc caatggagat ttggtggaga ccgtgtatac
      901 ccatgacatg aggaagaaga ccttccatta tatgcttact attcctactg cagcatccaa
      961 tatctccttg gccattggac catttgaaat actcgtggat ccatacatgc atgaggttac
     1021 ccatttttgt ttgcctcaac ttcttccgtt acttaaacat actacgtcat acattcacga
     1081 agtttttgaa ttttatgaag aaattttgac ttgtcgctat ccgtactcct gttttaagac
     1141 ggtcttcatt gatgaggcat atgttgaagt ggccgcttac gcttctatga gcattttcag
     1201 cacaaacctt ctgcacagcg ccatgattat agacgagacg ccgctgacca gacggtgctt
     1261 ggcacaggct ttagcacagc agttcttcgg atgtttcata tccaggatgt cttggtctga
     1321 tgaatgggtg ctgaagggaa tttcaggcta tatttatgga ctgtggatga aaaaaacatt
     1381 cggagtcaat gagtaccacc attggattaa agaggagcta gataaaatag tggcgtatga
     1441 actgaaaact gggggagttt tgcttcatcc catatttggt ggtggaaaag aaaaggataa
     1501 ccccgcatct cacctccact tttccataaa gcatccacat acactgtcct gggagtacta
     1561 cactatgttc cagtgtaaag ctcacctcgt gatgagactg attgaaaaca gaatcagcat
     1621 ggaatttatg ctgcaagttt tcaataaact actaagtctg gccagcactg cttcgtctca
     1681 gaagttccag tcacatatgt ggagccagat gctggtttcc acttacgggt ttttgaagtc
     1741 catttccaat gtctctggca aagacatcca gcccctaata aagcagtggg tagaccagag
     1801 tggagtggta aagttttacg gaagttttgc gtttaataga aaacgaaatg ttttagaact
     1861 agaaataaag caagattaca catctcctgg cacccagaag tacgtgggac ctcttaaagt
     1921 gacagtgcaa gagttagatg gatccttcaa ccataccttg caaattgaag aaaacagcct
     1981 taaacatgac ataccctgcc actccaagag cagaaggaat aagaagaaaa aaatcccact
     2041 gatgaatggg gaagaagttg atatggatct ttctgcaatg gatgctgatt cccctttgtt
     2101 gtggataagg atagacccag atatgtccgt cctgaggaag gtggagtttg agcaggctga
     2161 ttttatgtgg cagtatgagc tccgctatga gagagatgtt gttgctcagc aggaatccat
     2221 cttggccttg gaaaaattcc ccactccggc atcgcgcctt gcgctcactg atatactaga
     2281 gcaagagcag tgtttctacc gagtcaggat gtcagcgtgc ttctgtcttg caaagattgc
     2341 caactcaatg gtgagcacgt ggacagggcc gccagccatg aagtctctct ttactagaat
     2401 gttctgctgt aaaacctgcc ccaacattgt gaagacaaac aacttcatga gtttccaaag
     2461 ctactttctg cagaagacta tgccggttgc aatggctttg ttaagagatg tacataacct
     2521 ttgtcctaaa gaagttttaa catttatttt agacttaatc aagtacaatg acaacagaaa
     2581 aaataagttt tcagataact attatcgtgc agaaatgatt gatgcccttg ctaactcagt
     2641 tacacctgct gtcagtgtga ataatgaagt cagaactttg gataacttaa atcctgatgt
     2701 gcgactaatt cttgaagaaa taacccggtt tctgaatatg gaaaagcttc tcccaagtta
     2761 cagacacacc atcactgtca gttgcttgag agccatccgg gtgcttcaga agaacgggca
     2821 cgtgccgagt gatgcatctc tcttcaaatc ctacgccgag tatggccact ttgtggacat
     2881 caggatagca gctctggaag ccgtcgttga ttacactaaa gtggacagga gttatgaaga
     2941 acttcagtgg ctacttaata tgattcagac tgaccctgtt ccctatgtga ggcataagat
     3001 tctaaacatg ctgactaaaa atccaccatt tacaaagaac atggaatctc ctttatgcaa
     3061 cgaagccctg gtagatcagc tctggaagct gatgaattct ggcactgcac atgactggag
     3121 gttacggtgt ggtgctgtgg acttgtactt cacgctgttt ggcctcagca gaccgtcttg
     3181 cttacccttg ccagagctcg ggcttgttct taacctaaaa gagaagaaag ctgtcttgaa
     3241 tcctaccatt attccagaag ctggagtagg caaccaggag tctgcgagta acccaggctg
     3301 ccacgctcag ctagctggat tccagaaccc tttttcaagt tctcaggatg aggaggaggt
     3361 tgacatggat actgttcatg acagtcaagc cttcatctcc catcatctga acatgctcga
     3421 aaggccgtcc actccagggc tctctaagta ccggccgtcc ggctccagat cctccttaat
     3481 gccccagcat tcattaggct gtgacatcac accacccaca aaaccccagt ggagtatgga
     3541 gctgtcccga aagggagcag gtaaagagca gcctttggag atgggtgtgc attccatggt
     3601 ggcagccccg ctctccatgt ttgctaagga ggctctgtca tcgcgacaca gcgagcacca
     3661 tcaccaccat caccatgagc acaagaagaa gaagaagaag cacaagcaca aacacaagca
     3721 caagcacaag cacgacagca aggacaagga cagggagccc ttcgccttct ccagccctgc
     3781 cagcggcagg tctgtgcgct ccccctcact ctcagactga agcctggtcc tctgtggaga
     3841 cacaagcagg gagtgtggag agactgcaga ggatgtctat ttgtatgcct gaggtttata
     3901 taggaatgag tgtattggct ctggatgaat gttcccccca ccccagtccc ccccattctt
     3961 cctgaaaaca gaggatgact tttataaaag ccttcctgtc cactgcaggc ccattcagat
     4021 gctggtctcc tgtggaccca caaagtcagg tatgcttgaa agcctttgat ggatgtcaga
     4081 ggcagaagga ccttttcaac agaaacaact gccagatctg tgggacccag cggttccatg
     4141 aagtgctgaa taccgccact tggaattgct ggagaggctg ttgtgtagga ctcaatccct
     4201 cgactgcttt ttgtgttagc cattgaaact gaacaccgtc atttatgagc aaagagtctt
     4261 atatttcttt ttaccctaaa gtacaaaaag ttttgaaaga aattattttt taaaaaattt
     4321 aaagtaacta tcttttggta gtacatttgg tgattatgat gttgcaatgt agcagatgca
     4381 acattattct ccagtcaaga tgtttaaatt atgttttgtt ttgtcttcca ttaagtgcaa
     4441 gtgaatgtgt tcatatgtaa aatatctctt gctgaatgtg gacagtttac acacttaaca
     4501 catattcttt ctaaaattac tctgtacata ataagccagg catggttgtg catgcctgta
     4561 attccagcag ttgggaagtc ggaggatcat tcaaggccag cccgagatac atgagaatct
     4621 gtgtcaaaaa agcaaagtga caaacgttac tctgtctaac aaaacatgat actctgaaag
     4681 ggtgtcttta tttgctgttt gcgagcttgg atatagataa tttggcccac actggagtat
     4741 accagcaaca gtttaaaata catgtgccat gctttggttt cgtattttaa aagtttgtat
     4801 ggttttatgt tttggttttg attttaggtt tttggttttc tgaatttacc aggttctgtg
     4861 ttaaaaaata ttttcatatc tattcagttt tattatttct tttgttacta aatatttgac
     4921 tcatttcttg atctcagaat aaatatttca aaggggatcc aaaaatgctg gacttttaaa
     4981 tatactttta gttatattta acttgtttaa taaataactt tttaagttgg aca
//
