LOCUS       NM_029248               1148 bp    mRNA    linear   ROD 07-OCT-2024
DEFINITION  Mus musculus TATA-box binding protein associated factor, RNA
            polymerase I, D (Taf1d), transcript variant 2, mRNA.
ACCESSION   NM_029248
VERSION     NM_029248.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 1148)
  AUTHORS   Adams,D.J., Barlas,B., McIntyre,R.E., Salguero,I., van der
            Weyden,L., Barros,A., Vicente,J.R., Karimpour,N., Haider,A.,
            Ranzani,M., Turner,G., Thompson,N.A., Harle,V., Olvera-Leon,R.,
            Robles-Espinoza,C.D., Speak,A.O., Geisler,N., Weninger,W.J.,
            Geyer,S.H., Hewinson,J., Karp,N.A., Fu,B., Yang,F., Kozik,Z.,
            Choudhary,J., Yu,L., van Ruiten,M.S., Rowland,B.D., Lelliott,C.J.,
            Del Castillo Velasco-Herrera,M., Verstraten,R., Bruckner,L.,
            Henssen,A.G., Rooimans,M.A., de Lange,J., Mohun,T.J., Arends,M.J.,
            Kentistou,K.A., Coelho,P.A., Zhao,Y., Zecchini,H., Perry,J.R.B.,
            Jackson,S.P. and Balmus,G.
  CONSRTM   Sanger Mouse Genetics Project
  TITLE     Genetic determinants of micronucleus formation in vivo
  JOURNAL   Nature 627 (8002), 130-136 (2024)
   PUBMED   38355793
REFERENCE   2  (bases 1 to 1148)
  AUTHORS   Tscherner,A.K., McClatchie,T., Macaulay,A.D. and Baltz,J.M.
  TITLE     Relationship of quantitative reverse transcription polymerase chain
            reaction (RT-PCR) to RNA Sequencing (RNAseq) transcriptome
            identifies mouse preimplantation embryo reference genesdagger
  JOURNAL   Biol Reprod 109 (5), 601-617 (2023)
   PUBMED   37669129
REFERENCE   3  (bases 1 to 1148)
  AUTHORS   Percharde,M., Wong,P. and Ramalho-Santos,M.
  TITLE     Global Hypertranscription in the Mouse Embryonic Germline
  JOURNAL   Cell Rep 19 (10), 1987-1996 (2017)
   PUBMED   28591571
REFERENCE   4  (bases 1 to 1148)
  AUTHORS   Murano,K., Okuwaki,M., Momose,F., Kumakura,M., Ueshima,S.,
            Newbold,R.F. and Nagata,K.
  TITLE     Reconstitution of human rRNA gene transcription in mouse cells by a
            complete SL1 complex
  JOURNAL   J Cell Sci 127 (Pt 15), 3309-3319 (2014)
   PUBMED   24928901
REFERENCE   5  (bases 1 to 1148)
  AUTHORS   Stryke,D., Kawamoto,M., Huang,C.C., Johns,S.J., King,L.A.,
            Harper,C.A., Meng,E.C., Lee,R.E., Yee,A., L'Italien,L.,
            Chuang,P.T., Young,S.G., Skarnes,W.C., Babbitt,P.C. and Ferrin,T.E.
  TITLE     BayGenomics: a resource of insertional mutations in mouse embryonic
            stem cells
  JOURNAL   Nucleic Acids Res 31 (1), 278-281 (2003)
   PUBMED   12520002
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            BU850945.1, AK016109.1, BC117070.1 and AU044383.1.
            
            On Sep 3, 2009 this sequence version replaced NM_029248.1.
            
            Transcript Variant: This variant (2) encodes the longer protein
            (isoform 2).
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK016109.1, SRR7345562.2422681.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849383, SAMN00849384
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-46                BU850945.1         5-50
            47-921              AK016109.1         1-875
            922-1093            BC117070.1         854-1025
            1094-1148           AU044383.1         1-55                c
FEATURES             Location/Qualifiers
     source          1..1148
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="9"
                     /map="9 4.78 cM"
     gene            1..1148
                     /gene="Taf1d"
                     /gene_synonym="2810003M17Rik; 4930553M18Rik;
                     5930426I11Rik; Josd3; TAF(I)41; TAFI41"
                     /note="TATA-box binding protein associated factor, RNA
                     polymerase I, D"
                     /db_xref="GeneID:75316"
                     /db_xref="MGI:MGI:1922566"
     exon            1..70
                     /gene="Taf1d"
                     /gene_synonym="2810003M17Rik; 4930553M18Rik;
                     5930426I11Rik; Josd3; TAF(I)41; TAFI41"
                     /inference="alignment:Splign:2.1.0"
     exon            71..164
                     /gene="Taf1d"
                     /gene_synonym="2810003M17Rik; 4930553M18Rik;
                     5930426I11Rik; Josd3; TAF(I)41; TAFI41"
                     /inference="alignment:Splign:2.1.0"
     exon            165..555
                     /gene="Taf1d"
                     /gene_synonym="2810003M17Rik; 4930553M18Rik;
                     5930426I11Rik; Josd3; TAF(I)41; TAFI41"
                     /inference="alignment:Splign:2.1.0"
     exon            556..731
                     /gene="Taf1d"
                     /gene_synonym="2810003M17Rik; 4930553M18Rik;
                     5930426I11Rik; Josd3; TAF(I)41; TAFI41"
                     /inference="alignment:Splign:2.1.0"
     exon            732..783
                     /gene="Taf1d"
                     /gene_synonym="2810003M17Rik; 4930553M18Rik;
                     5930426I11Rik; Josd3; TAF(I)41; TAFI41"
                     /inference="alignment:Splign:2.1.0"
     exon            784..952
                     /gene="Taf1d"
                     /gene_synonym="2810003M17Rik; 4930553M18Rik;
                     5930426I11Rik; Josd3; TAF(I)41; TAFI41"
                     /inference="alignment:Splign:2.1.0"
     exon            953..1148
                     /gene="Taf1d"
                     /gene_synonym="2810003M17Rik; 4930553M18Rik;
                     5930426I11Rik; Josd3; TAF(I)41; TAFI41"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gcgagatttc gtccttgtcc tagtccggct gctgggcgcc gggagcgctc ttttcgacgc
       61 ggcggaagag aaaattggga aaggccgcga aaagtgatgg ctcaatcaga agtgaattct
      121 gtctgtgtgg catcggatag agctggagat actggagacc aaagtgatga ctcctctgat
      181 ggcagcttat ttaaaactca gtgtgctcct tcacctatac aaaagcaaag acaccctact
      241 gtgaaacgtg ttactttacc tgcaagtgtt gaaacagatt catcaagtga ctcttctata
      301 gaaccaaggc ctctgacttt aaaggctatt tttgaaagat ttaaaaaaaa gaaacggaaa
      361 aagaggaaaa agagaaaata tgagccaaaa ttaagaccaa gaggaagacc aagaggaaaa
      421 ccatcgggaa cgaggatcac tagaaggtcg caaatagatg caaaacaaat taaagacaaa
      481 ggagctgtgt ttccattctt agaatctgag agtggaagaa aacctttacc ttggaagaaa
      541 attttaacat atgagcaagc tgttgcaaga ggattttttc accacattga aaaactcaag
      601 tatgaacacc accttaagga atgcttgaag caaatgcatg ctggggaaga tttagaaaag
      661 gaagaccttg acagtcggag gcacaaatac atggatgatg atggttcact ttctcctatt
      721 gaagagccat taactgaaga tgaagcaaca aatcctcagg ctgaatgtga tatcaagttg
      781 gttgaagaca gttgcttcat aataagttca gaattctcaa ggaagagaaa cttggaacaa
      841 gagaagatta agaaagaatc tacattttct aaaaaagcca aagatgccac acacagagag
      901 aaagggcaca gaagaacctt gaaaggaaat gaacatgtga ctattgaaga agattcaaga
      961 ccccagcctc gcccttttgc tcatctgcag agcaaggtca tgaagaaagg agagttagag
     1021 tatctggagg ttcaccacct ctgtggtctg tcgcagccac tatgactatg aggaggaaga
     1081 gatgatttga aaattggatt aaactcctgg actcttatac tagaaaaaat aaactaatga
     1141 taaaaccc
//
