LOCUS       NM_025444               1289 bp    mRNA    linear   ROD 05-JUN-2024
DEFINITION  Mus musculus TATA-box binding protein associated factor 13 (Taf13),
            mRNA.
ACCESSION   NM_025444
VERSION     NM_025444.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 1289)
  AUTHORS   He,X.D., Phillips,S., Hioki,K., Majhi,P.D., Babbitt,C.,
            Tremblay,K.D., Pobezinsky,L.A. and Mager,J.
  TITLE     TATA-binding associated factors have distinct roles during early
            mammalian development
  JOURNAL   Dev Biol 511, 53-62 (2024)
   PUBMED   38593904
REFERENCE   2  (bases 1 to 1289)
  AUTHORS   Adams,D.J., Barlas,B., McIntyre,R.E., Salguero,I., van der
            Weyden,L., Barros,A., Vicente,J.R., Karimpour,N., Haider,A.,
            Ranzani,M., Turner,G., Thompson,N.A., Harle,V., Olvera-Leon,R.,
            Robles-Espinoza,C.D., Speak,A.O., Geisler,N., Weninger,W.J.,
            Geyer,S.H., Hewinson,J., Karp,N.A., Fu,B., Yang,F., Kozik,Z.,
            Choudhary,J., Yu,L., van Ruiten,M.S., Rowland,B.D., Lelliott,C.J.,
            Del Castillo Velasco-Herrera,M., Verstraten,R., Bruckner,L.,
            Henssen,A.G., Rooimans,M.A., de Lange,J., Mohun,T.J., Arends,M.J.,
            Kentistou,K.A., Coelho,P.A., Zhao,Y., Zecchini,H., Perry,J.R.B.,
            Jackson,S.P. and Balmus,G.
  CONSRTM   Sanger Mouse Genetics Project
  TITLE     Genetic determinants of micronucleus formation in vivo
  JOURNAL   Nature 627 (8002), 130-136 (2024)
   PUBMED   38355793
REFERENCE   3  (bases 1 to 1289)
  AUTHORS   El-Saafin,F., Bergamasco,M.I., Chen,Y., May,R.E., Esakky,P.,
            Hediyeh-Zadeh,S., Dixon,M., Wilcox,S., Davis,M.J., Strasser,A.,
            Smyth,G.K., Thomas,T. and Voss,A.K.
  TITLE     Loss of TAF8 causes TFIID dysfunction and p53-mediated apoptotic
            neuronal cell death
  JOURNAL   Cell Death Differ 29 (5), 1013-1027 (2022)
   PUBMED   35361962
REFERENCE   4  (bases 1 to 1289)
  AUTHORS   Bardot,P., Vincent,S.D., Fournier,M., Hubaud,A., Joint,M., Tora,L.
            and Pourquie,O.
  TITLE     The TAF10-containing TFIID and SAGA transcriptional complexes are
            dispensable for early somitogenesis in the mouse embryo
  JOURNAL   Development 144 (20), 3808-3818 (2017)
   PUBMED   28893950
REFERENCE   5  (bases 1 to 1289)
  AUTHORS   Langer,D., Martianov,I., Alpern,D., Rhinn,M., Keime,C., Dolle,P.,
            Mengus,G. and Davidson,I.
  TITLE     Essential role of the TFIID subunit TAF4 in murine embryogenesis
            and embryonic stem cell differentiation
  JOURNAL   Nat Commun 7, 11063 (2016)
   PUBMED   27026076
  REMARK    Publication Status: Online-Only
REFERENCE   6  (bases 1 to 1289)
  AUTHORS   Kamileri,I., Karakasilioti,I., Sideri,A., Kosteas,T., Tatarakis,A.,
            Talianidis,I. and Garinis,G.A.
  TITLE     Defective transcription initiation causes postnatal growth failure
            in a mouse model of nucleotide excision repair (NER) progeria
  JOURNAL   Proc Natl Acad Sci U S A 109 (8), 2995-3000 (2012)
   PUBMED   22323595
REFERENCE   7  (bases 1 to 1289)
  AUTHORS   Ravasi,T., Suzuki,H., Cannistraci,C.V., Katayama,S., Bajic,V.B.,
            Tan,K., Akalin,A., Schmeier,S., Kanamori-Katayama,M., Bertin,N.,
            Carninci,P., Daub,C.O., Forrest,A.R., Gough,J., Grimmond,S.,
            Han,J.H., Hashimoto,T., Hide,W., Hofmann,O., Kamburov,A., Kaur,M.,
            Kawaji,H., Kubosaki,A., Lassmann,T., van Nimwegen,E.,
            MacPherson,C.R., Ogawa,C., Radovanovic,A., Schwartz,A.,
            Teasdale,R.D., Tegner,J., Lenhard,B., Teichmann,S.A., Arakawa,T.,
            Ninomiya,N., Murakami,K., Tagami,M., Fukuda,S., Imamura,K., Kai,C.,
            Ishihara,R., Kitazume,Y., Kawai,J., Hume,D.A., Ideker,T. and
            Hayashizaki,Y.
  TITLE     An atlas of combinatorial transcriptional regulation in mouse and
            man
  JOURNAL   Cell 140 (5), 744-752 (2010)
   PUBMED   20211142
  REMARK    Erratum:[Cell. 2010 Apr 16;141(2):369. Kamburov, Atanas [added];
            Kaur, Mandeep [added]; MacPherson, Cameron Ross [added];
            Radovanovic, Aleksandar [added]; Schwartz, Ariel [added]]
REFERENCE   8  (bases 1 to 1289)
  AUTHORS   Yokoyama,S., Ito,Y., Ueno-Kudoh,H., Shimizu,H., Uchibe,K.,
            Albini,S., Mitsuoka,K., Miyaki,S., Kiso,M., Nagai,A., Hikata,T.,
            Osada,T., Fukuda,N., Yamashita,S., Harada,D., Mezzano,V., Kasai,M.,
            Puri,P.L., Hayashizaki,Y., Okado,H., Hashimoto,M. and Asahara,H.
  TITLE     A systems approach reveals that the myogenesis genome network is
            regulated by the transcriptional repressor RP58
  JOURNAL   Dev Cell 17 (6), 836-848 (2009)
   PUBMED   20059953
REFERENCE   9  (bases 1 to 1289)
  AUTHORS   Tatarakis,A., Margaritis,T., Martinez-Jimenez,C.P., Kouskouti,A.,
            Mohan,W.S. 2nd, Haroniti,A., Kafetzopoulos,D., Tora,L. and
            Talianidis,I.
  TITLE     Dominant and redundant functions of TFIID involved in the
            regulation of hepatic genes
  JOURNAL   Mol Cell 31 (4), 531-543 (2008)
   PUBMED   18722179
REFERENCE   10 (bases 1 to 1289)
  AUTHORS   Suzuki,H., Fukunishi,Y., Kagawa,I., Saito,R., Oda,H., Endo,T.,
            Kondo,S., Bono,H., Okazaki,Y. and Hayashizaki,Y.
  TITLE     Protein-protein interaction panel using mouse full-length cDNAs
  JOURNAL   Genome Res 11 (10), 1758-1765 (2001)
   PUBMED   11591653
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from AK007339.1.
            
            On Apr 5, 2007 this sequence version replaced NM_025444.1.
            
            Publication Note:  This RefSeq record includes a subset of the
            publications that are available for this gene. Please see the Gene
            record to access additional publications.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK007339.1, AK076595.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849380, SAMN00849381
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-1289              AK007339.1         2-1290
FEATURES             Location/Qualifiers
     source          1..1289
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="3"
                     /map="3 47.34 cM"
     gene            1..1289
                     /gene="Taf13"
                     /gene_synonym="1810004N01Rik; 2010309N11Rik; TAFII18"
                     /note="TATA-box binding protein associated factor 13"
                     /db_xref="GeneID:99730"
                     /db_xref="MGI:MGI:1913500"
     exon            1..50
                     /gene="Taf13"
                     /gene_synonym="1810004N01Rik; 2010309N11Rik; TAFII18"
                     /inference="alignment:Splign:2.1.0"
     CDS             24..398
                     /gene="Taf13"
                     /gene_synonym="1810004N01Rik; 2010309N11Rik; TAFII18"
                     /note="TAF13 RNA polymerase II, TATA box-binding
                     protein-associated factor; TAF13 RNA polymerase II, TATA
                     box binding protein (TBP)-associated factor;
                     TBP-associated factor, RNA polymerase II, K, 18kD;
                     TAFII-18; TAF(II)18; transcription initiation factor TFIID
                     18 kDa subunit"
                     /codon_start=1
                     /product="transcription initiation factor TFIID subunit
                     13"
                     /protein_id="NP_079720.1"
                     /db_xref="CCDS:CCDS17764.1"
                     /db_xref="GeneID:99730"
                     /db_xref="MGI:MGI:1913500"
                     /translation="MADEEEDPTFEEENEEIGGGAEGGQGKRKRLFSKELRCMMYGFG
                     DDQNPYTESVDILEDLVIEFITEMTHKAMSIGRQGRVQVEDIVFLIRKDPRKFARVKD
                     LLTMNEELKRARKAFDEANYGS"
     exon            51..129
                     /gene="Taf13"
                     /gene_synonym="1810004N01Rik; 2010309N11Rik; TAFII18"
                     /inference="alignment:Splign:2.1.0"
     exon            130..227
                     /gene="Taf13"
                     /gene_synonym="1810004N01Rik; 2010309N11Rik; TAFII18"
                     /inference="alignment:Splign:2.1.0"
     exon            228..1289
                     /gene="Taf13"
                     /gene_synonym="1810004N01Rik; 2010309N11Rik; TAFII18"
                     /inference="alignment:Splign:2.1.0"
     regulatory      1263..1268
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Taf13"
                     /gene_synonym="1810004N01Rik; 2010309N11Rik; TAFII18"
                     /note="hexamer: AATAAA"
     polyA_site      1287
                     /gene="Taf13"
                     /gene_synonym="1810004N01Rik; 2010309N11Rik; TAFII18"
                     /note="major polyA site"
ORIGIN      
        1 cagaaggctg gcgagcagct agcatggcag atgaggagga agaccccacc tttgaggagg
       61 agaatgaaga aattggagga ggagcggaag gtggccaggg gaagagaaag agacttttct
      121 cgaaagaatt gcgctgtatg atgtatgggt ttggggacga ccagaatcct tacacggagt
      181 ccgtggacat tctcgaagac cttgtcatag agttcatcac tgaaatgact cacaaggcaa
      241 tgtcgattgg aagacaaggt cgagtgcaag ttgaagatat tgtcttccta attcgaaagg
      301 atccaaggaa gtttgctaga gttaaagact tactaactat gaatgaagaa ttgaaacggg
      361 ctagaaaagc ttttgacgaa gccaactatg gatcttgaca ccgttcgtac ttcccgagat
      421 tttggtattt tctgtggaag ccatacattg aagttgttgt ctgcagtaac atgatagctc
      481 ggtatgcaat gaaagaggtc ttcaactgga gcctccgttg cctgtcttta tctgaccata
      541 tctgaattgc ttcctggctt taataactcc taagttaaag cattgcaaac catgcggttc
      601 cacccgaaag ggtggaagta gtatttattc ttctggtaga cgtgtgtgtt ccaagctgta
      661 taccattgct gcatagcata caatctgaat gtcctttgat tttataaatg gtgaggctgt
      721 gctctgtgta tctcaaggct ttagaggaca gtggtggggg agttattaaa gagaatgagc
      781 tggcttgtgg gggtttttaa gaaacgaaat tcttgactta atagatcatt tgtttttaat
      841 attcttttct aaagaacact ttttttaaaa gaaactaata tttgctaagt gttagcagtc
      901 ctcgtcttcc ttgatgactg taaagcttcc aatacaaatg cctcagtagt gggaacggca
      961 gggcttaaag agccgatgcc agcccaggtg tttctggctg tgctctagtg acggaaatgt
     1021 aagtacttta attgtgagaa cggagagttg attaaatctg tatgtggctg tgcaaaccat
     1081 tttcgcggtt caggctttgt gtgtagttca cttacggtat taaattatta ttctgcttag
     1141 cttataataa ggataattgc atttaaagag gttactgaat gttactctga aacttagtgg
     1201 tgcttttaac atctaaatca gtacttgggg aaatactagc tgtttaatct actgatacaa
     1261 ggaataaaga atgaggaatt aaacacatc
//
