LOCUS       NM_001379368            1242 bp    mRNA    linear   ROD 02-MAY-2024
DEFINITION  Mus musculus TATA-box binding protein associated factor 11 (Taf11),
            transcript variant 1, mRNA.
ACCESSION   NM_001379368 XM_030250026
VERSION     NM_001379368.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 1242)
  AUTHORS   Adams,D.J., Barlas,B., McIntyre,R.E., Salguero,I., van der
            Weyden,L., Barros,A., Vicente,J.R., Karimpour,N., Haider,A.,
            Ranzani,M., Turner,G., Thompson,N.A., Harle,V., Olvera-Leon,R.,
            Robles-Espinoza,C.D., Speak,A.O., Geisler,N., Weninger,W.J.,
            Geyer,S.H., Hewinson,J., Karp,N.A., Fu,B., Yang,F., Kozik,Z.,
            Choudhary,J., Yu,L., van Ruiten,M.S., Rowland,B.D., Lelliott,C.J.,
            Del Castillo Velasco-Herrera,M., Verstraten,R., Bruckner,L.,
            Henssen,A.G., Rooimans,M.A., de Lange,J., Mohun,T.J., Arends,M.J.,
            Kentistou,K.A., Coelho,P.A., Zhao,Y., Zecchini,H., Perry,J.R.B.,
            Jackson,S.P. and Balmus,G.
  CONSRTM   Sanger Mouse Genetics Project
  TITLE     Genetic determinants of micronucleus formation in vivo
  JOURNAL   Nature 627 (8002), 130-136 (2024)
   PUBMED   38355793
REFERENCE   2  (bases 1 to 1242)
  AUTHORS   El-Saafin,F., Bergamasco,M.I., Chen,Y., May,R.E., Esakky,P.,
            Hediyeh-Zadeh,S., Dixon,M., Wilcox,S., Davis,M.J., Strasser,A.,
            Smyth,G.K., Thomas,T. and Voss,A.K.
  TITLE     Loss of TAF8 causes TFIID dysfunction and p53-mediated apoptotic
            neuronal cell death
  JOURNAL   Cell Death Differ 29 (5), 1013-1027 (2022)
   PUBMED   35361962
REFERENCE   3  (bases 1 to 1242)
  AUTHORS   Bardot,P., Vincent,S.D., Fournier,M., Hubaud,A., Joint,M., Tora,L.
            and Pourquie,O.
  TITLE     The TAF10-containing TFIID and SAGA transcriptional complexes are
            dispensable for early somitogenesis in the mouse embryo
  JOURNAL   Development 144 (20), 3808-3818 (2017)
   PUBMED   28893950
REFERENCE   4  (bases 1 to 1242)
  AUTHORS   Langer,D., Martianov,I., Alpern,D., Rhinn,M., Keime,C., Dolle,P.,
            Mengus,G. and Davidson,I.
  TITLE     Essential role of the TFIID subunit TAF4 in murine embryogenesis
            and embryonic stem cell differentiation
  JOURNAL   Nat Commun 7, 11063 (2016)
   PUBMED   27026076
  REMARK    Publication Status: Online-Only
REFERENCE   5  (bases 1 to 1242)
  AUTHORS   Kamileri,I., Karakasilioti,I., Sideri,A., Kosteas,T., Tatarakis,A.,
            Talianidis,I. and Garinis,G.A.
  TITLE     Defective transcription initiation causes postnatal growth failure
            in a mouse model of nucleotide excision repair (NER) progeria
  JOURNAL   Proc Natl Acad Sci U S A 109 (8), 2995-3000 (2012)
   PUBMED   22323595
REFERENCE   6  (bases 1 to 1242)
  AUTHORS   Ravasi,T., Suzuki,H., Cannistraci,C.V., Katayama,S., Bajic,V.B.,
            Tan,K., Akalin,A., Schmeier,S., Kanamori-Katayama,M., Bertin,N.,
            Carninci,P., Daub,C.O., Forrest,A.R., Gough,J., Grimmond,S.,
            Han,J.H., Hashimoto,T., Hide,W., Hofmann,O., Kamburov,A., Kaur,M.,
            Kawaji,H., Kubosaki,A., Lassmann,T., van Nimwegen,E.,
            MacPherson,C.R., Ogawa,C., Radovanovic,A., Schwartz,A.,
            Teasdale,R.D., Tegner,J., Lenhard,B., Teichmann,S.A., Arakawa,T.,
            Ninomiya,N., Murakami,K., Tagami,M., Fukuda,S., Imamura,K., Kai,C.,
            Ishihara,R., Kitazume,Y., Kawai,J., Hume,D.A., Ideker,T. and
            Hayashizaki,Y.
  TITLE     An atlas of combinatorial transcriptional regulation in mouse and
            man
  JOURNAL   Cell 140 (5), 744-752 (2010)
   PUBMED   20211142
  REMARK    Erratum:[Cell. 2010 Apr 16;141(2):369. Kamburov, Atanas [added];
            Kaur, Mandeep [added]; MacPherson, Cameron Ross [added];
            Radovanovic, Aleksandar [added]; Schwartz, Ariel [added]]
REFERENCE   7  (bases 1 to 1242)
  AUTHORS   Yokoyama,S., Ito,Y., Ueno-Kudoh,H., Shimizu,H., Uchibe,K.,
            Albini,S., Mitsuoka,K., Miyaki,S., Kiso,M., Nagai,A., Hikata,T.,
            Osada,T., Fukuda,N., Yamashita,S., Harada,D., Mezzano,V., Kasai,M.,
            Puri,P.L., Hayashizaki,Y., Okado,H., Hashimoto,M. and Asahara,H.
  TITLE     A systems approach reveals that the myogenesis genome network is
            regulated by the transcriptional repressor RP58
  JOURNAL   Dev Cell 17 (6), 836-848 (2009)
   PUBMED   20059953
REFERENCE   8  (bases 1 to 1242)
  AUTHORS   Tatarakis,A., Margaritis,T., Martinez-Jimenez,C.P., Kouskouti,A.,
            Mohan,W.S. 2nd, Haroniti,A., Kafetzopoulos,D., Tora,L. and
            Talianidis,I.
  TITLE     Dominant and redundant functions of TFIID involved in the
            regulation of hepatic genes
  JOURNAL   Mol Cell 31 (4), 531-543 (2008)
   PUBMED   18722179
REFERENCE   9  (bases 1 to 1242)
  AUTHORS   Guermah,M., Ge,K., Chiang,C.M. and Roeder,R.G.
  TITLE     The TBN protein, which is essential for early embryonic mouse
            development, is an inducible TAFII implicated in adipogenesis
  JOURNAL   Mol Cell 12 (4), 991-1001 (2003)
   PUBMED   14580349
REFERENCE   10 (bases 1 to 1242)
  AUTHORS   Suzuki,H., Fukunishi,Y., Kagawa,I., Saito,R., Oda,H., Endo,T.,
            Kondo,S., Bono,H., Okazaki,Y. and Hayashizaki,Y.
  TITLE     Protein-protein interaction panel using mouse full-length cDNAs
  JOURNAL   Genome Res 11 (10), 1758-1765 (2001)
   PUBMED   11591653
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC126040.3.
            
            On Mar 31, 2020 this sequence version replaced XM_030250026.1.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            Publication Note:  This RefSeq record includes a subset of the
            publications that are available for this gene. Please see the Gene
            record to access additional publications.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK050689.1, BC005603.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN01164135, SAMN01164138
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-244               AC126040.3         34933-35176
            245-393             AC126040.3         37267-37415
            394-481             AC126040.3         39489-39576
            482-578             AC126040.3         40053-40149
            579-1242            AC126040.3         40888-41551
FEATURES             Location/Qualifiers
     source          1..1242
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="17"
                     /map="17 14.6 cM"
     gene            1..1242
                     /gene="Taf11"
                     /gene_synonym="1110038O14Rik; PRO214; TAF2I; TAFII28"
                     /note="TATA-box binding protein associated factor 11"
                     /db_xref="GeneID:68776"
                     /db_xref="MGI:MGI:1916026"
     exon            1..244
                     /gene="Taf11"
                     /gene_synonym="1110038O14Rik; PRO214; TAF2I; TAFII28"
                     /inference="alignment:Splign:2.1.0"
     CDS             74..709
                     /gene="Taf11"
                     /gene_synonym="1110038O14Rik; PRO214; TAF2I; TAFII28"
                     /note="TAFII-28; TAF(II)28; TFIID subunit p30-beta;
                     transcription initiation factor TFIID 28 kDa subunit"
                     /codon_start=1
                     /product="transcription initiation factor TFIID subunit
                     11"
                     /protein_id="NP_001366297.1"
                     /db_xref="GeneID:68776"
                     /db_xref="MGI:MGI:1916026"
                     /translation="MDNLGESPTDKGGEPGESEETRATPGALVAADTEGIPEETDRDG
                     DADLKEAAAEESELKSQDVSDVTAAERENSSLLTPAAKKLKLDIKDKKEKKQKVDEDE
                     IQKMQILVSSFSEEQLNRYEMYRRSAFPKAAIKRLIQSITGTSVSQNVVIAMSGISKV
                     FVGEVVEEALDVCEKWGETPPLQPKHMREAVRRLKSKGQIPNSKHKKITFF"
     exon            245..393
                     /gene="Taf11"
                     /gene_synonym="1110038O14Rik; PRO214; TAF2I; TAFII28"
                     /inference="alignment:Splign:2.1.0"
     exon            394..481
                     /gene="Taf11"
                     /gene_synonym="1110038O14Rik; PRO214; TAF2I; TAFII28"
                     /inference="alignment:Splign:2.1.0"
     exon            482..578
                     /gene="Taf11"
                     /gene_synonym="1110038O14Rik; PRO214; TAF2I; TAFII28"
                     /inference="alignment:Splign:2.1.0"
     exon            579..1242
                     /gene="Taf11"
                     /gene_synonym="1110038O14Rik; PRO214; TAF2I; TAFII28"
                     /inference="alignment:Splign:2.1.0"
     regulatory      1217..1222
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Taf11"
                     /gene_synonym="1110038O14Rik; PRO214; TAF2I; TAFII28"
                     /note="hexamer: AATAAA"
     polyA_site      1242
                     /gene="Taf11"
                     /gene_synonym="1110038O14Rik; PRO214; TAF2I; TAFII28"
                     /note="major polyA site"
ORIGIN      
        1 ctcagctcca gctccgctcc acagctcctt ctcccggcgg tgctgccatc gcctctgacc
       61 ccctgctctc gcgatggaca acctcgggga gtcgcccaca gacaaaggcg gggagccagg
      121 ggagtcagag gagacgaggg ctactcctgg ggctttggtg gcagccgaca ctgagggaat
      181 cccggaggaa accgacaggg atggagacgc ggacttgaaa gaagccgcgg cggaggaaag
      241 cgagctcaag agtcaggatg tctcagatgt aacagcagcc gagagggaaa actcgtcctt
      301 acttactcct gcagccaaaa agctgaaact agacattaag gacaagaagg agaagaagca
      361 gaaggtggac gaagatgaga ttcagaagat gcaaatcctg gtctcttctt tttctgagga
      421 gcagctgaac cgttatgaaa tgtatcgcag gtcagctttc cccaaggcgg ccattaaaag
      481 gctgatccag tccatcactg gcacctctgt gtctcagaat gttgtgattg ccatgtctgg
      541 catttctaag gtttttgtcg gggaggtggt agaagaagcc ctggacgtgt gtgagaaatg
      601 gggagaaacg ccacccctgc agcccaagca catgagggag gccgtccgga ggttgaagtc
      661 caaggggcaa atccccaact caaagcacaa gaagatcacc ttcttctaaa tctaagggag
      721 actgttccag acttctcaga gtcgggcttc tgtcctgggg ctttggtggt ggtgagctcg
      781 ggacgcagga tgccgatttt aatgtttcgg tcacacctac aaggcatgca gtgtgactca
      841 gacttgcctt cactcagtca tggactgtcc tcaggcatgt tgaagacttt tactgactct
      901 tggctagttt gaagaaaaaa tatacagggg cctttagtat cttctggaga aggagatggt
      961 ttcagagaaa aacagaacaa ctctagtggc ttcatattga aacctaaagt tgctaagatt
     1021 caggttgttt cttgctctgg ttttcaaaac ataaacttgc gattatctgc ggtgaagtca
     1081 ccgtgacacg cttctcacca ttaacatttc aggttctcct atggattttg tgagggatca
     1141 ttaaactttt ccaacctgtg tgggaaagtt tattttattt tgttgcagac aaaactcatt
     1201 gttcttccta tgttgaaata aaacttggct tttgtttttc aa
//
