LOCUS       XM_017318512            7292 bp    mRNA    linear   ROD 07-FEB-2024
DEFINITION  PREDICTED: Mus musculus TATA-box binding protein associated factor
            1 (Taf1), transcript variant X1, mRNA.
ACCESSION   XM_017318512
VERSION     XM_017318512.2
DBLINK      BioProject: PRJNA169
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000086.8) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Aug 8, 2019 this sequence version replaced XM_017318512.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001635.27-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/01/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7292
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6J"
                     /db_xref="taxon:10090"
                     /chromosome="X"
     gene            1..7292
                     /gene="Taf1"
                     /gene_synonym="B430306D02Rik; Ccg-1; Ccg1; KAT4; N-TAF1;
                     p250; Taf2a; TAFII250"
                     /note="TATA-box binding protein associated factor 1;
                     Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 4 mRNAs, 55 ESTs, 629 long SRA reads, 4
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 7 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:270627"
                     /db_xref="MGI:MGI:1336878"
     CDS             92..5788
                     /gene="Taf1"
                     /gene_synonym="B430306D02Rik; Ccg-1; Ccg1; KAT4; N-TAF1;
                     p250; Taf2a; TAFII250"
                     /codon_start=1
                     /product="transcription initiation factor TFIID subunit 1
                     isoform X1"
                     /protein_id="XP_017174001.1"
                     /db_xref="GeneID:270627"
                     /db_xref="MGI:MGI:1336878"
                     /translation="MGPGWAGLLQDKGGGSPSVVMSDTDSDEESAGGGPFSLTGFLFG
                     NINGAGQLEGESVLDDECKKHLAGLGALGLGSLITELTANEELSGSDGALVNDEGWIR
                     SREDAVDYSDINEVAEDESRRYQQTMGSLQPLCHTDYDEDDYDADCEDIDCKLMPPPP
                     PPPGPLKKEKDQDDITGGYQVQVSEDGEGIILPSIIAPSSLASEKVDFSSSSDSESEM
                     GPQDAAQSESKDGQLTLPLAGIMQHDATKLLPSVTELFPEFRPGKVLRFLRLFGPGKN
                     VPSVWRSARRKRKKKHRELIQEGQVQEEECSVELEVNQKSLWNYDYAPPPLPDQCLSD
                     DEITMMAPVESKFSQSTGDTDKVMDTKPRVAEWRYGPARLWYDMLGVPEDGSGFDYGF
                     KMKKTEHESTIKCNIMKKLRKLEENSGVDLLADENFLMVTQLHWEDDIIWDGEDVKHK
                     GTKPQRASLAGWLPSSMTRNAMAYNVQQGFTATLDDDKPWYSIFPIDNEDLVYGRWED
                     NIIWDAQNMPRILEPPVLTLDPNDENLILEIPDEKEEATSNSPSKENKKESSLKKSRI
                     LLGKTGVIKEEPQQNMSQPEVKDPWNLSNDEYYYPKQQGLRGTFGGNIIQHSIPAVEL
                     RQPFFPTHMGPIKLRQFHRPPLKKYSFGALSQPGPHSVQPLLKHIKKKAKMREQERQA
                     SGGGEMFFMRTPQDLTGKDGDLILAEYSEENGPLMMQVGMATKIKNYYKRKPGKDPGA
                     PDCKYGETVYCHTSPFLGSLHPGQLLQAFENNLFRAPIYLHKMPESDFLIIRTRQGYF
                     IRELVDIFVVGQQCPLFEVPGPNSKRANTHIRDFLQVFIYRLFWKSKDRPRRIRMEDI
                     KKAFPSHSESSIRKRLKLCADFKRTGMDSNWWVLKSDFRLPTEEEIRAMVSPEQCCAY
                     YSMIAAEQRLKDAGYGEKSFFAPEEENEEDFQMKIDDEVRTAPWNTTRAFIAAMKGKC
                     LLEVTGVADPTGCGEGFSYVKIPNKPTQQKDDKEPQPVKKTVTGTDADLRRLSLKNAK
                     QLLRKFGVPEEEIKKLSRWEVIDVVRTMSTEQARSGEGPMSKFARGSRFSVAEHQERY
                     KEECQRIFDLQNKVLSSTEVLSTDTDSSSAEDSDFEEMGKNIENMLQNKKTSSQLSRE
                     REEQERKELQRMLLAAGSAAAGNNHRDDDTASVTSLNSSATGRCLKIYRTFRDEEGKE
                     YVRCETVRKATVIDAYVRIRTTKDEEFIRKFALFDEQHREEMRKERRRIQEQLRRLKR
                     NQEKEKLKGPPEKKPKKMKERPDLKLKCGACGAIGHMRTNKFCPLYYQTNAPPSNPVA
                     MTEEQEEELEKTVIHNDNEELIKVEGTKIVLGKQLIESADEVRRKSLVLKFPKQQLPP
                     KKKRRVGTTVHCDYLNRPHKSIHRRRTDPMVTLSSILESIINDMRDLPNTYPFHTPVN
                     AKVVKDYYKIITRPMDLQTLRENVRKRLYPSREEFREHLELIVKNSATYNGPKHSLTQ
                     ISQSMLDLCDEKLKEKEDKLARLEKAINPLLDDDDQVAFSFILDNIVTQKMMAVPDSW
                     PFHHPVNKKFVPDYYKVIVSPMDLETIRKNISKHKYQSRESFLDDVNLILANSVKYNG
                     PESQYTKTAQEIVNVCHQTLTEYDEHLTQLEKDICTAKEAALEEAELESLDPMTPGPY
                     TPQAKPPDLYDNNTSLSVSRDASVYQDESNLSVLDIPSATSEKQLTQEGGDGDGDLAD
                     EEEGTVQQPQASVLYEDLLMSEGEDDEEDAGSDEEGDNPFFAIQLSESGSDSDVESGS
                     LRPKQPRVLQENTRMGMENEESMMSYEGDGGDASRGLEDSNISYGSYEEPDPKSNTQD
                     TSFSSIGGYEVSEEEEDEEEQRSGPSVLSQVHLSEDEEDSEDFHSIAGDTDLDSDE"
ORIGIN      
        1 cccttttttt caacttccgg tagcctctgg ttgggtcagg gagcgctgca agtcacccgt
       61 gtgcgactga cgtatttttt ctttcccgcc catgggcccg gggtgggctg ggctgctgca
      121 ggacaagggt ggcggtagcc cttccgtcgt catgtccgac acagacagcg acgaagagtc
      181 ggctggtgga ggcccatttt ctctaactgg gttcctgttc ggcaacatca atggagcagg
      241 gcagttggaa ggcgaaagcg tcttggatga cgagtgcaag aagcatcttg cgggcttggg
      301 ggctttgggt cttggcagcc tgatcactga actcacagca aatgaagaat tgtccgggag
      361 tgatggtgcc ctggtaaatg atgaaggatg gattaggagt agagaggatg ctgtggacta
      421 ttctgacatc aacgaggtgg cagaagatga aagtagaaga taccagcaga caatgggaag
      481 cttgcaaccc ctttgccaca cagattatga tgaagatgac tatgatgctg attgtgaaga
      541 tattgattgc aaattgatgc ctcctccacc tccaccccca ggaccactga agaaagagaa
      601 ggaccaagat gatattactg gtgggtacca ggtccaagtg tctgaagatg gagaaggcat
      661 catcttgccc tccatcattg ccccttcctc tttggcctca gagaaagtgg acttcagtag
      721 ttcctctgac tcagaatctg agatgggacc tcaggacgca gcacagtcag aatctaagga
      781 tggacagctg accctaccat tggctgggat tatgcagcat gatgccacga agctgttgcc
      841 aagtgtcaca gaactttttc cagaatttag gcctggaaag gtgttacgct ttttacggct
      901 ttttggaccg gggaagaatg ttccatctgt ttggaggagt gctcggagaa agaggaaaaa
      961 gaagcaccgt gagcttatac aggaagggca ggtccaggaa gaggagtgct cagtggaatt
     1021 agaagtcaac cagaaatctc tgtggaacta tgactatgct cctcctccac ttccagacca
     1081 gtgtctctct gatgatgaaa tcacaatgat ggctcctgtg gagtccaagt tttcccagtc
     1141 aactggagac acagataaag taatggatac caagccaaga gtggccgaat ggcgttatgg
     1201 acctgcccgg ctgtggtatg atatgctagg tgttcctgaa gatggcagtg gctttgatta
     1261 tggcttcaaa atgaagaaga ctgaacatga atctacaata aaatgcaaca taatgaagaa
     1321 attaaggaaa cttgaggaaa acagtggcgt cgatcttctg gcagatgaaa acttcctaat
     1381 ggtgacacag ctgcattggg aagatgatat catttgggat ggggaggatg tcaaacacaa
     1441 aggaacaaaa cctcagcgtg cgagtttggc aggctggctt ccttccagta tgactaggaa
     1501 tgccatggcc tacaatgtgc agcaaggttt tacagctaca ttggatgatg ataaaccttg
     1561 gtactccatt ttccccattg ataatgaaga tctggtatat ggacgttggg aggacaatat
     1621 catttgggat gctcagaaca tgcctagaat tttggagcct cctgttttga cacttgatcc
     1681 caatgatgag aacttgattt tggagatccc tgatgagaag gaagaagcta cttctaattc
     1741 tccttctaag gagaataaga aagaatcatc tctgaagaag agtcgaattc tcttaggaaa
     1801 aacaggagtc atcaaggaag agccacagca gaacatgtct cagccagaag tgaaagatcc
     1861 atggaatctc tccaatgatg agtattacta tcccaagcaa cagggccttc gaggtacttt
     1921 tggaggaaat attatccagc actcaattcc agctgtagaa ttacggcagc ccttctttcc
     1981 tacccacatg ggacccatca aacttcggca gttccatcgc ccacctctaa aaaagtactc
     2041 ctttggggca ctatctcagc caggtccaca ctcagttcag cctttgctga agcacatcaa
     2101 aaagaaggca aagatgagag aacaagagag gcaagcctcg ggtggtggag agatgttttt
     2161 tatgcgcaca cctcaggatc tcacaggcaa agatggagac cttattcttg ctgaatacag
     2221 tgaggaaaat ggaccattaa tgatgcaagt tggcatggca accaagataa aaaactacta
     2281 taagcggaaa cctggaaaag atcctggagc cccagattgc aaatacggag aaactgttta
     2341 ttgccataca tcgcctttcc tgggttctct tcatcctggc cagttactgc aggcatttga
     2401 gaacaacctt tttcgtgctc caatttatct tcataagatg ccagaatctg acttcctgat
     2461 cattcgaaca aggcagggtt actttattcg agaattagtg gatatttttg ttgttggcca
     2521 gcagtgtccc ttatttgaag ttcctggtcc taactccaaa agggccaata cacacatccg
     2581 agattttctt caggttttta tttaccggct cttttggaag agtaaagata ggccacggag
     2641 gatacggatg gaagatataa agaaagcctt tccttcacat tcagaaagca gcatccggaa
     2701 gaggctaaag ctctgtgccg acttcaaacg tacagggatg gattcaaact ggtgggtgct
     2761 gaagtctgat tttcgtttac caacggaaga ggagatccga gctatggtat ccccagaaca
     2821 gtgctgtgct tattatagca tgatagctgc tgaacagaga ctaaaggatg ctggctatgg
     2881 agagaagtcc ttttttgctc ctgaggaaga aaatgaagaa gatttccaga tgaagattga
     2941 tgatgaagtt cgtactgctc cttggaatac tacaagggct ttcattgctg ccatgaaggg
     3001 caaatgtctc ctggaggtga ctggagtagc agatcctaca ggctgtggtg aagggttctc
     3061 ctatgtgaag attccaaaca aaccgacaca acagaaggat gataaagagc ctcagccagt
     3121 gaaaaagaca gtcacaggaa cagatgcaga ccttcgtcgc ctgtctctga aaaatgccaa
     3181 gcagcttctt cgtaaatttg gtgtgcctga ggaggagatt aaaaagttgt cccgctggga
     3241 agttattgat gtggtacgta caatgtcaac agaacaggct cgctctggag aggggcccat
     3301 gagtaaattt gctcgtggat caaggttttc agtggctgag catcaagaac gttacaaaga
     3361 ggaatgtcag cgcatctttg acctacagaa caaggttttg tcatcaacag aggtcttatc
     3421 aactgacaca gacagcagct cagctgaaga cagtgacttt gaagaaatgg gaaagaatat
     3481 tgagaatatg ctgcagaaca agaaaacaag ttctcagctg tctcgggagc gggaggagca
     3541 ggaacggaag gaactccagc ggatgctact ggcagcaggc tcagcagcag caggaaacaa
     3601 tcacagagat gatgacacag cttcagtgac cagccttaac tcttctgcca ctggccgctg
     3661 tctcaagatt tatcgaacat ttcgagatga ggaggggaag gaatatgttc gttgtgagac
     3721 agtccgaaaa gcaactgtta ttgatgctta tgtacgcata cggaccacaa aagatgaaga
     3781 gttcattcga aaatttgccc tttttgatga gcaacaccga gaagagatga gaaaagaacg
     3841 gcggaggatt caagagcaat tgaggagact taaacggaac caggaaaagg aaaagctaaa
     3901 ggggcctcct gagaaaaagc ccaaaaaaat gaaggaacgg cctgacttaa aattgaaatg
     3961 tggagcatgt ggtgccatcg ggcacatgag gacaaataaa ttctgccccc tttattatca
     4021 aacaaatgct ccaccttcta accctgttgc tatgaccgag gaacaagagg aagagctgga
     4081 aaagacagtc attcataatg ataatgaaga acttatcaag gttgaaggga ccaagatcgt
     4141 tttgggcaaa cagctaattg agagtgcaga tgaagttcgc agaaaatctc tggtcctgaa
     4201 gttccctaaa caacaacttc cccccaagaa aaaacgacgg gttggaacca ctgttcactg
     4261 tgactatttg aatagacctc ataaatccat ccaccggcgc cggacagacc cgatggtgac
     4321 actgtcttct atcttggagt ctattatcaa tgacatgaga gatcttccaa atacataccc
     4381 tttccatact ccagttaatg caaaggttgt aaaggattac tataaaatca tcactcgacc
     4441 aatggatcta cagacactcc gtgaaaacgt gcgcaaacgc ctttatccgt ctcgggaaga
     4501 attcagagaa catttggagc taattgtgaa aaacagtgca acttataatg gaccaaagca
     4561 ctcactgact cagatttctc aatccatgct ggatctctgc gatgaaaaac tcaaagagaa
     4621 agaggataag ttggcacgtt tagagaaagc tatcaacccc ttgcttgacg atgatgatca
     4681 agtagccttt tcttttattc tggataacat tgtcactcag aaaatgatgg cagttccaga
     4741 ttcttggcca tttcatcacc cagttaataa gaaatttgtt ccagattatt acaaagtgat
     4801 tgtcagtcca atggatttgg agactatacg taagaatatc tccaagcaca aataccagag
     4861 tcgagagagc tttctagacg acgtaaacct gattctggcc aacagtgtta agtacaatgg
     4921 gcctgagagt cagtatacta agactgctca ggagattgtg aacgtttgtc accagacatt
     4981 aactgagtat gatgaacatt tgactcaact tgagaaagat atttgtacag ctaaagaagc
     5041 agctctggag gaagcagaat tagaaagtct ggacccaatg actccagggc catatacacc
     5101 tcaggctaag cctcctgatt tgtatgataa caacacatcc ctcagtgttt ctcgagatgc
     5161 ttctgtatat caagatgaga gcaatctgtc tgtcttggat attcccagtg ctacttcaga
     5221 aaagcagcta acacaggaag gtggagatgg agatggtgat cttgcagatg aagaggaagg
     5281 aactgtacaa cagccccaag ccagtgtctt gtatgaggat ttgcttatgt ctgaaggcga
     5341 agatgatgag gaagatgctg ggagtgacga agaaggagat aaccctttct ttgctattca
     5401 gctaagtgaa agtggaagtg actctgatgt ggaatctggc agtttaagac ccaaacagcc
     5461 ccgtgtgctt caagagaata caaggatggg catggaaaat gaagaaagca tgatgtccta
     5521 tgagggagat ggtggggacg cttcccgtgg tttggaggat agcaacatca gttatgggag
     5581 ctatgaggag cctgatccca agtccaacac ccaggatacc agcttcagca gcatcggtgg
     5641 gtatgaggta tcagaggagg aagaagatga ggaagagcag cgctctgggc ccagcgtact
     5701 aagccaggtc cacctctcag aggacgagga ggacagtgag gatttccact ccattgccgg
     5761 agacactgat ttggactctg atgaatgagg cttcctttaa gtcttttcag tcagcctagg
     5821 tctattacct ttccccccag cttgtttctg tgtacatagt agctgataat gatatcacta
     5881 gattaacacc ttagttttag tagtaagtaa aatagtaatt atttctctag attgtagagt
     5941 agcaagttct tttccctaac cactaccaaa aggagagagc agactcactc ttcctcatta
     6001 cactccttta atggcattta ttgctcttgt tgtataaaca tgccaccatt ttactttcta
     6061 attggcagac tggaacaaag gaaaacccct ctgctggatt agagaattag gtcctgatga
     6121 gctggctctg tgccacactt aaaatataat cctgttagac aaactggttg ttcatatatt
     6181 acttacttgg atagacaatg ccttgttgct aaatagatta cagggatgta gctataaatc
     6241 tctgaatgat aggtggtcat gtaaatgtcc tcttccccca ccctggaaaa aattatagga
     6301 aaatggttag taccttaggg caaagactgc cttttggttt tttttatact taggatatgg
     6361 ttttatgcaa agtaactact cagtagatgt tcttaaaaat cacagaatcc caacagataa
     6421 tgttactgtg tgcctgattc atgtagagca ctctatcaga cctttgcagt gcaaaggtta
     6481 aataagagct tgccatcaag ttggggcagt gagactggaa ttcaaacaat gttaattaat
     6541 cagagaactc taagtacaat taagaagcta gctgtaaggt acaaaggaaa aaaattagaa
     6601 tcatgtgtgg aaaagcagag ttttctagag gctacctgaa tgctgattgt tgagaagtta
     6661 tagagtacca tctcagcagg gtgttaacat gaagggaaag ttcacagtct agatgtgaca
     6721 gaatgtgttc cttgtttgta cctgccttgt ttcagaaaaa ggatgctgga gtgactagac
     6781 atgacactga aagacggaca ggaagcatat cttcaagagc tttgcatttg agctaggcat
     6841 ggtggcacat gcctttaatc ccagcacttg agagacagag gcaggcagat ttctgagttc
     6901 gaggccagcc tggtctacag agtgagttcc aggacagccg gggctacaca gagaaaccct
     6961 gtctcaaaaa acaaaacaga aaaacaaaga aattttcaga atgttgaatg aagatagaaa
     7021 ttgagtcaag taataaacat gtatgattca gtttgtctag aagtcaaaaa ttgggtatat
     7081 atgatatgct tgtatatact tgtatgtgca aaggaaaaga tatgaaagaa tgtacattaa
     7141 agtgttagca gtgatagcct ctgagggatg ggaatggaga ggaggtggtt tgtttggttt
     7201 atgtacagta ggtaagtgtt atgcttttat ttctgtatct tagttttata atgtgtatta
     7261 ttttttgtaa taaaatgtta atttaacagc aa
//
