LOCUS       XM_036160913            4906 bp    mRNA    linear   ROD 07-FEB-2024
DEFINITION  PREDICTED: Mus musculus synaptopodin (Synpo), transcript variant
            X10, mRNA.
ACCESSION   XM_036160913
VERSION     XM_036160913.1
DBLINK      BioProject: PRJNA169
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000084.7) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001635.27-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/01/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4906
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6J"
                     /db_xref="taxon:10090"
                     /chromosome="18"
     gene            1..4906
                     /gene="Synpo"
                     /gene_synonym="9030217H17Rik; 9130229N11; 9330140I15Rik"
                     /note="synaptopodin; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 2 mRNAs, 41 ESTs, 66 long
                     SRA reads, 4 Proteins, and 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 11 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:104027"
                     /db_xref="MGI:MGI:1099446"
     CDS             356..3061
                     /gene="Synpo"
                     /gene_synonym="9030217H17Rik; 9130229N11; 9330140I15Rik"
                     /codon_start=1
                     /product="synaptopodin isoform X4"
                     /protein_id="XP_036016806.1"
                     /db_xref="GeneID:104027"
                     /db_xref="MGI:MGI:1099446"
                     /translation="MEGYSEEASLLRHLEKVASEEEEVPLVVYLKENAALLTANGLHL
                     SQSRETQQSSPNPPDTEVPSPAADINQNPSSPNATLTTLASSSHHSQPTADINQNPPA
                     AITPVPQNSSQAQCSPNGTLDSKPGTLCADDGQSPVPAEEVRSSILLIDKVSAPPSAA
                     STFSREATPLSSSGPPAADLMSSSLLIDMQPSTLVAPAEQEVPGHVAVTTPTKVYSEV
                     HLTLAKPASVVNRTARPFGIQSPGTSQIEQSPMMGRRQFGEKAWAPPASSMADRSPQP
                     QRHIMSRSPMVERRLLGQRSPVLERRPLGNFTPPPTYAETLSTAPVASRVRSPPSYST
                     LYPSSDPKPSHLKGQVAPANKTGILEESMARRGSRKSMFTFVEKPKVTPNPDLLDLVQ
                     TADEKRRQRDHGEVGMEEEPFALGAEASNFQQEPIARDRASPAAAEEAVPEWASCLKS
                     PRIQAKPKPKPNQNLSEASGKGAELYARRQSRMEKYVIESSGHAELARCPSPTMSLPS
                     SWKYTTNAPGGFRVASLSPARTPPASLYHGYLPENGVLRPEPTKQQPYQMRPSLYALS
                     PVKEPAKASSRATSSRTPSRTVSPRAASPAKPSSLDLVPNLPRAGLPPSPALPRPSRS
                     SPGLYTAPVQDSLQPTAVSPTYSSDISPVSPSRAWSPRAKQAPRPSFSTRNAGIEAQD
                     RPESLPTSPPWTPAASRPPSSLDGWVSPGPWEPGRGSSMSSPPPLPPPPPMSPSWSER
                     SVSPLRSETEARPPSRQLQALLARNIINAARRKSASPRPAPAETLRPFSPPQGPPPPP
                     ARMRSPQPASPARNFRGAAFSPIPRSPLPIGPSSCASPRSPQAAPSRPFPYRRSPTDS
                     DVSLDSEDSGLKSPGILGYNICPRGWNGSLRLKRGSLPTEASCTT"
ORIGIN      
        1 tggctgactg ggacggagag cactgggccg gagcacaagc ttcaccgaaa acgacctgaa
       61 ggaggccaag gcgaggagcc agcagattgc agcccagctg accacccctc ccagctccaa
      121 ttcccgaggg gtccagctct tcaacaggcg caggcagagg gtgaacgagt tcaccttgga
      181 gagccgaggc cagaggtcac caaagctcaa ccaagaggcc ctccaaacag ggcgtccttt
      241 gagccccata ggccatgccc cggggcctag tgtgaagccc acatctccat caaagccagg
      301 ctctccaaag caccccagtc cccaaagccc cagccgaggg gtcgctggcc acatcatgga
      361 ggggtactca gaggaagcca gtctgctgcg gcatctggag aaggttgcca gtgaggaaga
      421 ggaagtgcca ttggtagttt atttaaagga gaatgcagcc ctgctgacag ccaatgggct
      481 acacctgtcg cagagccgag agacccagca gtcctcacca aaccctcccg acactgaagt
      541 acccagtcca gctgcagata tcaaccagaa cccgtcctca cctaatgcca cactcaccac
      601 actagcctct agcagtcacc acagtcagcc caccgctgat atcaaccaaa accctccagc
      661 cgccatcacc cctgtcccac agaattcatc ccaggcacag tgctccccga atggcacact
      721 tgattccaaa cccggcactc tgtgtgctga tgatgggcag tccccggtgc cggcagagga
      781 ggtgagatcc agcattctct tgattgacaa ggtgtcagct ccaccttctg ccgccagcac
      841 cttctctaga gaagccacgc ccctctccag ctctgggccg ccagcggcag atctcatgtc
      901 cagctccctg ctcattgaca tgcagcctag caccctagtg gcaccagcag aacaagaggt
      961 gcctggccat gtagctgtca ccacgcccac taaggtgtat agtgaagtac atctcacact
     1021 agccaagcct gcatccgtgg tcaacaggac cgccaggcct tttgggatcc agtcgccagg
     1081 gaccagccag atagagcaaa gccccatgat gggaagacga cagtttggag agaaggcctg
     1141 ggctcctcct gctagcagta tggcggatag gagtccccag ccacagaggc acataatgtc
     1201 ccgcagtccc atggtggaaa ggagactgct tgggcagcga agcccggtcc tagagagacg
     1261 ccccttagga aatttcaccc caccccccac ctatgcggag actttgtcaa cagcccctgt
     1321 ggcttctcgg gttaggtctc ccccctctta ctccactctg tatcccagct ctgaccccaa
     1381 gccttcccat ttgaaaggtc aggtagcccc tgccaacaag acaggaattt tggaagaatc
     1441 tatggcacgc cgaggcagcc ggaaatcaat gttcactttc gtggagaagc ccaaggtgac
     1501 cccgaatcca gatttgctgg acctagtgca gacagctgat gagaagcgga ggcagagaga
     1561 ccacggggag gtgggcatgg aagaagagcc ctttgccctg ggagctgagg cctccaactt
     1621 ccagcaggag ccaatagctc gggacagggc cagccctgcg gcagctgagg aagctgtccc
     1681 tgagtgggcc tcttgcctca agtcaccccg tatccaggcc aagccgaagc ccaaacccaa
     1741 tcagaacctc tcggaagcct cagggaaggg ggctgagctc tatgcccgcc gccagtcacg
     1801 gatggagaaa tacgtcatag agtcttcagg ccatgccgaa ttggcccgct gcccttcacc
     1861 taccatgtcc ctgccttcat cctggaagta caccactaac gcccctgggg gcttccgagt
     1921 ggcatcctta agtccagcgc ggaccccgcc tgcctctctc taccacggct atctgccaga
     1981 gaatggagtc ctgcgccctg aacctaccaa gcagcagcca taccagatgc ggccttccct
     2041 ctatgctctg tcgcccgtca aggaacctgc caaggcctca tcgcgtgcca cctcatcgcg
     2101 cactccatca cgcactgtct cacctcgagc tgcctccccg gccaagccta gctctctgga
     2161 cctggtgccc aacctgccca gagcaggcct cccaccatct cctgctctgc ctcggccttc
     2221 ccgctcctcc ccaggcctct acactgcccc agtccaagac agcctccagc ccactgccgt
     2281 gagtcccact tacagcagtg atatctcccc cgtgtctccc tccagggcgt ggtctcctcg
     2341 agccaagcag gctcccaggc cttccttctc cacccggaat gctgggatcg aggcccagga
     2401 ccgcccggag agcctgccca cgtccccgcc ctggacgccg gccgcttccc ggcctcctag
     2461 cagcctggac ggctgggtga gcccggggcc gtgggagccg ggccgcggga gcagcatgag
     2521 cagccctccg ccgctgccgc cgcctccacc aatgtccccc tcgtggagcg agcgctccgt
     2581 ctccccgctg cgatcggaga ccgaggcgcg gcccccgagc cgccagctgc aggcgcttct
     2641 ggcgcgcaac atcatcaacg cggcccggcg caagagcgcc tccccgcggc cagcgccggc
     2701 tgagaccctg cggccctttt ccccgccgca ggggccgccg ccgccgccgg cgcgcatgcg
     2761 ctctccgcag ccagccagcc ctgcccgtaa cttccgtgga gctgctttct ctcccatccc
     2821 gcggagcccg ttgcccatcg gaccttcttc ctgtgctagt ccccggagtc ctcaagccgc
     2881 gccgtccagg ccttttccct accgccgctc acccacagac tccgacgtgt ctctcgactc
     2941 cgaggattct gggcttaagt cgcctggcat cctcggctac aacatctgtc ctcggggctg
     3001 gaatggcagc ctgaggctca agcgtggtag tctccccacc gaggcctcct gcaccaccta
     3061 aagtttcatc tctgccccgg gagggtcgag ccggaagagg cactaagctt gggggaaccc
     3121 cagcaccgag atccgaaggg tctgacctca ttggacagct ctagagaaaa aaggggtcag
     3181 ggaaggagag ctctgggctt ggggggcctg tccatcaaac ttgggttgta gcccttggtt
     3241 ttgccattta tttgtatggc tctgaggaag agcctcttgt ctttgaccct tagctttggc
     3301 caatgcagtc tccagacatc ttccctttcc ttccattcac gtgtgcctta ggggaggcag
     3361 ctaagcacac agccatcgac cttcatcatt gccaggcttc catgcttctt cctccaacac
     3421 tgctttctac agcctggcaa atgaagtatg tgttgaaaag aaccttggcc atgacctggg
     3481 cccgggccct ggcttgaccg tcgctcctgg catcaagtcc caggcgggag cagctgtttt
     3541 ccatctcttc gcagactagc tctattttta tctggtgacc tttaaagaga tctcccaggc
     3601 aagctcaagg tgccctgctg ggcccctctg gggagaaggg gctggaagat tctctccagg
     3661 cactgccatg ctgctttctc tatccccccc agctcagggt gtctagacta tccctatggc
     3721 cagggcagag cagagagtaa agttccctgg ggctatgggt ctcaggagcc ccagactcct
     3781 gtttttctgg gcttattgat ggctagtttt aggtttttca aaaccgggga gagacgagaa
     3841 ggcagtctag ggtgtgttac ctatttggaa aggggttctt gttgcagaat atgcaaacca
     3901 tggccaggat acgtagacaa gacttaagta ttgggtggag ctgactcttg acctctgagg
     3961 attcttgaaa ttcactccat agtatcagaa atcgaggggt taagggggag cttcacaggg
     4021 ctcgaattcc gatgcaaata aacctgggtg ggaagtcaag tatgccagta tgggcttgcc
     4081 atagtgtcta tagtatgccc agaagggtgg gcattgttat attcattttc ttcacatctc
     4141 actgtggcct ggatcatgcc tatacccagt ggccttaagg tgcctctccc cttaatctca
     4201 gtgactctga ttccagtccc caagagtgac tgggggaaga agagctgagt tttgtgtgtt
     4261 tcatagtcaa caggtgatat cccttgaagg ttcagagtat catcttcaga attcagagcc
     4321 tggggctggg ggtgctggag ttagatgagg cacaaatata tgacggtggg ggaaaatact
     4381 aggatgttgt taaaggtaag ggatgatgcg attttggagt gattagtaga tttgcccaca
     4441 tatcagggtt atctagagct cctgagtaag gttaggggaa gctagggtca ggatggaata
     4501 aagtcagggt tggaatggag tgcatcggaa tagaggggtg atcttggtag gttcctattg
     4561 cccatgggtt tgagaaccag gccctgggaa gatgagagag tactcagctc ctacctggtg
     4621 cagcatccct tgtagttaca gagtcccaag ctagggaagc ctcccagaga agagacccta
     4681 ctagaattct agctcatgct ttggcataca tagatcagct tctacctgca attcctggga
     4741 taaccaggag ggggcagctt tgagaagcta cagttctgtt cccgcagttg tcatagtgac
     4801 tgccttctca cttagctggt ctctaaaacc caccacagct tgcctgtatc ctgccttgtg
     4861 cctcttgtag aattcagagc aataaatgcg ttctgcattc ttgtgc
//
