LOCUS       XM_036160910            5044 bp    mRNA    linear   ROD 07-FEB-2024
DEFINITION  PREDICTED: Mus musculus synaptopodin (Synpo), transcript variant
            X8, mRNA.
ACCESSION   XM_036160910
VERSION     XM_036160910.1
DBLINK      BioProject: PRJNA169
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000084.7) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001635.27-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/01/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5044
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6J"
                     /db_xref="taxon:10090"
                     /chromosome="18"
     gene            1..5044
                     /gene="Synpo"
                     /gene_synonym="9030217H17Rik; 9130229N11; 9330140I15Rik"
                     /note="synaptopodin; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 3 mRNAs, 43 ESTs, 66 long
                     SRA reads, 4 Proteins, and 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 17 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:104027"
                     /db_xref="MGI:MGI:1099446"
     CDS             494..3199
                     /gene="Synpo"
                     /gene_synonym="9030217H17Rik; 9130229N11; 9330140I15Rik"
                     /codon_start=1
                     /product="synaptopodin isoform X4"
                     /protein_id="XP_036016803.1"
                     /db_xref="GeneID:104027"
                     /db_xref="MGI:MGI:1099446"
                     /translation="MEGYSEEASLLRHLEKVASEEEEVPLVVYLKENAALLTANGLHL
                     SQSRETQQSSPNPPDTEVPSPAADINQNPSSPNATLTTLASSSHHSQPTADINQNPPA
                     AITPVPQNSSQAQCSPNGTLDSKPGTLCADDGQSPVPAEEVRSSILLIDKVSAPPSAA
                     STFSREATPLSSSGPPAADLMSSSLLIDMQPSTLVAPAEQEVPGHVAVTTPTKVYSEV
                     HLTLAKPASVVNRTARPFGIQSPGTSQIEQSPMMGRRQFGEKAWAPPASSMADRSPQP
                     QRHIMSRSPMVERRLLGQRSPVLERRPLGNFTPPPTYAETLSTAPVASRVRSPPSYST
                     LYPSSDPKPSHLKGQVAPANKTGILEESMARRGSRKSMFTFVEKPKVTPNPDLLDLVQ
                     TADEKRRQRDHGEVGMEEEPFALGAEASNFQQEPIARDRASPAAAEEAVPEWASCLKS
                     PRIQAKPKPKPNQNLSEASGKGAELYARRQSRMEKYVIESSGHAELARCPSPTMSLPS
                     SWKYTTNAPGGFRVASLSPARTPPASLYHGYLPENGVLRPEPTKQQPYQMRPSLYALS
                     PVKEPAKASSRATSSRTPSRTVSPRAASPAKPSSLDLVPNLPRAGLPPSPALPRPSRS
                     SPGLYTAPVQDSLQPTAVSPTYSSDISPVSPSRAWSPRAKQAPRPSFSTRNAGIEAQD
                     RPESLPTSPPWTPAASRPPSSLDGWVSPGPWEPGRGSSMSSPPPLPPPPPMSPSWSER
                     SVSPLRSETEARPPSRQLQALLARNIINAARRKSASPRPAPAETLRPFSPPQGPPPPP
                     ARMRSPQPASPARNFRGAAFSPIPRSPLPIGPSSCASPRSPQAAPSRPFPYRRSPTDS
                     DVSLDSEDSGLKSPGILGYNICPRGWNGSLRLKRGSLPTEASCTT"
ORIGIN      
        1 caggcccgga aagtgatgac agccagtggc agcagcagcc ctgtgcccag ggtggcccag
       61 aaaccaggag cttggctgcc tgtcccagag gctttgggga agaggccgat tgacagagca
      121 tcctggggaa gctgggctgc agggaggacc cagtcagaca ctgggccgga gcacaagctt
      181 caccgaaaac gacctgaagg aggccaaggc gaggagccag cagattgcag cccagctgac
      241 cacccctccc agctccaatt cccgaggggt ccagctcttc aacaggcgca ggcagagggt
      301 gaacgagttc accttggaga gccgaggcca gaggtcacca aagctcaacc aagaggccct
      361 ccaaacaggg cgtcctttga gccccatagg ccatgccccg gggcctagtg tgaagcccac
      421 atctccatca aagccaggct ctccaaagca ccccagtccc caaagcccca gccgaggggt
      481 cgctggccac atcatggagg ggtactcaga ggaagccagt ctgctgcggc atctggagaa
      541 ggttgccagt gaggaagagg aagtgccatt ggtagtttat ttaaaggaga atgcagccct
      601 gctgacagcc aatgggctac acctgtcgca gagccgagag acccagcagt cctcaccaaa
      661 ccctcccgac actgaagtac ccagtccagc tgcagatatc aaccagaacc cgtcctcacc
      721 taatgccaca ctcaccacac tagcctctag cagtcaccac agtcagccca ccgctgatat
      781 caaccaaaac cctccagccg ccatcacccc tgtcccacag aattcatccc aggcacagtg
      841 ctccccgaat ggcacacttg attccaaacc cggcactctg tgtgctgatg atgggcagtc
      901 cccggtgccg gcagaggagg tgagatccag cattctcttg attgacaagg tgtcagctcc
      961 accttctgcc gccagcacct tctctagaga agccacgccc ctctccagct ctgggccgcc
     1021 agcggcagat ctcatgtcca gctccctgct cattgacatg cagcctagca ccctagtggc
     1081 accagcagaa caagaggtgc ctggccatgt agctgtcacc acgcccacta aggtgtatag
     1141 tgaagtacat ctcacactag ccaagcctgc atccgtggtc aacaggaccg ccaggccttt
     1201 tgggatccag tcgccaggga ccagccagat agagcaaagc cccatgatgg gaagacgaca
     1261 gtttggagag aaggcctggg ctcctcctgc tagcagtatg gcggatagga gtccccagcc
     1321 acagaggcac ataatgtccc gcagtcccat ggtggaaagg agactgcttg ggcagcgaag
     1381 cccggtccta gagagacgcc ccttaggaaa tttcacccca ccccccacct atgcggagac
     1441 tttgtcaaca gcccctgtgg cttctcgggt taggtctccc ccctcttact ccactctgta
     1501 tcccagctct gaccccaagc cttcccattt gaaaggtcag gtagcccctg ccaacaagac
     1561 aggaattttg gaagaatcta tggcacgccg aggcagccgg aaatcaatgt tcactttcgt
     1621 ggagaagccc aaggtgaccc cgaatccaga tttgctggac ctagtgcaga cagctgatga
     1681 gaagcggagg cagagagacc acggggaggt gggcatggaa gaagagccct ttgccctggg
     1741 agctgaggcc tccaacttcc agcaggagcc aatagctcgg gacagggcca gccctgcggc
     1801 agctgaggaa gctgtccctg agtgggcctc ttgcctcaag tcaccccgta tccaggccaa
     1861 gccgaagccc aaacccaatc agaacctctc ggaagcctca gggaaggggg ctgagctcta
     1921 tgcccgccgc cagtcacgga tggagaaata cgtcatagag tcttcaggcc atgccgaatt
     1981 ggcccgctgc ccttcaccta ccatgtccct gccttcatcc tggaagtaca ccactaacgc
     2041 ccctgggggc ttccgagtgg catccttaag tccagcgcgg accccgcctg cctctctcta
     2101 ccacggctat ctgccagaga atggagtcct gcgccctgaa cctaccaagc agcagccata
     2161 ccagatgcgg ccttccctct atgctctgtc gcccgtcaag gaacctgcca aggcctcatc
     2221 gcgtgccacc tcatcgcgca ctccatcacg cactgtctca cctcgagctg cctccccggc
     2281 caagcctagc tctctggacc tggtgcccaa cctgcccaga gcaggcctcc caccatctcc
     2341 tgctctgcct cggccttccc gctcctcccc aggcctctac actgccccag tccaagacag
     2401 cctccagccc actgccgtga gtcccactta cagcagtgat atctcccccg tgtctccctc
     2461 cagggcgtgg tctcctcgag ccaagcaggc tcccaggcct tccttctcca cccggaatgc
     2521 tgggatcgag gcccaggacc gcccggagag cctgcccacg tccccgccct ggacgccggc
     2581 cgcttcccgg cctcctagca gcctggacgg ctgggtgagc ccggggccgt gggagccggg
     2641 ccgcgggagc agcatgagca gccctccgcc gctgccgccg cctccaccaa tgtccccctc
     2701 gtggagcgag cgctccgtct ccccgctgcg atcggagacc gaggcgcggc ccccgagccg
     2761 ccagctgcag gcgcttctgg cgcgcaacat catcaacgcg gcccggcgca agagcgcctc
     2821 cccgcggcca gcgccggctg agaccctgcg gcccttttcc ccgccgcagg ggccgccgcc
     2881 gccgccggcg cgcatgcgct ctccgcagcc agccagccct gcccgtaact tccgtggagc
     2941 tgctttctct cccatcccgc ggagcccgtt gcccatcgga ccttcttcct gtgctagtcc
     3001 ccggagtcct caagccgcgc cgtccaggcc ttttccctac cgccgctcac ccacagactc
     3061 cgacgtgtct ctcgactccg aggattctgg gcttaagtcg cctggcatcc tcggctacaa
     3121 catctgtcct cggggctgga atggcagcct gaggctcaag cgtggtagtc tccccaccga
     3181 ggcctcctgc accacctaaa gtttcatctc tgccccggga gggtcgagcc ggaagaggca
     3241 ctaagcttgg gggaacccca gcaccgagat ccgaagggtc tgacctcatt ggacagctct
     3301 agagaaaaaa ggggtcaggg aaggagagct ctgggcttgg ggggcctgtc catcaaactt
     3361 gggttgtagc ccttggtttt gccatttatt tgtatggctc tgaggaagag cctcttgtct
     3421 ttgaccctta gctttggcca atgcagtctc cagacatctt ccctttcctt ccattcacgt
     3481 gtgccttagg ggaggcagct aagcacacag ccatcgacct tcatcattgc caggcttcca
     3541 tgcttcttcc tccaacactg ctttctacag cctggcaaat gaagtatgtg ttgaaaagaa
     3601 ccttggccat gacctgggcc cgggccctgg cttgaccgtc gctcctggca tcaagtccca
     3661 ggcgggagca gctgttttcc atctcttcgc agactagctc tatttttatc tggtgacctt
     3721 taaagagatc tcccaggcaa gctcaaggtg ccctgctggg cccctctggg gagaaggggc
     3781 tggaagattc tctccaggca ctgccatgct gctttctcta tcccccccag ctcagggtgt
     3841 ctagactatc cctatggcca gggcagagca gagagtaaag ttccctgggg ctatgggtct
     3901 caggagcccc agactcctgt ttttctgggc ttattgatgg ctagttttag gtttttcaaa
     3961 accggggaga gacgagaagg cagtctaggg tgtgttacct atttggaaag gggttcttgt
     4021 tgcagaatat gcaaaccatg gccaggatac gtagacaaga cttaagtatt gggtggagct
     4081 gactcttgac ctctgaggat tcttgaaatt cactccatag tatcagaaat cgaggggtta
     4141 agggggagct tcacagggct cgaattccga tgcaaataaa cctgggtggg aagtcaagta
     4201 tgccagtatg ggcttgccat agtgtctata gtatgcccag aagggtgggc attgttatat
     4261 tcattttctt cacatctcac tgtggcctgg atcatgccta tacccagtgg ccttaaggtg
     4321 cctctcccct taatctcagt gactctgatt ccagtcccca agagtgactg ggggaagaag
     4381 agctgagttt tgtgtgtttc atagtcaaca ggtgatatcc cttgaaggtt cagagtatca
     4441 tcttcagaat tcagagcctg gggctggggg tgctggagtt agatgaggca caaatatatg
     4501 acggtggggg aaaatactag gatgttgtta aaggtaaggg atgatgcgat tttggagtga
     4561 ttagtagatt tgcccacata tcagggttat ctagagctcc tgagtaaggt taggggaagc
     4621 tagggtcagg atggaataaa gtcagggttg gaatggagtg catcggaata gaggggtgat
     4681 cttggtaggt tcctattgcc catgggtttg agaaccaggc cctgggaaga tgagagagta
     4741 ctcagctcct acctggtgca gcatcccttg tagttacaga gtcccaagct agggaagcct
     4801 cccagagaag agaccctact agaattctag ctcatgcttt ggcatacata gatcagcttc
     4861 tacctgcaat tcctgggata accaggaggg ggcagctttg agaagctaca gttctgttcc
     4921 cgcagttgtc atagtgactg ccttctcact tagctggtct ctaaaaccca ccacagcttg
     4981 cctgtatcct gccttgtgcc tcttgtagaa ttcagagcaa taaatgcgtt ctgcattctt
     5041 gtgc
//
