LOCUS       XM_006525475            5154 bp    mRNA    linear   ROD 07-FEB-2024
DEFINITION  PREDICTED: Mus musculus synaptopodin (Synpo), transcript variant
            X6, mRNA.
ACCESSION   XM_006525475
VERSION     XM_006525475.4
DBLINK      BioProject: PRJNA169
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000084.7) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Sep 21, 2020 this sequence version replaced XM_006525475.3.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001635.27-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/01/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5154
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6J"
                     /db_xref="taxon:10090"
                     /chromosome="18"
     gene            1..5154
                     /gene="Synpo"
                     /gene_synonym="9030217H17Rik; 9130229N11; 9330140I15Rik"
                     /note="synaptopodin; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 4 mRNAs, 44 ESTs, 68 long
                     SRA reads, 4 Proteins, and 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 24 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:104027"
                     /db_xref="MGI:MGI:1099446"
     CDS             604..3309
                     /gene="Synpo"
                     /gene_synonym="9030217H17Rik; 9130229N11; 9330140I15Rik"
                     /codon_start=1
                     /product="synaptopodin isoform X4"
                     /protein_id="XP_006525538.1"
                     /db_xref="GeneID:104027"
                     /db_xref="MGI:MGI:1099446"
                     /translation="MEGYSEEASLLRHLEKVASEEEEVPLVVYLKENAALLTANGLHL
                     SQSRETQQSSPNPPDTEVPSPAADINQNPSSPNATLTTLASSSHHSQPTADINQNPPA
                     AITPVPQNSSQAQCSPNGTLDSKPGTLCADDGQSPVPAEEVRSSILLIDKVSAPPSAA
                     STFSREATPLSSSGPPAADLMSSSLLIDMQPSTLVAPAEQEVPGHVAVTTPTKVYSEV
                     HLTLAKPASVVNRTARPFGIQSPGTSQIEQSPMMGRRQFGEKAWAPPASSMADRSPQP
                     QRHIMSRSPMVERRLLGQRSPVLERRPLGNFTPPPTYAETLSTAPVASRVRSPPSYST
                     LYPSSDPKPSHLKGQVAPANKTGILEESMARRGSRKSMFTFVEKPKVTPNPDLLDLVQ
                     TADEKRRQRDHGEVGMEEEPFALGAEASNFQQEPIARDRASPAAAEEAVPEWASCLKS
                     PRIQAKPKPKPNQNLSEASGKGAELYARRQSRMEKYVIESSGHAELARCPSPTMSLPS
                     SWKYTTNAPGGFRVASLSPARTPPASLYHGYLPENGVLRPEPTKQQPYQMRPSLYALS
                     PVKEPAKASSRATSSRTPSRTVSPRAASPAKPSSLDLVPNLPRAGLPPSPALPRPSRS
                     SPGLYTAPVQDSLQPTAVSPTYSSDISPVSPSRAWSPRAKQAPRPSFSTRNAGIEAQD
                     RPESLPTSPPWTPAASRPPSSLDGWVSPGPWEPGRGSSMSSPPPLPPPPPMSPSWSER
                     SVSPLRSETEARPPSRQLQALLARNIINAARRKSASPRPAPAETLRPFSPPQGPPPPP
                     ARMRSPQPASPARNFRGAAFSPIPRSPLPIGPSSCASPRSPQAAPSRPFPYRRSPTDS
                     DVSLDSEDSGLKSPGILGYNICPRGWNGSLRLKRGSLPTEASCTT"
ORIGIN      
        1 ggctcccgct tgggtcccct tcagcctcta gcggctagga ccttgcttag ggcgctgagt
       61 gggcgccgcc gctgggcggg gtgcagggat ctcggggcgg ggctcacgca cggacgtagc
      121 caggtgagcc aaggcggcgg cgcccgggag ctcggggacc gcgcacggct gctggaggag
      181 cttggctgcc tgtcccagag gctttgggga agaggccgat tgacagagca tcctggggaa
      241 gctgggctgc agggaggacc cagtcagaca ctgggccgga gcacaagctt caccgaaaac
      301 gacctgaagg aggccaaggc gaggagccag cagattgcag cccagctgac cacccctccc
      361 agctccaatt cccgaggggt ccagctcttc aacaggcgca ggcagagggt gaacgagttc
      421 accttggaga gccgaggcca gaggtcacca aagctcaacc aagaggccct ccaaacaggg
      481 cgtcctttga gccccatagg ccatgccccg gggcctagtg tgaagcccac atctccatca
      541 aagccaggct ctccaaagca ccccagtccc caaagcccca gccgaggggt cgctggccac
      601 atcatggagg ggtactcaga ggaagccagt ctgctgcggc atctggagaa ggttgccagt
      661 gaggaagagg aagtgccatt ggtagtttat ttaaaggaga atgcagccct gctgacagcc
      721 aatgggctac acctgtcgca gagccgagag acccagcagt cctcaccaaa ccctcccgac
      781 actgaagtac ccagtccagc tgcagatatc aaccagaacc cgtcctcacc taatgccaca
      841 ctcaccacac tagcctctag cagtcaccac agtcagccca ccgctgatat caaccaaaac
      901 cctccagccg ccatcacccc tgtcccacag aattcatccc aggcacagtg ctccccgaat
      961 ggcacacttg attccaaacc cggcactctg tgtgctgatg atgggcagtc cccggtgccg
     1021 gcagaggagg tgagatccag cattctcttg attgacaagg tgtcagctcc accttctgcc
     1081 gccagcacct tctctagaga agccacgccc ctctccagct ctgggccgcc agcggcagat
     1141 ctcatgtcca gctccctgct cattgacatg cagcctagca ccctagtggc accagcagaa
     1201 caagaggtgc ctggccatgt agctgtcacc acgcccacta aggtgtatag tgaagtacat
     1261 ctcacactag ccaagcctgc atccgtggtc aacaggaccg ccaggccttt tgggatccag
     1321 tcgccaggga ccagccagat agagcaaagc cccatgatgg gaagacgaca gtttggagag
     1381 aaggcctggg ctcctcctgc tagcagtatg gcggatagga gtccccagcc acagaggcac
     1441 ataatgtccc gcagtcccat ggtggaaagg agactgcttg ggcagcgaag cccggtccta
     1501 gagagacgcc ccttaggaaa tttcacccca ccccccacct atgcggagac tttgtcaaca
     1561 gcccctgtgg cttctcgggt taggtctccc ccctcttact ccactctgta tcccagctct
     1621 gaccccaagc cttcccattt gaaaggtcag gtagcccctg ccaacaagac aggaattttg
     1681 gaagaatcta tggcacgccg aggcagccgg aaatcaatgt tcactttcgt ggagaagccc
     1741 aaggtgaccc cgaatccaga tttgctggac ctagtgcaga cagctgatga gaagcggagg
     1801 cagagagacc acggggaggt gggcatggaa gaagagccct ttgccctggg agctgaggcc
     1861 tccaacttcc agcaggagcc aatagctcgg gacagggcca gccctgcggc agctgaggaa
     1921 gctgtccctg agtgggcctc ttgcctcaag tcaccccgta tccaggccaa gccgaagccc
     1981 aaacccaatc agaacctctc ggaagcctca gggaaggggg ctgagctcta tgcccgccgc
     2041 cagtcacgga tggagaaata cgtcatagag tcttcaggcc atgccgaatt ggcccgctgc
     2101 ccttcaccta ccatgtccct gccttcatcc tggaagtaca ccactaacgc ccctgggggc
     2161 ttccgagtgg catccttaag tccagcgcgg accccgcctg cctctctcta ccacggctat
     2221 ctgccagaga atggagtcct gcgccctgaa cctaccaagc agcagccata ccagatgcgg
     2281 ccttccctct atgctctgtc gcccgtcaag gaacctgcca aggcctcatc gcgtgccacc
     2341 tcatcgcgca ctccatcacg cactgtctca cctcgagctg cctccccggc caagcctagc
     2401 tctctggacc tggtgcccaa cctgcccaga gcaggcctcc caccatctcc tgctctgcct
     2461 cggccttccc gctcctcccc aggcctctac actgccccag tccaagacag cctccagccc
     2521 actgccgtga gtcccactta cagcagtgat atctcccccg tgtctccctc cagggcgtgg
     2581 tctcctcgag ccaagcaggc tcccaggcct tccttctcca cccggaatgc tgggatcgag
     2641 gcccaggacc gcccggagag cctgcccacg tccccgccct ggacgccggc cgcttcccgg
     2701 cctcctagca gcctggacgg ctgggtgagc ccggggccgt gggagccggg ccgcgggagc
     2761 agcatgagca gccctccgcc gctgccgccg cctccaccaa tgtccccctc gtggagcgag
     2821 cgctccgtct ccccgctgcg atcggagacc gaggcgcggc ccccgagccg ccagctgcag
     2881 gcgcttctgg cgcgcaacat catcaacgcg gcccggcgca agagcgcctc cccgcggcca
     2941 gcgccggctg agaccctgcg gcccttttcc ccgccgcagg ggccgccgcc gccgccggcg
     3001 cgcatgcgct ctccgcagcc agccagccct gcccgtaact tccgtggagc tgctttctct
     3061 cccatcccgc ggagcccgtt gcccatcgga ccttcttcct gtgctagtcc ccggagtcct
     3121 caagccgcgc cgtccaggcc ttttccctac cgccgctcac ccacagactc cgacgtgtct
     3181 ctcgactccg aggattctgg gcttaagtcg cctggcatcc tcggctacaa catctgtcct
     3241 cggggctgga atggcagcct gaggctcaag cgtggtagtc tccccaccga ggcctcctgc
     3301 accacctaaa gtttcatctc tgccccggga gggtcgagcc ggaagaggca ctaagcttgg
     3361 gggaacccca gcaccgagat ccgaagggtc tgacctcatt ggacagctct agagaaaaaa
     3421 ggggtcaggg aaggagagct ctgggcttgg ggggcctgtc catcaaactt gggttgtagc
     3481 ccttggtttt gccatttatt tgtatggctc tgaggaagag cctcttgtct ttgaccctta
     3541 gctttggcca atgcagtctc cagacatctt ccctttcctt ccattcacgt gtgccttagg
     3601 ggaggcagct aagcacacag ccatcgacct tcatcattgc caggcttcca tgcttcttcc
     3661 tccaacactg ctttctacag cctggcaaat gaagtatgtg ttgaaaagaa ccttggccat
     3721 gacctgggcc cgggccctgg cttgaccgtc gctcctggca tcaagtccca ggcgggagca
     3781 gctgttttcc atctcttcgc agactagctc tatttttatc tggtgacctt taaagagatc
     3841 tcccaggcaa gctcaaggtg ccctgctggg cccctctggg gagaaggggc tggaagattc
     3901 tctccaggca ctgccatgct gctttctcta tcccccccag ctcagggtgt ctagactatc
     3961 cctatggcca gggcagagca gagagtaaag ttccctgggg ctatgggtct caggagcccc
     4021 agactcctgt ttttctgggc ttattgatgg ctagttttag gtttttcaaa accggggaga
     4081 gacgagaagg cagtctaggg tgtgttacct atttggaaag gggttcttgt tgcagaatat
     4141 gcaaaccatg gccaggatac gtagacaaga cttaagtatt gggtggagct gactcttgac
     4201 ctctgaggat tcttgaaatt cactccatag tatcagaaat cgaggggtta agggggagct
     4261 tcacagggct cgaattccga tgcaaataaa cctgggtggg aagtcaagta tgccagtatg
     4321 ggcttgccat agtgtctata gtatgcccag aagggtgggc attgttatat tcattttctt
     4381 cacatctcac tgtggcctgg atcatgccta tacccagtgg ccttaaggtg cctctcccct
     4441 taatctcagt gactctgatt ccagtcccca agagtgactg ggggaagaag agctgagttt
     4501 tgtgtgtttc atagtcaaca ggtgatatcc cttgaaggtt cagagtatca tcttcagaat
     4561 tcagagcctg gggctggggg tgctggagtt agatgaggca caaatatatg acggtggggg
     4621 aaaatactag gatgttgtta aaggtaaggg atgatgcgat tttggagtga ttagtagatt
     4681 tgcccacata tcagggttat ctagagctcc tgagtaaggt taggggaagc tagggtcagg
     4741 atggaataaa gtcagggttg gaatggagtg catcggaata gaggggtgat cttggtaggt
     4801 tcctattgcc catgggtttg agaaccaggc cctgggaaga tgagagagta ctcagctcct
     4861 acctggtgca gcatcccttg tagttacaga gtcccaagct agggaagcct cccagagaag
     4921 agaccctact agaattctag ctcatgcttt ggcatacata gatcagcttc tacctgcaat
     4981 tcctgggata accaggaggg ggcagctttg agaagctaca gttctgttcc cgcagttgtc
     5041 atagtgactg ccttctcact tagctggtct ctaaaaccca ccacagcttg cctgtatcct
     5101 gccttgtgcc tcttgtagaa ttcagagcaa taaatgcgtt ctgcattctt gtgc
//
