LOCUS       XM_006525471            5697 bp    mRNA    linear   ROD 07-FEB-2024
DEFINITION  PREDICTED: Mus musculus synaptopodin (Synpo), transcript variant
            X3, mRNA.
ACCESSION   XM_006525471
VERSION     XM_006525471.3
DBLINK      BioProject: PRJNA169
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000084.7) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Sep 21, 2020 this sequence version replaced XM_006525471.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001635.27-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/01/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5697
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6J"
                     /db_xref="taxon:10090"
                     /chromosome="18"
     gene            1..5697
                     /gene="Synpo"
                     /gene_synonym="9030217H17Rik; 9130229N11; 9330140I15Rik"
                     /note="synaptopodin; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 2 mRNAs, 43 ESTs, 66 long
                     SRA reads, 4 Proteins, and 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 3 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:104027"
                     /db_xref="MGI:MGI:1099446"
     CDS             430..3852
                     /gene="Synpo"
                     /gene_synonym="9030217H17Rik; 9130229N11; 9330140I15Rik"
                     /codon_start=1
                     /product="synaptopodin isoform X1"
                     /protein_id="XP_006525534.1"
                     /db_xref="GeneID:104027"
                     /db_xref="MGI:MGI:1099446"
                     /translation="MLGAHFPPPPLGASEGRAAPCTFQIPDGSYRCLALEAEESSSED
                     GLQGEVRLVDLEEEGTSQSRANHGTPPLSRAPAIIQPSSCHREARGGFQRSDRPSHDW
                     DVVQARKVMTASGSSSPVPRVAQKPALGRSTSFTENDLKEAKARSQQIAAQLTTPPSS
                     NSRGVQLFNRRRQRVNEFTLESRGQRSPKLNQEALQTGRPLSPIGHAPGPSVKPTSPS
                     KPGSPKHPSPQSPSRGVAGHIMEGYSEEASLLRHLEKVASEEEEVPLVVYLKENAALL
                     TANGLHLSQSRETQQSSPNPPDTEVPSPAADINQNPSSPNATLTTLASSSHHSQPTAD
                     INQNPPAAITPVPQNSSQAQCSPNGTLDSKPGTLCADDGQSPVPAEEVRSSILLIDKV
                     SAPPSAASTFSREATPLSSSGPPAADLMSSSLLIDMQPSTLVAPAEQEVPGHVAVTTP
                     TKVYSEVHLTLAKPASVVNRTARPFGIQSPGTSQIEQSPMMGRRQFGEKAWAPPASSM
                     ADRSPQPQRHIMSRSPMVERRLLGQRSPVLERRPLGNFTPPPTYAETLSTAPVASRVR
                     SPPSYSTLYPSSDPKPSHLKGQVAPANKTGILEESMARRGSRKSMFTFVEKPKVTPNP
                     DLLDLVQTADEKRRQRDHGEVGMEEEPFALGAEASNFQQEPIARDRASPAAAEEAVPE
                     WASCLKSPRIQAKPKPKPNQNLSEASGKGAELYARRQSRMEKYVIESSGHAELARCPS
                     PTMSLPSSWKYTTNAPGGFRVASLSPARTPPASLYHGYLPENGVLRPEPTKQQPYQMR
                     PSLYALSPVKEPAKASSRATSSRTPSRTVSPRAASPAKPSSLDLVPNLPRAGLPPSPA
                     LPRPSRSSPGLYTAPVQDSLQPTAVSPTYSSDISPVSPSRAWSPRAKQAPRPSFSTRN
                     AGIEAQDRPESLPTSPPWTPAASRPPSSLDGWVSPGPWEPGRGSSMSSPPPLPPPPPM
                     SPSWSERSVSPLRSETEARPPSRQLQALLARNIINAARRKSASPRPAPAETLRPFSPP
                     QGPPPPPARMRSPQPASPARNFRGAAFSPIPRSPLPIGPSSCASPRSPQAAPSRPFPY
                     RRSPTDSDVSLDSEDSGLKSPGILGYNICPRGWNGSLRLKRGSLPTEASCTT"
ORIGIN      
        1 acacacgtca gcatcaaggg ctttggcatg tgttaacggt ggctgggcag tgctccaggc
       61 ctgcagagat tttgatggaa gatgtatctt gaggagaaag aaaagacttt cgtataaaag
      121 tgtggctgga cccttgctgc tgctggactt ctgataggag ccaagaagaa ccctccgata
      181 gcccgctctg aaggggccat cctaacagaa ctcaggagga taaggaaaaa gtattggact
      241 tcgtctttac ccagcctaga aagaacttgc cttacccctc agctagatct cactccagcc
      301 ctgtgtgtca gcagaagaag gtgaatctgc agagaaccca aggagacctt gagaggaccc
      361 aggagcaaga ttcactcacc ccgagccagg cagtggtggt tgctgggcac tgccaaggag
      421 ggggccataa tgctgggtgc tcacttccca cccccgcccc ttggagccag cgagggaagg
      481 gctgcccctt gcaccttcca gatccctgat gggagctaca ggtgcctggc tctggaagct
      541 gaggagagca gtagtgaaga cggcttgcag ggagaggtga ggctggtgga cctggaagaa
      601 gaggggacca gccaaagcag agccaaccat gggacaccac cattatccag agccccggcc
      661 ataatccagc catccagctg tcacagggag gcacgaggtg gtttccagcg cagtgacagg
      721 ccaagccatg actgggatgt ggtacaggcc cggaaagtga tgacagccag tggcagcagc
      781 agccctgtgc ccagggtggc ccagaaacca gcactgggcc ggagcacaag cttcaccgaa
      841 aacgacctga aggaggccaa ggcgaggagc cagcagattg cagcccagct gaccacccct
      901 cccagctcca attcccgagg ggtccagctc ttcaacaggc gcaggcagag ggtgaacgag
      961 ttcaccttgg agagccgagg ccagaggtca ccaaagctca accaagaggc cctccaaaca
     1021 gggcgtcctt tgagccccat aggccatgcc ccggggccta gtgtgaagcc cacatctcca
     1081 tcaaagccag gctctccaaa gcaccccagt ccccaaagcc ccagccgagg ggtcgctggc
     1141 cacatcatgg aggggtactc agaggaagcc agtctgctgc ggcatctgga gaaggttgcc
     1201 agtgaggaag aggaagtgcc attggtagtt tatttaaagg agaatgcagc cctgctgaca
     1261 gccaatgggc tacacctgtc gcagagccga gagacccagc agtcctcacc aaaccctccc
     1321 gacactgaag tacccagtcc agctgcagat atcaaccaga acccgtcctc acctaatgcc
     1381 acactcacca cactagcctc tagcagtcac cacagtcagc ccaccgctga tatcaaccaa
     1441 aaccctccag ccgccatcac ccctgtccca cagaattcat cccaggcaca gtgctccccg
     1501 aatggcacac ttgattccaa acccggcact ctgtgtgctg atgatgggca gtccccggtg
     1561 ccggcagagg aggtgagatc cagcattctc ttgattgaca aggtgtcagc tccaccttct
     1621 gccgccagca ccttctctag agaagccacg cccctctcca gctctgggcc gccagcggca
     1681 gatctcatgt ccagctccct gctcattgac atgcagccta gcaccctagt ggcaccagca
     1741 gaacaagagg tgcctggcca tgtagctgtc accacgccca ctaaggtgta tagtgaagta
     1801 catctcacac tagccaagcc tgcatccgtg gtcaacagga ccgccaggcc ttttgggatc
     1861 cagtcgccag ggaccagcca gatagagcaa agccccatga tgggaagacg acagtttgga
     1921 gagaaggcct gggctcctcc tgctagcagt atggcggata ggagtcccca gccacagagg
     1981 cacataatgt cccgcagtcc catggtggaa aggagactgc ttgggcagcg aagcccggtc
     2041 ctagagagac gccccttagg aaatttcacc ccacccccca cctatgcgga gactttgtca
     2101 acagcccctg tggcttctcg ggttaggtct cccccctctt actccactct gtatcccagc
     2161 tctgacccca agccttccca tttgaaaggt caggtagccc ctgccaacaa gacaggaatt
     2221 ttggaagaat ctatggcacg ccgaggcagc cggaaatcaa tgttcacttt cgtggagaag
     2281 cccaaggtga ccccgaatcc agatttgctg gacctagtgc agacagctga tgagaagcgg
     2341 aggcagagag accacgggga ggtgggcatg gaagaagagc cctttgccct gggagctgag
     2401 gcctccaact tccagcagga gccaatagct cgggacaggg ccagccctgc ggcagctgag
     2461 gaagctgtcc ctgagtgggc ctcttgcctc aagtcacccc gtatccaggc caagccgaag
     2521 cccaaaccca atcagaacct ctcggaagcc tcagggaagg gggctgagct ctatgcccgc
     2581 cgccagtcac ggatggagaa atacgtcata gagtcttcag gccatgccga attggcccgc
     2641 tgcccttcac ctaccatgtc cctgccttca tcctggaagt acaccactaa cgcccctggg
     2701 ggcttccgag tggcatcctt aagtccagcg cggaccccgc ctgcctctct ctaccacggc
     2761 tatctgccag agaatggagt cctgcgccct gaacctacca agcagcagcc ataccagatg
     2821 cggccttccc tctatgctct gtcgcccgtc aaggaacctg ccaaggcctc atcgcgtgcc
     2881 acctcatcgc gcactccatc acgcactgtc tcacctcgag ctgcctcccc ggccaagcct
     2941 agctctctgg acctggtgcc caacctgccc agagcaggcc tcccaccatc tcctgctctg
     3001 cctcggcctt cccgctcctc cccaggcctc tacactgccc cagtccaaga cagcctccag
     3061 cccactgccg tgagtcccac ttacagcagt gatatctccc ccgtgtctcc ctccagggcg
     3121 tggtctcctc gagccaagca ggctcccagg ccttccttct ccacccggaa tgctgggatc
     3181 gaggcccagg accgcccgga gagcctgccc acgtccccgc cctggacgcc ggccgcttcc
     3241 cggcctccta gcagcctgga cggctgggtg agcccggggc cgtgggagcc gggccgcggg
     3301 agcagcatga gcagccctcc gccgctgccg ccgcctccac caatgtcccc ctcgtggagc
     3361 gagcgctccg tctccccgct gcgatcggag accgaggcgc ggcccccgag ccgccagctg
     3421 caggcgcttc tggcgcgcaa catcatcaac gcggcccggc gcaagagcgc ctccccgcgg
     3481 ccagcgccgg ctgagaccct gcggcccttt tccccgccgc aggggccgcc gccgccgccg
     3541 gcgcgcatgc gctctccgca gccagccagc cctgcccgta acttccgtgg agctgctttc
     3601 tctcccatcc cgcggagccc gttgcccatc ggaccttctt cctgtgctag tccccggagt
     3661 cctcaagccg cgccgtccag gccttttccc taccgccgct cacccacaga ctccgacgtg
     3721 tctctcgact ccgaggattc tgggcttaag tcgcctggca tcctcggcta caacatctgt
     3781 cctcggggct ggaatggcag cctgaggctc aagcgtggta gtctccccac cgaggcctcc
     3841 tgcaccacct aaagtttcat ctctgccccg ggagggtcga gccggaagag gcactaagct
     3901 tgggggaacc ccagcaccga gatccgaagg gtctgacctc attggacagc tctagagaaa
     3961 aaaggggtca gggaaggaga gctctgggct tggggggcct gtccatcaaa cttgggttgt
     4021 agcccttggt tttgccattt atttgtatgg ctctgaggaa gagcctcttg tctttgaccc
     4081 ttagctttgg ccaatgcagt ctccagacat cttccctttc cttccattca cgtgtgcctt
     4141 aggggaggca gctaagcaca cagccatcga ccttcatcat tgccaggctt ccatgcttct
     4201 tcctccaaca ctgctttcta cagcctggca aatgaagtat gtgttgaaaa gaaccttggc
     4261 catgacctgg gcccgggccc tggcttgacc gtcgctcctg gcatcaagtc ccaggcggga
     4321 gcagctgttt tccatctctt cgcagactag ctctattttt atctggtgac ctttaaagag
     4381 atctcccagg caagctcaag gtgccctgct gggcccctct ggggagaagg ggctggaaga
     4441 ttctctccag gcactgccat gctgctttct ctatcccccc cagctcaggg tgtctagact
     4501 atccctatgg ccagggcaga gcagagagta aagttccctg gggctatggg tctcaggagc
     4561 cccagactcc tgtttttctg ggcttattga tggctagttt taggtttttc aaaaccgggg
     4621 agagacgaga aggcagtcta gggtgtgtta cctatttgga aaggggttct tgttgcagaa
     4681 tatgcaaacc atggccagga tacgtagaca agacttaagt attgggtgga gctgactctt
     4741 gacctctgag gattcttgaa attcactcca tagtatcaga aatcgagggg ttaaggggga
     4801 gcttcacagg gctcgaattc cgatgcaaat aaacctgggt gggaagtcaa gtatgccagt
     4861 atgggcttgc catagtgtct atagtatgcc cagaagggtg ggcattgtta tattcatttt
     4921 cttcacatct cactgtggcc tggatcatgc ctatacccag tggccttaag gtgcctctcc
     4981 ccttaatctc agtgactctg attccagtcc ccaagagtga ctgggggaag aagagctgag
     5041 ttttgtgtgt ttcatagtca acaggtgata tcccttgaag gttcagagta tcatcttcag
     5101 aattcagagc ctggggctgg gggtgctgga gttagatgag gcacaaatat atgacggtgg
     5161 gggaaaatac taggatgttg ttaaaggtaa gggatgatgc gattttggag tgattagtag
     5221 atttgcccac atatcagggt tatctagagc tcctgagtaa ggttagggga agctagggtc
     5281 aggatggaat aaagtcaggg ttggaatgga gtgcatcgga atagaggggt gatcttggta
     5341 ggttcctatt gcccatgggt ttgagaacca ggccctggga agatgagaga gtactcagct
     5401 cctacctggt gcagcatccc ttgtagttac agagtcccaa gctagggaag cctcccagag
     5461 aagagaccct actagaattc tagctcatgc tttggcatac atagatcagc ttctacctgc
     5521 aattcctggg ataaccagga gggggcagct ttgagaagct acagttctgt tcccgcagtt
     5581 gtcatagtga ctgccttctc acttagctgg tctctaaaac ccaccacagc ttgcctgtat
     5641 cctgccttgt gcctcttgta gaattcagag caataaatgc gttctgcatt cttgtgc
//
