LOCUS       XM_030248905            7001 bp    mRNA    linear   ROD 07-FEB-2024
DEFINITION  PREDICTED: Mus musculus synaptojanin 1 (Synj1), transcript variant
            X18, mRNA.
ACCESSION   XM_030248905
VERSION     XM_030248905.2
DBLINK      BioProject: PRJNA169
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000082.7) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Sep 21, 2020 this sequence version replaced XM_030248905.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001635.27-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/01/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7001
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6J"
                     /db_xref="taxon:10090"
                     /chromosome="16"
     gene            1..7001
                     /gene="Synj1"
                     /gene_synonym="A930006D20Rik; mKIAA0910"
                     /note="synaptojanin 1; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 3 mRNAs, 68 ESTs, 1648
                     long SRA reads, 4 Proteins, and 99% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     16 samples with support for all annotated introns"
                     /db_xref="GeneID:104015"
                     /db_xref="MGI:MGI:1354961"
     CDS             150..4853
                     /gene="Synj1"
                     /gene_synonym="A930006D20Rik; mKIAA0910"
                     /codon_start=1
                     /product="synaptojanin-1 isoform X18"
                     /protein_id="XP_030104765.1"
                     /db_xref="GeneID:104015"
                     /db_xref="MGI:MGI:1354961"
                     /translation="MAFSKGFRIYHKLDPPPFSLIVETRHKEECLMFESGAVAVLSSA
                     EKEAIKGTYAKVLDAYGLLGVLRLNLGDTMLHYLVLVTGCMSVGKIQESEVFRVTSTE
                     FISLRVDASDEDRISEVRKVLNSGNFYFAWSASGVSLDLSLNAHRSMQEHTTDNRFFW
                     NQSLHLHLKHYGVNCDDWLLRLMCGGVEIRTIYAAHKQAKACLISRLSCERAGTRFNV
                     RGTNDDGHVANFVETEQVIYLDDCVSSFIQIRGSVPLFWEQPGLQVGSHRVRMSRGFE
                     ANAPAFDRHFRTLKDLYGKQIVVNLLGSKEGEHMLSKAFQSHLKASEHASDIHMVSFD
                     YHQMVKGGKAEKLHSILKPQVQKFLDYGFFYFDGSEVQRCQSGTVRTNCLDCLDRTNS
                     VQAFLGLEMLAKQLEALGLAEKPQLVTRFQEVFRSMWSVNGDSISKIYAGTGALEGKA
                     KLKDGARSVTRTIQNNFFDSSKQEAIDVLLLGNTLNSDLADKARALLTTGSLRVSEQT
                     LQSASSKVLKNMCENFYKYSKPKKIRVCVGTWNVNGGKQFRSIAFKNQTLTDWLLDAP
                     KLAGIQEFQDKRSKPTDIFAIGFEEMVELNAGNIVNASTTNQKLWAVELQKTISRDNK
                     YVLLASEQLVGVCLFVFIRPQHAPFIRDVAVDTVKTGMGGATGNKGAVAIRMLFHTTS
                     LCFVCSHFAAGQSQVKERNEDFVEIARKLSFPMGRMLFSHDYVFWCGDFNYRIDLPNE
                     EVKELIRQQNWDSLIAGDQLINQKNAGQIFRGFLEGKVTFAPTYKYDLFSEDYDTSEK
                     CRTPAWTDRVLWRRRKWPFDRSAEDLDLLNASFQDESKILYTWTPGTLLHYGRAELKT
                     SDHRPVVALIDIDIFEVEAEERQKIYKEVIAVQGPPDGTVLVSIKSSAQESTFFDDAL
                     IDELLRQFAHFGEVILIRFVEDKMWVTFLEGSSALNALSLNGKELLNRTITITLKSPD
                     WIKHLEEEMSLEKISVTLPSSASSTLLGEDAEVAADFDMEGDVDDYSAEVEELLPQHL
                     QPSSSSGLGTSPSSSPRTSPCQSPTVPEYSAPSLPIRPSRAPSRTPGPPSSQGSPVDT
                     QPAAQKDSSQTLEPKRPPPPRPVAPPARPAPPQRPPPPSGARSPAPARKEFGGVGAPP
                     SPGVARREIEAPKSPGTARKDNIGRNQPSPQAGLAGPGPAGYGAARPTIPARAGVISA
                     PQSQARVCAGRPTPDSQSKPSETLKGPAVLPEPLKPQAAFPQQPSLPTPAQKLQDPLV
                     PIAAPTMPPSGPQPNLETPPQPPPRSRSSQSLPSDSSPQLQVKINGISGVKQEPTLKS
                     DPFEDLSLSVLAVSKAQPSVQISPVLTPDPKMLIQLPSASQSQVNPLSSVSCMPTRPP
                     GPEESKSQESMGSSANPFPSLPCRNPFTDRTAAPGNPFRVQSQESEATSWLSKEEPVP
                     NSPFPPLMPLSHDTSKASSSLGGFEDNFDLQSQSTVKTSNPKGWVTFDEDDNFPTTGK
                     SKSVCPDLVGNAPASFDDDWSKGASVSFCVLPARRPPPPPPPVPLLPPGTTSSAGPST
                     TLPSKAPSTLDFTER"
ORIGIN      
        1 ggaagaggtg aggcagcggg cgggagggcg gggggcgggg agcggcccgg gctctaccca
       61 ggggcagccg gccggccggg tggacgcttc ctgagcggtg gcggccgtcg cagccgggtc
      121 gcaagcgggc tgcctctgaa gaaaggagaa tggcgttcag caaaggattt cgaatctacc
      181 acaaattgga tcccccaccg ttcagcctca tagtggaaac taggcataag gaagaatgtc
      241 tcatgttcga gtctggggct gtggctgtgc tctcatctgc agaaaaggag gctattaaag
      301 gcacatatgc caaagtactg gatgcatacg gacttttggg agttttacga ttaaatcttg
      361 gtgataccat gctgcactat ctggtcctag tcactggatg catgtctgtg gggaaaatcc
      421 aagaatctga agttttccga gttacttcca ctgagtttat atcattgcga gttgatgctt
      481 cagatgagga ccgcatttcg gaagtacgaa aagttttgaa ctcgggaaac ttttattttg
      541 catggtctgc atctggagtc agcttagatc tgagtctgaa tgcacatcga agcatgcaag
      601 agcacacaac cgacaatagg tttttctgga atcagtctct gcatttgcat ctcaagcact
      661 atggtgtgaa ctgcgatgac tggttattac ggctcatgtg tgggggagta gagattagaa
      721 ccatttatgc tgcccataaa caggcaaaag cttgcctcat ctcaagacta agctgtgaac
      781 gagctgggac aaggttcaat gtccggggaa ccaacgatga tggtcatgtt gccaactttg
      841 tagagacaga gcaggttata tacttagatg actgtgtctc ttccttcata caaatccgag
      901 gatctgttcc attgttctgg gagcaaccag ggttgcaagt gggatcccat cgtgttcgta
      961 tgtcaagggg atttgaagcc aatgcgcctg cctttgacag gcatttccga acacttaagg
     1021 acttatatgg taaacagata gtagtgaatc tgcttgggtc taaggaaggc gagcatatgc
     1081 tgagcaaggc tttccagagt catttaaaag cctctgaaca cgcttctgat atccacatgg
     1141 tgtcttttga ctatcatcaa atggttaaag gaggaaaggc agaaaaacta cacagtattc
     1201 tcaaaccaca agtccagaag tttctagatt atggattttt ttatttcgat ggcagtgaag
     1261 ttcaaaggtg ccagagtggt acagttcgaa caaactgctt ggattgtctg gatagaacaa
     1321 atagtgtgca ggcattcctt ggcttagaga tgctcgctaa gcagctggaa gctctgggct
     1381 tggctgagaa gcctcagctg gtgacccgct tccaagaagt tttccggtcc atgtggtctg
     1441 tgaatggcga ctcaatcagt aaaatatatg caggcaccgg ggccctggaa gggaaggcca
     1501 agttaaaaga tggtgcgcga tctgtcacca gaaccatcca gaataacttc ttcgacagct
     1561 ccaagcagga agccattgat gtcctgctcc tgggaaatac tctcaacagc gatttagctg
     1621 acaaagcccg agcgcttcta actactggaa gtttgcgtgt ttctgaacag acattacagt
     1681 cagcatcttc caaagtctta aagaacatgt gtgagaactt ctacaaatac tcaaagccca
     1741 agaagatccg agtgtgtgtt ggcacctgga atgtgaacgg cgggaagcag ttccgcagca
     1801 tagcgttcaa gaaccagacg ctcacagact ggcttctgga cgctcccaag ttagccggca
     1861 tccaggagtt tcaagataag agaagtaagc caactgatat atttgcaatt ggctttgaag
     1921 aaatggtgga gctgaatgct gggaacattg tgaatgcaag cacaaccaac cagaagctgt
     1981 gggcagtgga gctgcagaag accatctcca gggacaacaa gtatgtcctg ctggcctcgg
     2041 agcagctggt gggtgtctgc ctgtttgtct ttatcagacc acagcacgct ccttttatca
     2101 gggatgttgc agttgatact gtgaaaactg gcatgggagg tgcaactgga aacaagggcg
     2161 ccgttgcaat tcggatgctc ttccacacca ccagcctttg cttcgtctgc agccactttg
     2221 ctgcagggca gtcccaagtc aaagagagaa atgaagattt tgtagaaata gcacgaaaac
     2281 tgagtttccc catgggacga atgctcttct cccatgacta tgtattttgg tgtggtgatt
     2341 tcaactatcg aattgacctt ccgaatgaag aggttaaaga gctcataaga caacaaaact
     2401 gggattctct gatcgctggg gatcagctca tcaaccagaa aaatgcagga cagatcttta
     2461 gaggattctt agagggaaaa gtaacgtttg ctccaaccta taaatatgac ttgttttctg
     2521 aagactatga caccagtgag aagtgtcgca cccctgcttg gacagaccgt gtcctctgga
     2581 gaaggaggaa gtggcctttt gacagatcag ctgaagattt agatctcctg aatgctagtt
     2641 tccaagatga aagtaaaatt ctttatacat ggacccctgg caccttgctg cactatggaa
     2701 gagccgagct gaagacttct gaccataggc ccgtcgttgc cttgattgac atagatatat
     2761 ttgaagttga agctgaagag agacaaaaaa tttataaaga agttattgcc gtccagggcc
     2821 caccagatgg cacagtgctg gtctcaatca aaagttctgc acaagaaagt actttttttg
     2881 atgatgcttt gattgatgag cttctgcggc agtttgcaca ctttggtgaa gttatactca
     2941 taagatttgt agaagataaa atgtgggtta catttttgga gggaagctct gccttgaatg
     3001 ctctgagcct aaatgggaaa gagctattaa atcggactat aacaattact ttaaaaagtc
     3061 cagactggat caaacatttg gaagaagaga tgagtttaga gaaaatcagt gtcacgttgc
     3121 cctcatcagc aagctccacc ctgcttggtg aagacgcaga ggtcgcagca gactttgaca
     3181 tggaaggtga cgtcgatgac tacagcgctg aagtagagga gcttcttcct cagcatctgc
     3241 agccgtcctc aagttctggc ctgggcactt ctccaagttc ttcaccccgg accagtccct
     3301 gccagtcccc cacagtacca gagtactccg ccccttctct tcccatcaga cctagccgag
     3361 caccgtcaag aactccagga cctccaagtt cgcagggctc tccagttgac actcagccag
     3421 cggcccagaa ggattcttcc cagactctag agcccaagag accaccccct ccccgcccag
     3481 tcgctcctcc ggcacgtcct gccccaccac agagaccacc tccaccttca ggggctagga
     3541 gtcctgcgcc tgctagaaaa gaatttggag gtgttggagc ccctcccagt cccggggttg
     3601 ctaggagaga gatagaagca cccaaaagcc ctggaacagc acggaaagat aatatagggc
     3661 gtaatcagcc ttcccctcaa gccggacttg caggcccagg acccgctgga tacggtgcgg
     3721 ctagaccgac aattccagct cgtgctggag tgatcagcgc ccctcagagc caggctcggg
     3781 tatgtgctgg aaggccgact cctgacagcc aaagcaagcc ctcggagaca ttgaaaggtc
     3841 ctgctgtcct tccagaacca ctgaagcctc aggctgcatt tcctcagcag ccttctctgc
     3901 ccacacctgc tcaaaagtta caggacccgc ttgtccccat agcagcacct actatgcctc
     3961 cctctggccc ccaaccaaat ttggaaaccc ccccacagcc cccacctcgg agcaggtcat
     4021 ctcaaagctt gccttcagac tcctcaccac agctgcaggt aaaaataaat ggcatttctg
     4081 gtgtcaaaca agagccaaca ttgaagagtg acccatttga agatctctca cttagtgtgc
     4141 ttgctgtatc aaaggctcag ccttctgttc agatttcacc tgttctaacc ccagacccaa
     4201 agatgttgat tcagttgcct tctgcatcgc aaagtcaagt taaccctttg agttctgtaa
     4261 gttgcatgcc aaccaggcct ccaggtccag aggaaagcaa gtcacaggag agtatgggca
     4321 gttctgcaaa cccgtttccc agcctgccct gccggaaccc ttttacagac aggactgctg
     4381 cccctggaaa cccatttaga gttcagtccc aagaatcaga ggcaacttct tggctctcca
     4441 aagaagagcc tgttcccaac agtcccttcc ctcctctcat gcctctcagt catgacacga
     4501 gcaaggcttc aagttcgctt ggtggctttg aggacaattt tgatctgcag agccagtcta
     4561 cagtaaaaac aagcaacccc aaaggatggg taacctttga cgaagacgac aactttccta
     4621 caacaggaaa gtcaaagtca gtttgtccag acttagtggg taacgcgcca gcttcatttg
     4681 atgatgactg gagtaaaggt gcgagcgttt ctttctgtgt gttgccagcc agaaggccac
     4741 caccaccacc acctcctgtc cctctgctac cacctggcac aacctcatct gcaggaccta
     4801 gcacaaccct gccatctaag gcaccttcca cattggactt cacggaaaga taattaagta
     4861 gggagggcgg gagtttctcc tcgtgtgttt ggctgtttgt ttctgttttg tcagggtgga
     4921 tccaagagaa tggggcatta gtcagtcatg tgcaataaat gatcagtaag agcactgata
     4981 tttatataaa ataccactgg aggatgtgga gaaagctgga atttgtgtat atcagaaata
     5041 acaaagacat cctcttatta actggagttc tactttttct cttcagatga atagaataga
     5101 gcaggaacta tttttaaaag tgcttaaaac tactctagaa aatagtcctt attcgcatag
     5161 tcacataaaa atcacgtaaa gcccacacaa ctgcagctga caggactgca gcccattgtg
     5221 ctgttgagga ttggtagtca tggatactta ccaaagagct tccagagttc tggtgagatt
     5281 gttgtgaaag gcatcacttt agtcaaaagg tctgtgtatg tgtacactat gagtatatgt
     5341 ctgtatttat gcacacaaac atgtatacat ccacatactt ataaaacttg atataattca
     5401 gatcaaattt tacctaacag ttctgacaat gtcctttttt caatatctgt caagaagatg
     5461 gccgccaccg gctgtgcttt ctatattttg actgattgtg catcctggag tagaataatc
     5521 cctttagaga actgccattt cctattattc tctaccccag cccttcagag tcaccctcat
     5581 taccttcctc ctctgtacct ctatgatgcc tttctctggg catttacagt tggccgtctg
     5641 gacgtggtcg gtcacgtgga cagatagaag agtgggcgca caccaccagc ttcacggagg
     5701 aacattgtcc gtgtgctctt ttctctgcgt ggccctttgc ccttccatac ctttctgttt
     5761 gccagttgcc tggagctctg ctttcagctg ttgagtggtc tgaattagga acatgtccag
     5821 tgtatgttct cccatgtaag aggctacata gcacatccat gatgctgctt taaggcttta
     5881 gaggctatac ctcaaattag ctgtggattt tgtctcctgc actgccagta tgcaactgat
     5941 cttacgttta ttaattttgt gggaaaaaat acatggaatt tttacaaaaa aacaaaaaca
     6001 aaaaacaaac aaacaaaaaa aaaacaaaac aacaaaaaca tagtattttg atatcattag
     6061 ttaagccagt cagaaaactc cctaagctat tgtttggtca gttggttgtc agtcagctga
     6121 agttaaaaca tccttaccca ttaagactta atgttctctt tatataaaaa gagagttatg
     6181 tgcttacacc cacgttccta catctaccta cctgaacctt taaagatgtg tattgtaaga
     6241 ttagaaagga cgtatggctg ccctcacctc cgtgtaaaag cacagcaggc tgcatcgcac
     6301 ttctctccta gagcagatct gttaggacag agcacctttg caaatgctca gtgttatcac
     6361 aatcctgtgt ttatagaagt aactctgctg cagccatcac tcgctgttag caataactct
     6421 tgtgagtttt agatcgtgct tgttggggtt ctaatcattt caacagtagt agcttttaaa
     6481 ctgcagtatt actagagcag tgtgcttcaa aatgtgaatt aacttgttga gattgtggct
     6541 gtaacatctg tgtgagtagt gtgtatggta tccactcccc attagcaagc taatccactt
     6601 tagaaaactg aagcagtgtg gatcgcagcc ctgagcagtg actccctcag gtgtgaacca
     6661 ctgtaatgtc tgcagagcaa tagctctgcc ttgtcaggaa gtctggtagc tgctgaaacg
     6721 cacaaagcaa gttaaagttt gctacaaaga actcgacatc gtgtgtattt gccaggtctg
     6781 gtcaaagcag aaaacagaca ctaagaatct ctgtgagtct ctgttctctc tagtagattg
     6841 ctgtttatat gtatgtaaga ggtttatcgc ttatgtggca tacagtattt ataactatat
     6901 actttataga agtacagtat taaagttgct ggtatacatt ctgtacatat cttgtgagat
     6961 gtgctgtcat atgaaataaa tatgtcttta tcaccagctg a
//
