LOCUS       XM_011246075            9446 bp    mRNA    linear   ROD 07-FEB-2024
DEFINITION  PREDICTED: Mus musculus synaptojanin 1 (Synj1), transcript variant
            X1, mRNA.
ACCESSION   XM_011246075
VERSION     XM_011246075.4
DBLINK      BioProject: PRJNA169
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000082.7) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Sep 21, 2020 this sequence version replaced XM_011246075.3.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001635.27-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/01/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9446
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6J"
                     /db_xref="taxon:10090"
                     /chromosome="16"
     gene            1..9446
                     /gene="Synj1"
                     /gene_synonym="A930006D20Rik; mKIAA0910"
                     /note="synaptojanin 1; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 1 mRNA, 58 ESTs, 1735
                     long SRA reads, 5 Proteins, and 100% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     16 samples with support for all annotated introns"
                     /db_xref="GeneID:104015"
                     /db_xref="MGI:MGI:1354961"
     CDS             2154..7298
                     /gene="Synj1"
                     /gene_synonym="A930006D20Rik; mKIAA0910"
                     /codon_start=1
                     /product="synaptojanin-1 isoform X1"
                     /protein_id="XP_011244377.1"
                     /db_xref="GeneID:104015"
                     /db_xref="MGI:MGI:1354961"
                     /translation="MPDSSTNQHGLPQLFPEVPPCRPRGGQSYRAPREEDGPSLCRLP
                     WPCHLPTPGATEARFTDPGRGGRRNPVTSKRPARQHGPAWAETAPPFHPKGRAFRLGS
                     GAMRKSWTCWSGSDASGGCSGGGCGRRRRRSRRKRAASEERRMAFSKGFRIYHKLDPP
                     PFSLIVETRHKEECLMFESGAVAVLSSAEKEAIKGTYAKVLDAYGLLGVLRLNLGDTM
                     LHYLVLVTGCMSVGKIQESEVFRVTSTEFISLRVDASDEDRISEVRKVLNSGNFYFAW
                     SASGVSLDLSLNAHRSMQEHTTDNRFFWNQSLHLHLKHYGVNCDDWLLRLMCGGVEIR
                     TIYAAHKQAKACLISRLSCERAGTRFNVRGTNDDGHVANFVETEQVIYLDDCVSSFIQ
                     IRGSVPLFWEQPGLQVGSHRVRMSRGFEANAPAFDRHFRTLKDLYGKQIVVNLLGSKE
                     GEHMLSKAFQSHLKASEHASDIHMVSFDYHQMVKGGKAEKLHSILKPQVQKFLDYGFF
                     YFDGSEVQRCQSGTVRTNCLDCLDRTNSVQAFLGLEMLAKQLEALGLAEKPQLVTRFQ
                     EVFRSMWSVNGDSISKIYAGTGALEGKAKAGKLKDGARSVTRTIQNNFFDSSKQEAID
                     VLLLGNTLNSDLADKARALLTTGSLRVSEQTLQSASSKVLKNMCENFYKYSKPKKIRV
                     CVGTWNVNGGKQFRSIAFKNQTLTDWLLDAPKLAGIQEFQDKRSKPTDIFAIGFEEMV
                     ELNAGNIVNASTTNQKLWAVELQKTISRDNKYVLLASEQLVGVCLFVFIRPQHAPFIR
                     DVAVDTVKTGMGGATGNKGAVAIRMLFHTTSLCFVCSHFAAGQSQVKERNEDFVEIAR
                     KLSFPMGRMLFSHDYVFWCGDFNYRIDLPNEEVKELIRQQNWDSLIAGDQLINQKNAG
                     QIFRGFLEGKVTFAPTYKYDLFSEDYDTSEKCRTPAWTDRVLWRRRKWPFDRSAEDLD
                     LLNASFQDESKILYTWTPGTLLHYGRAELKTSDHRPVVALIDIDIFEVEAEERQKIYK
                     EVIAVQGPPDGTVLVSIKSSAQESTFFDDALIDELLRQFAHFGEVILIRFVEDKMWVT
                     FLEGSSALNALSLNGKELLNRTITITLKSPDWIKHLEEEMSLEKISVTLPSSASSTLL
                     GEDAEVAADFDMEGDVDDYSAEVEELLPQHLQPSSSSGLGTSPSSSPRTSPCQSPTVP
                     EYSAPSLPIRPSRAPSRTPGPPSSQGSPVDTQPAAQKDSSQTLEPKRPPPPRPVAPPA
                     RPAPPQRPPPPSGARSPAPARKEFGGVGAPPSPGVARREIEAPKSPGTARKDNIGRNQ
                     PSPQAGLAGPGPAGYGAARPTIPARAGVISAPQSQARVCAGRPTPDSQSKPSETLKGP
                     AVLPEPLKPQAAFPQQPSLPTPAQKLQDPLVPIAAPTMPPSGPQPNLETPPQPPPRSR
                     SSQSLPSDSSPQLQVKINGISGVKQEPTLKSDPFEDLSLSVLAVSKAQPSVQISPVLT
                     PDPKMLIQLPSASQSQVNPLSSVSCMPTRPPGPEESKSQESMGSSANPFPSLPCRNPF
                     TDRTAAPGNPFRVQSQESEATSWLSKEEPVPNSPFPPLMPLSHDTSKASSSLGGFEDN
                     FDLQSQSTVKTSNPKGWVTFDEDDNFPTTGKSKSVCPDLVGNAPASFDDDWSKGASVS
                     FCVLPARRPPPPPPPVPLLPPGTTSSAGPSTTLPSKAPSTLDFTER"
ORIGIN      
        1 gcctatgcta acacttagga acaggcttgg acactgtcct aggagtctga tgcaaggtga
       61 atggagacca gaactgcata tagaaagtgc tcgttatgtc tcgacgaggt tgtcactcct
      121 gaatgagtaa agagcactaa atatggaatt ctcagctgcc ataacactgg tatttactag
      181 ctgagtgtct tagaacagct actctcttga gtgcttaagg ccaaaaactg gaaataactg
      241 tcactggaat catgtatctt ataaaggttc tcagctcaac gtatagattc tagtggtttc
      301 tggtgcacct gggtttgtca taattctcca ttctaccatt tgtcttcatg cccctacatg
      361 gggacctgat tcccctctgc ctcctttgta acaaacggta cctgtgattt cgtctcggtc
      421 tcttgtataa ccacaacagt ctaccagata tccaaaactt ttttagactc gggtcaccca
      481 gtcatctgtc gtttgctagc gacaagaatc agggtatgag cattctgaca gcctcaccat
      541 tgctcagttc cagtcagcac aattggcttc tttgcaaagc tttagactgt gcctatatat
      601 tttgagttag tctactatag acactggttt gctaaaacgt gcagctactt ggatatgttg
      661 taacaataat aaatagaaaa gggacaataa ggaatgttca aaggtcacta gtatgctttt
      721 caaatcttgg gtttatttta taattaaaaa tgtattttga aaggacttgg gaaagctaag
      781 acctaccact gctgctttag cttaatttga agaaagacat tataacagaa gcttggacct
      841 ccgctttctt agttcaggat accaagaata ggcagaaggc tggctttaga aagcgcttag
      901 tgccatgatt tccaccttga caaagagttt ttggtgtagt ttcacaggga ttcttggtgt
      961 gaaaagaatg atggggtaag caagtttgat tacagctcca cttggggtaa tttcagttgt
     1021 cataaaaagg ttcatcccta gggctgggga tgccccccag cttgtagaat gcctgcctgg
     1081 tacgcatgaa gctttgggtt cagtctgtca ccacgtaaac caggtatggt tggcacacta
     1141 gcctgggctc tgtgctactt tgtctcaaaa aacaaaagct acctccaaag tactacaatt
     1201 cagtggccag ctctcctgaa cccgtttttg tcggtgcatg tcatatacag tcatcacact
     1261 taagaaaaat cccactctca aacatccctg ttttatttaa aggactgtcc ccacctgaaa
     1321 tggacacttc ttgggaggga aaaatggcta accacaattc acagcaagca attgttatta
     1381 taagcttgtg gttactgtaa ccacaacaaa aaagtaaaag ttgttcttag gagactaagt
     1441 gaaaagatct aagaactgaa tccaagtgtg tatctccttg gctggaggtg gcttctcttg
     1501 tgtttagttt gcttttaata ttttaaaact agggtggatt tgtcttctct aaaatagaga
     1561 agcgttgagt cacatgacag catgttagag gaaatgtttt tatgcaatac gtcatattta
     1621 aattgtgctt ttgggaagaa agtaaaaagg ggaagaggct aggggaaagc aaaggcaaat
     1681 ggaacatgat tgccgtgctc cttggattct caattcctct ctaaagcccc agggactaca
     1741 atgtcctccc atttttgtct ctgaagtata ggcagaataa ttctgctgga cacaagtttt
     1801 agacataatg tctcgtttaa aaagatagtt tgaaacagtg tgatgccctt agttataaaa
     1861 ttccacggct ggcaaatcga cagtgacagc catgttttgt ttgactgcct ggagtttctg
     1921 gttgctggct tcccccactc tccactgcat tcggttgagc actcttccat cgcccctgga
     1981 gctcggagaa cacactgaaa cagccaggga acagcctcct gctgcctccc tgacgacaga
     2041 caccatggac agctcttcga gcgccaccca gccggcgcgg ggtgcacacc gtcccccgcc
     2101 tcgcactcgc ccatcgccca tcaggtctgc ggaggcggca gggggtggtc ctgatgcccg
     2161 actcgagcac gaatcaacac gggctccccc agctctttcc tgaagtccct ccctgtcgcc
     2221 cgcggggagg gcagagctac agggctccac gcgaggagga cggaccctcc ctctgccggc
     2281 tcccctggcc gtgccacctt cccactcccg gggcgacgga ggctcgcttc acggacccag
     2341 gacgcggcgg ccgcaggaac ccggtgacca gtaagcgccc tgctcggcag cacggtcccg
     2401 cgtgggcgga aacggctccg ccctttcacc ctaaggggcg ggccttccgc ctgggcagcg
     2461 gcgcaatgcg gaagagctgg acctgctgga gcggaagtga cgcttcgggc ggctgtagcg
     2521 gcggaggctg cgggagaagg aggaggagga gccggaggaa gagggctgcc tctgaagaaa
     2581 ggagaatggc gttcagcaaa ggatttcgaa tctaccacaa attggatccc ccaccgttca
     2641 gcctcatagt ggaaactagg cataaggaag aatgtctcat gttcgagtct ggggctgtgg
     2701 ctgtgctctc atctgcagaa aaggaggcta ttaaaggcac atatgccaaa gtactggatg
     2761 catacggact tttgggagtt ttacgattaa atcttggtga taccatgctg cactatctgg
     2821 tcctagtcac tggatgcatg tctgtgggga aaatccaaga atctgaagtt ttccgagtta
     2881 cttccactga gtttatatca ttgcgagttg atgcttcaga tgaggaccgc atttcggaag
     2941 tacgaaaagt tttgaactcg ggaaactttt attttgcatg gtctgcatct ggagtcagct
     3001 tagatctgag tctgaatgca catcgaagca tgcaagagca cacaaccgac aataggtttt
     3061 tctggaatca gtctctgcat ttgcatctca agcactatgg tgtgaactgc gatgactggt
     3121 tattacggct catgtgtggg ggagtagaga ttagaaccat ttatgctgcc cataaacagg
     3181 caaaagcttg cctcatctca agactaagct gtgaacgagc tgggacaagg ttcaatgtcc
     3241 ggggaaccaa cgatgatggt catgttgcca actttgtaga gacagagcag gttatatact
     3301 tagatgactg tgtctcttcc ttcatacaaa tccgaggatc tgttccattg ttctgggagc
     3361 aaccagggtt gcaagtggga tcccatcgtg ttcgtatgtc aaggggattt gaagccaatg
     3421 cgcctgcctt tgacaggcat ttccgaacac ttaaggactt atatggtaaa cagatagtag
     3481 tgaatctgct tgggtctaag gaaggcgagc atatgctgag caaggctttc cagagtcatt
     3541 taaaagcctc tgaacacgct tctgatatcc acatggtgtc ttttgactat catcaaatgg
     3601 ttaaaggagg aaaggcagaa aaactacaca gtattctcaa accacaagtc cagaagtttc
     3661 tagattatgg atttttttat ttcgatggca gtgaagttca aaggtgccag agtggtacag
     3721 ttcgaacaaa ctgcttggat tgtctggata gaacaaatag tgtgcaggca ttccttggct
     3781 tagagatgct cgctaagcag ctggaagctc tgggcttggc tgagaagcct cagctggtga
     3841 cccgcttcca agaagttttc cggtccatgt ggtctgtgaa tggcgactca atcagtaaaa
     3901 tatatgcagg caccggggcc ctggaaggga aggccaaggc tggaaagtta aaagatggtg
     3961 cgcgatctgt caccagaacc atccagaata acttcttcga cagctccaag caggaagcca
     4021 ttgatgtcct gctcctggga aatactctca acagcgattt agctgacaaa gcccgagcgc
     4081 ttctaactac tggaagtttg cgtgtttctg aacagacatt acagtcagca tcttccaaag
     4141 tcttaaagaa catgtgtgag aacttctaca aatactcaaa gcccaagaag atccgagtgt
     4201 gtgttggcac ctggaatgtg aacggcggga agcagttccg cagcatagcg ttcaagaacc
     4261 agacgctcac agactggctt ctggacgctc ccaagttagc cggcatccag gagtttcaag
     4321 ataagagaag taagccaact gatatatttg caattggctt tgaagaaatg gtggagctga
     4381 atgctgggaa cattgtgaat gcaagcacaa ccaaccagaa gctgtgggca gtggagctgc
     4441 agaagaccat ctccagggac aacaagtatg tcctgctggc ctcggagcag ctggtgggtg
     4501 tctgcctgtt tgtctttatc agaccacagc acgctccttt tatcagggat gttgcagttg
     4561 atactgtgaa aactggcatg ggaggtgcaa ctggaaacaa gggcgccgtt gcaattcgga
     4621 tgctcttcca caccaccagc ctttgcttcg tctgcagcca ctttgctgca gggcagtccc
     4681 aagtcaaaga gagaaatgaa gattttgtag aaatagcacg aaaactgagt ttccccatgg
     4741 gacgaatgct cttctcccat gactatgtat tttggtgtgg tgatttcaac tatcgaattg
     4801 accttccgaa tgaagaggtt aaagagctca taagacaaca aaactgggat tctctgatcg
     4861 ctggggatca gctcatcaac cagaaaaatg caggacagat ctttagagga ttcttagagg
     4921 gaaaagtaac gtttgctcca acctataaat atgacttgtt ttctgaagac tatgacacca
     4981 gtgagaagtg tcgcacccct gcttggacag accgtgtcct ctggagaagg aggaagtggc
     5041 cttttgacag atcagctgaa gatttagatc tcctgaatgc tagtttccaa gatgaaagta
     5101 aaattcttta tacatggacc cctggcacct tgctgcacta tggaagagcc gagctgaaga
     5161 cttctgacca taggcccgtc gttgccttga ttgacataga tatatttgaa gttgaagctg
     5221 aagagagaca aaaaatttat aaagaagtta ttgccgtcca gggcccacca gatggcacag
     5281 tgctggtctc aatcaaaagt tctgcacaag aaagtacttt ttttgatgat gctttgattg
     5341 atgagcttct gcggcagttt gcacactttg gtgaagttat actcataaga tttgtagaag
     5401 ataaaatgtg ggttacattt ttggagggaa gctctgcctt gaatgctctg agcctaaatg
     5461 ggaaagagct attaaatcgg actataacaa ttactttaaa aagtccagac tggatcaaac
     5521 atttggaaga agagatgagt ttagagaaaa tcagtgtcac gttgccctca tcagcaagct
     5581 ccaccctgct tggtgaagac gcagaggtcg cagcagactt tgacatggaa ggtgacgtcg
     5641 atgactacag cgctgaagta gaggagcttc ttcctcagca tctgcagccg tcctcaagtt
     5701 ctggcctggg cacttctcca agttcttcac cccggaccag tccctgccag tcccccacag
     5761 taccagagta ctccgcccct tctcttccca tcagacctag ccgagcaccg tcaagaactc
     5821 caggacctcc aagttcgcag ggctctccag ttgacactca gccagcggcc cagaaggatt
     5881 cttcccagac tctagagccc aagagaccac cccctccccg cccagtcgct cctccggcac
     5941 gtcctgcccc accacagaga ccacctccac cttcaggggc taggagtcct gcgcctgcta
     6001 gaaaagaatt tggaggtgtt ggagcccctc ccagtcccgg ggttgctagg agagagatag
     6061 aagcacccaa aagccctgga acagcacgga aagataatat agggcgtaat cagccttccc
     6121 ctcaagccgg acttgcaggc ccaggacccg ctggatacgg tgcggctaga ccgacaattc
     6181 cagctcgtgc tggagtgatc agcgcccctc agagccaggc tcgggtatgt gctggaaggc
     6241 cgactcctga cagccaaagc aagccctcgg agacattgaa aggtcctgct gtccttccag
     6301 aaccactgaa gcctcaggct gcatttcctc agcagccttc tctgcccaca cctgctcaaa
     6361 agttacagga cccgcttgtc cccatagcag cacctactat gcctccctct ggcccccaac
     6421 caaatttgga aaccccccca cagcccccac ctcggagcag gtcatctcaa agcttgcctt
     6481 cagactcctc accacagctg caggtaaaaa taaatggcat ttctggtgtc aaacaagagc
     6541 caacattgaa gagtgaccca tttgaagatc tctcacttag tgtgcttgct gtatcaaagg
     6601 ctcagccttc tgttcagatt tcacctgttc taaccccaga cccaaagatg ttgattcagt
     6661 tgccttctgc atcgcaaagt caagttaacc ctttgagttc tgtaagttgc atgccaacca
     6721 ggcctccagg tccagaggaa agcaagtcac aggagagtat gggcagttct gcaaacccgt
     6781 ttcccagcct gccctgccgg aaccctttta cagacaggac tgctgcccct ggaaacccat
     6841 ttagagttca gtcccaagaa tcagaggcaa cttcttggct ctccaaagaa gagcctgttc
     6901 ccaacagtcc cttccctcct ctcatgcctc tcagtcatga cacgagcaag gcttcaagtt
     6961 cgcttggtgg ctttgaggac aattttgatc tgcagagcca gtctacagta aaaacaagca
     7021 accccaaagg atgggtaacc tttgacgaag acgacaactt tcctacaaca ggaaagtcaa
     7081 agtcagtttg tccagactta gtgggtaacg cgccagcttc atttgatgat gactggagta
     7141 aaggtgcgag cgtttctttc tgtgtgttgc cagccagaag gccaccacca ccaccacctc
     7201 ctgtccctct gctaccacct ggcacaacct catctgcagg acctagcaca accctgccat
     7261 ctaaggcacc ttccacattg gacttcacgg aaagataatt aagtagggag ggcgggagtt
     7321 tctcctcgtg tgtttggctg tttgtttctg ttttgtcagg gtggatccaa gagaatgggg
     7381 cattagtcag tcatgtgcaa taaatgatca gtaagagcac tgatatttat ataaaatacc
     7441 actggaggat gtggagaaag ctggaatttg tgtatatcag aaataacaaa gacatcctct
     7501 tattaactgg agttctactt tttctcttca gatgaataga atagagcagg aactattttt
     7561 aaaagtgctt aaaactactc tagaaaatag tccttattcg catagtcaca taaaaatcac
     7621 gtaaagccca cacaactgca gctgacagga ctgcagccca ttgtgctgtt gaggattggt
     7681 agtcatggat acttaccaaa gagcttccag agttctggtg agattgttgt gaaaggcatc
     7741 actttagtca aaaggtctgt gtatgtgtac actatgagta tatgtctgta tttatgcaca
     7801 caaacatgta tacatccaca tacttataaa acttgatata attcagatca aattttacct
     7861 aacagttctg acaatgtcct tttttcaata tctgtcaaga agatggccgc caccggctgt
     7921 gctttctata ttttgactga ttgtgcatcc tggagtagaa taatcccttt agagaactgc
     7981 catttcctat tattctctac cccagccctt cagagtcacc ctcattacct tcctcctctg
     8041 tacctctatg atgcctttct ctgggcattt acagttggcc gtctggacgt ggtcggtcac
     8101 gtggacagat agaagagtgg gcgcacacca ccagcttcac ggaggaacat tgtccgtgtg
     8161 ctcttttctc tgcgtggccc tttgcccttc catacctttc tgtttgccag ttgcctggag
     8221 ctctgctttc agctgttgag tggtctgaat taggaacatg tccagtgtat gttctcccat
     8281 gtaagaggct acatagcaca tccatgatgc tgctttaagg ctttagaggc tatacctcaa
     8341 attagctgtg gattttgtct cctgcactgc cagtatgcaa ctgatcttac gtttattaat
     8401 tttgtgggaa aaaatacatg gaatttttac aaaaaaacaa aaacaaaaaa caaacaaaca
     8461 aaaaaaaaac aaaacaacaa aaacatagta ttttgatatc attagttaag ccagtcagaa
     8521 aactccctaa gctattgttt ggtcagttgg ttgtcagtca gctgaagtta aaacatcctt
     8581 acccattaag acttaatgtt ctctttatat aaaaagagag ttatgtgctt acacccacgt
     8641 tcctacatct acctacctga acctttaaag atgtgtattg taagattaga aaggacgtat
     8701 ggctgccctc acctccgtgt aaaagcacag caggctgcat cgcacttctc tcctagagca
     8761 gatctgttag gacagagcac ctttgcaaat gctcagtgtt atcacaatcc tgtgtttata
     8821 gaagtaactc tgctgcagcc atcactcgct gttagcaata actcttgtga gttttagatc
     8881 gtgcttgttg gggttctaat catttcaaca gtagtagctt ttaaactgca gtattactag
     8941 agcagtgtgc ttcaaaatgt gaattaactt gttgagattg tggctgtaac atctgtgtga
     9001 gtagtgtgta tggtatccac tccccattag caagctaatc cactttagaa aactgaagca
     9061 gtgtggatcg cagccctgag cagtgactcc ctcaggtgtg aaccactgta atgtctgcag
     9121 agcaatagct ctgccttgtc aggaagtctg gtagctgctg aaacgcacaa agcaagttaa
     9181 agtttgctac aaagaactcg acatcgtgtg tatttgccag gtctggtcaa agcagaaaac
     9241 agacactaag aatctctgtg agtctctgtt ctctctagta gattgctgtt tatatgtatg
     9301 taagaggttt atcgcttatg tggcatacag tatttataac tatatacttt atagaagtac
     9361 agtattaaag ttgctggtat acattctgta catatcttgt gagatgtgct gtcatatgaa
     9421 ataaatatgt ctttatcacc agctga
//
