LOCUS       NM_026780               1276 bp    mRNA    linear   ROD 04-FEB-2025
DEFINITION  Mus musculus SYF2 homolog, RNA splicing factor (S. cerevisiae)
            (Syf2), mRNA.
ACCESSION   NM_026780
VERSION     NM_026780.3
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 1276)
  AUTHORS   Shen,C.L., Tsai,Y.Y., Chou,S.J., Chang,Y.M. and Tarn,W.Y.
  TITLE     RBM4-mediated intron excision of Hsf1 induces BDNF for cerebellar
            foliation
  JOURNAL   Commun Biol 7 (1), 1712 (2024)
   PUBMED   39738787
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1276)
  AUTHORS   Bedogni,F. and Hevner,R.F.
  TITLE     Cell-Type-Specific Gene Expression in Developing Mouse Neocortex:
            Intermediate Progenitors Implicated in Axon Development
  JOURNAL   Front Mol Neurosci 14, 686034 (2021)
   PUBMED   34321999
  REMARK    Publication Status: Online-Only
REFERENCE   3  (bases 1 to 1276)
  AUTHORS   Chen,C.H., Chu,P.C., Lee,L., Lien,H.W., Lin,T.L., Fan,C.C., Chi,P.,
            Huang,C.J. and Chang,M.S.
  TITLE     Disruption of murine mp29/Syf2/Ntc31 gene results in embryonic
            lethality with aberrant checkpoint response
  JOURNAL   PLoS One 7 (3), e33538 (2012)
   PUBMED   22448250
  REMARK    GeneRIF: Disruption of mp29/Syf2/Ntc31 gene results in embryonic
            lethality with aberrant checkpoint response.
REFERENCE   4  (bases 1 to 1276)
  AUTHORS   Brouns,M.R., Peeters,M.C., Geurts,J.M., Merckx,D.M., Engelen,J.J.,
            Hekking,J.W., Terwindt-Rouwenhorst,E.A., Oosterbaan,M.E.,
            Geraedts,J.P. and van Straaten,H.W.
  TITLE     Toward positional cloning of the curly tail gene
  JOURNAL   Birth Defects Res A Clin Mol Teratol 73 (3), 154-161 (2005)
   PUBMED   15678492
REFERENCE   5  (bases 1 to 1276)
  AUTHORS   Chang,M.S., Chen,C.Y., Yeh,H.I., Fan,C.C., Huang,C.J. and Yang,Y.C.
  TITLE     Cloning, expression, and genomic organization of mouse mp29 gene
  JOURNAL   Biochem Biophys Res Commun 299 (2), 241-246 (2002)
   PUBMED   12437976
  REMARK    GeneRIF: Molecular cloning, expression, and genomic organization
REFERENCE   6  (bases 1 to 1276)
  AUTHORS   Brady,K.P., Rowe,L.B., Her,H., Stevens,T.J., Eppig,J.,
            Sussman,D.J., Sikela,J. and Beier,D.R.
  TITLE     Genetic mapping of 262 loci derived from expressed sequences in a
            murine interspecific cross using single-strand conformational
            polymorphism analysis
  JOURNAL   Genome Res 7 (11), 1085-1093 (1997)
   PUBMED   9371744
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from AL611963.24.
            
            On May 1, 2007 this sequence version replaced NM_026780.2.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK003787.1, AY033432.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374, SAMN00849375
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-39                AL611963.24        91544-91582
            40-144              AL611963.24        91744-91848
            145-270             AL611963.24        95020-95145
            271-388             AL611963.24        95496-95613
            389-479             AL611963.24        95938-96028
            480-578             AL611963.24        96547-96645
            579-1276            AL611963.24        97404-98101
FEATURES             Location/Qualifiers
     source          1..1276
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="4"
                     /map="4 67.15 cM"
     gene            1..1276
                     /gene="Syf2"
                     /gene_synonym="1110018L13Rik; Cbpin; D4Bwg1551e; Gcipip;
                     mp29; Ntc31; p29"
                     /note="SYF2 homolog, RNA splicing factor (S. cerevisiae)"
                     /db_xref="GeneID:68592"
                     /db_xref="MGI:MGI:1915842"
     exon            1..39
                     /gene="Syf2"
                     /gene_synonym="1110018L13Rik; Cbpin; D4Bwg1551e; Gcipip;
                     mp29; Ntc31; p29"
                     /inference="alignment:Splign:2.1.0"
     CDS             16..744
                     /gene="Syf2"
                     /gene_synonym="1110018L13Rik; Cbpin; D4Bwg1551e; Gcipip;
                     mp29; Ntc31; p29"
                     /note="CCNDBP1 interactor; GCIP-interacting protein p29
                     (Gcipip)"
                     /codon_start=1
                     /product="pre-mRNA-splicing factor SYF2"
                     /protein_id="NP_081056.1"
                     /db_xref="CCDS:CCDS18781.1"
                     /db_xref="GeneID:68592"
                     /db_xref="MGI:MGI:1915842"
                     /translation="MAAVTEVVVPADGAEARPLAAEELAAQKREQRLRKFRELHLKRN
                     EARKLNHQEVVEEDKRLKLPANWEAKKARLEWELQEEEKKKECAARGEDYEKVKLLEI
                     SAEDAERWERRKKKKNPDLGFSDYAAAQLRQYHRLTKQIKPDMESYERQREKHGEDFF
                     PTSNSLLHGTHVPSSEEIDRMVLDLEKQIEKRDKYSRRRPYNDDADIDYINERNAKFN
                     KKAERFYGKYTAEIKQNLERGTAV"
     exon            40..144
                     /gene="Syf2"
                     /gene_synonym="1110018L13Rik; Cbpin; D4Bwg1551e; Gcipip;
                     mp29; Ntc31; p29"
                     /inference="alignment:Splign:2.1.0"
     exon            145..270
                     /gene="Syf2"
                     /gene_synonym="1110018L13Rik; Cbpin; D4Bwg1551e; Gcipip;
                     mp29; Ntc31; p29"
                     /inference="alignment:Splign:2.1.0"
     exon            271..388
                     /gene="Syf2"
                     /gene_synonym="1110018L13Rik; Cbpin; D4Bwg1551e; Gcipip;
                     mp29; Ntc31; p29"
                     /inference="alignment:Splign:2.1.0"
     exon            389..479
                     /gene="Syf2"
                     /gene_synonym="1110018L13Rik; Cbpin; D4Bwg1551e; Gcipip;
                     mp29; Ntc31; p29"
                     /inference="alignment:Splign:2.1.0"
     exon            480..578
                     /gene="Syf2"
                     /gene_synonym="1110018L13Rik; Cbpin; D4Bwg1551e; Gcipip;
                     mp29; Ntc31; p29"
                     /inference="alignment:Splign:2.1.0"
     exon            579..1276
                     /gene="Syf2"
                     /gene_synonym="1110018L13Rik; Cbpin; D4Bwg1551e; Gcipip;
                     mp29; Ntc31; p29"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 agagagaagg ctgtaatggc ggctgtgact gaagttgtgg tccccgcgga tggcgcggaa
       61 gccaggccct tggcggccga ggagctggcg gcgcagaagc gggagcagag actacgcaag
      121 ttccgtgagc tgcatctgaa gcggaatgaa gctcgtaagc tgaatcacca ggaagttgtg
      181 gaagaagaca aaagacttaa gttgcctgca aactgggaag ccaagaaagc gcgtctggag
      241 tgggagctcc aggaagagga gaagaaaaag gagtgtgcag ctcgagggga agactacgag
      301 aaggtgaagt tgctggagat cagcgcagag gacgctgaga ggtgggagag gaggaagaag
      361 aagaagaacc ctgacttggg gttttcagat tatgctgctg cccaattacg ccagtatcac
      421 cggctgacca agcagatcaa acctgacatg gaaagctatg agcgacagag agagaagcat
      481 ggagaagatt ttttcccaac atccaacagt cttctccatg ggacgcacgt gccttcctca
      541 gaggaaattg acagaatggt tttagacctg gaaaagcaaa ttgaaaagcg agacaaatac
      601 agccgaagac gcccgtacaa tgatgatgcc gacatcgact acatcaatga gaggaacgcc
      661 aagttcaaca agaaagcaga gaggttctac gggaagtaca cggccgagat caagcagaac
      721 ctggagagag gcacagctgt gtgagcttaa acctcgggag cagcgcagaa gctgggaacg
      781 gtcggtcgga ggcttctgct ggcaaattca acctccctcg tgggaccagt cgattactgt
      841 cccacttccc ctgcctcccc actgggcttc tgaaataaat gtcttttctc acctcctctg
      901 ccacatgcat atgttcacat ttttgtgctt ggatagacga tgtatttctt gtagtaattg
      961 atgttttgta aaaatctaat ttgtataaat cctaattatt atttttctat gtattttaaa
     1021 tgtgcataac catataacct ttgaattatt ggggcttaga tgtacacggg tgcagtcact
     1081 gctgcttttg agtgttgtta ggaggaagac ggaagctcca gccgggcttt gggactggcc
     1141 aggaggggac tgagaagcag aggctgttga gacagatgct cctggagttc tggcactgtg
     1201 cccggactgg agtcagaggt catggccgtc agccgtgcac actccctttt taaagaacaa
     1261 taaaatgctt tggaat
//
