LOCUS       XM_006501294            4045 bp    mRNA    linear   ROD 07-FEB-2024
DEFINITION  PREDICTED: Mus musculus synapse defective 1, Rho GTPase, homolog 2
            (C. elegans) (Syde2), transcript variant X3, mRNA.
ACCESSION   XM_006501294
VERSION     XM_006501294.2
DBLINK      BioProject: PRJNA169
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000069.7) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Feb 9, 2015 this sequence version replaced XM_006501294.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001635.27-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/01/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4045
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6J"
                     /db_xref="taxon:10090"
                     /chromosome="3"
     gene            1..4045
                     /gene="Syde2"
                     /gene_synonym="C430017H16Rik"
                     /note="synapse defective 1, Rho GTPase, homolog 2 (C.
                     elegans); Derived by automated computational analysis
                     using gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 8 ESTs, 79 long SRA reads, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 9 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:214804"
                     /db_xref="MGI:MGI:3036264"
     CDS             135..2936
                     /gene="Syde2"
                     /gene_synonym="C430017H16Rik"
                     /codon_start=1
                     /product="rho GTPase-activating protein SYDE2 isoform X3"
                     /protein_id="XP_006501357.1"
                     /db_xref="GeneID:214804"
                     /db_xref="MGI:MGI:3036264"
                     /translation="MLKEKLLQGDLFENVYGSPLKKREPEDVRGPAELRGHQPLNNIT
                     VSKKRNWLYQSTLRSQSLDESKRSQDRRYFSLSPVSPPKHWVSHRPHCTHAVCNAARA
                     TLSRNGSSAFSEDNDADDEGEIWYNPIPEDDSLGIAHVLSLEEANTAALKLPVSMLSA
                     RDLMKAEPPSEDRGDVQTSQSNGINSADSMHSTEIMQHCKQRLGHRTQESPTAEDSPV
                     LKSASTGPGIIVSTNRTELRAMEPSSPSPSPGKKGSSITWSLPDKIKSPRTVRKLSMK
                     MKRLPEFSRKLGARGALHYVNNPDSTPPLSKWNCREIPQGVTLTSGNTTRNVISRYHL
                     DTTVSSRHSYRKKPLGSSKYSCKGGYLSDGDSPELRTRSSKHGSEHKLGKGRETVPSS
                     CSKNELDIGAFRHYSFADQPKCSQYISGLMSVHFYGAEGLKPPRIDSKDVFCAIQVDS
                     VNKARTALLTCRTTFLDMDHTFNIEIENAQHLKLVVFSWEPTPRRNRVCCHGTVVLPA
                     LFRVTKTHQLAVKLEPRGLIYVKVTLMEQWENSLHGLDKNREAVMFGVDIQKVVEKEN
                     VGLMVPLLIQKCIVEIEKRGCQVVGLYRLCGSAAVKKELREAFEKDSKTVGLCENQYP
                     DINVITGVLKDYLRELPSPLITKQLYEAVLDAMAKSPLKMSSSGCENEPSDSRLTVDL
                     LDCLPDVEKATLKMLLDHLKLVASYHEVNKMTCQNLAVCFGPVLLNQRQEASTHNNRV
                     FTDSEELASALDFKKHIEVLHYLLQLWPVQRLTVKEPRDSLCLEQSSSLNYLRRKKER
                     PCVLNLSGPDSSGVLRTRQARLDSPLSNRYAGDWSSCGESYSLNTRGNVKNLDYDDGP
                     LEGGESRQYSKTAGAEVMTAQRIPMSGGCTFQTYLTVQTIESTVDQKANLRDLQESID
                     TLIGNLERELNKNKLNMSV"
ORIGIN      
        1 cgcagacaac ctctccaaat ttgggcagtt ggaaagtgca tgaaaaccac gtcctctcgg
       61 tgacaacgga ccaaagaatc acactgacag ccccaaagaa agacgctcag caatcaagtt
      121 ttcattagct aaaaatgttg aaagagaaat tacttcaggg tgacttattt gagaatgtct
      181 atggctctcc actgaagaaa cgagaacctg aagatgtaag gggtcccgcc gagcttagag
      241 gtcaccagcc ccttaacaac atcacagttt caaagaagcg caattggctg tatcagagca
      301 ccctgaggtc tcagagtctg gacgagagca agcgaagcca ggacagacgc tatttctccc
      361 tctctcctgt gtctccaccc aagcattggg tatcccacag gccgcactgc acacatgcgg
      421 tgtgtaatgc tgccagggct acgttgtcca gaaacggctc ttcagccttt agcgaggaca
      481 atgatgcgga cgatgaagga gaaatatggt acaatcccat ccctgaggat gacagcttgg
      541 gcatagcaca cgtcttgagt cttgaggagg caaacaccgc cgccctgaag cttcctgtga
      601 gcatgttgtc tgccagagat ctgatgaagg cggagcctcc tagtgaagac agaggggacg
      661 tgcagacctc acagtcaaat ggaattaatt ctgcagattc catgcattct acagaaatta
      721 tgcagcactg caaacaaagg ttagggcaca ggacacaaga aagcccgacg gcagaggata
      781 gccctgtgtt gaaatctgct tctacaggtc ccgggatcat agtctctaca aataggactg
      841 aactgagagc gatggagccg tcttctccaa gccccagtcc tgggaagaaa ggcagttcca
      901 ttacttggtc tttaccagat aaaataaagt ctccacgcac tgtgaggaaa ctttctatga
      961 aaatgaaaag gttgccagaa ttcagccgaa agctgggggc caggggagct ttgcactatg
     1021 tgaataatcc ggatagcacc cctcctttgt ctaaatggaa ctgtcgagaa attcctcagg
     1081 gtgtcactct gacttccggg aacaccacca ggaacgtgat aagccggtac catcttgata
     1141 ccaccgtatc ctctcggcac agctaccgga agaaacccct tgggagctcg aagtattcct
     1201 gcaagggtgg gtacctcagc gacggagact cacccgaact gagaactaga tctagcaagc
     1261 atggatcgga gcacaaactt gggaaaggga gagaaactgt cccaagcagt tgtagcaaaa
     1321 atgaactaga catcggtgcc ttcagacatt acagctttgc ggatcaaccc aaatgctcgc
     1381 agtacatatc cggcctcatg agcgtacact tctatggagc tgagggttta aaaccgcccc
     1441 ggatagattc gaaagatgtg ttttgtgcca ttcaggtaga ctcagtgaac aaagccagaa
     1501 cggccctgct cacctgtcgg acgaccttct tagacatgga ccacacgttc aacatagaga
     1561 ttgaaaatgc gcagcatctg aagctggtgg tgttcagctg ggagcccacg ccgaggagga
     1621 accgcgtgtg ctgtcatggc acagtcgtcc tgcccgcttt attcagagtt acaaaaacgc
     1681 atcagctggc tgtcaagctg gagcccagag gccttattta cgtcaaggtg accctgatgg
     1741 aacagtggga gaattctctg cacggcctgg ataagaaccg cgaagcggtg atgttcggag
     1801 tcgacattca aaaagttgta gagaaagaaa acgtaggctt gatggtgccg ctgctgatac
     1861 agaaatgcat cgtggagatt gaaaagaggg gttgtcaggt tgtaggcctg tatcgattgt
     1921 gtggttcagc ggcggtgaag aaagagcttc gagaggcttt tgagaaggac agcaagactg
     1981 ttggtctgtg tgaaaaccag tacccagata taaatgtaat aacaggggtt cttaaggact
     2041 acttgagaga actcccttct cccctaataa ccaagcagct gtatgaggct gtgttggatg
     2101 ccatggcgaa gagtcctttg aaaatgtcgt ccagtggttg tgagaacgag cccagtgact
     2161 ccaggctcac tgtggacctc ctggattgcc tgccggacgt tgagaaggca accctgaaga
     2221 tgttgttgga tcatctgaaa ctggtggcct cctaccacga agtgaataag atgacctgcc
     2281 agaatttggc tgtgtgcttt ggaccagtgt tgcttaacca gaggcaagag gcttcaaccc
     2341 acaacaacag agtcttcacc gattctgaag agcttgccag tgctttggat tttaaaaaac
     2401 acatcgaggt tcttcattac ttgctccagc tctggccagt gcaacgctta actgtcaaag
     2461 aacccagaga cagtttgtgc ctggagcagt cgtcttctct gaattacttg aggcgaaaga
     2521 aagagcggcc gtgtgtgtta aacctgagcg gtccggattc atcaggggtg ctgaggacaa
     2581 ggcaggcccg attagacagt ccactcagca accgctatgc aggagactgg agcagctgtg
     2641 gggagagcta ctctttaaat acaagaggaa atgtcaagaa tttggactat gatgacggcc
     2701 ccttagaagg tggagaaagt agacagtata gcaaaacagc cggagcggaa gtcatgaccg
     2761 cacaacgaat ccccatgtca ggggggtgca cgtttcagac gtacttgacg gtacagacca
     2821 ttgaatccac ggtggatcag aaagctaacc tcagagattt gcaagagagc attgatactt
     2881 tgattggcaa tctggaacgt gagctcaaca aaaacaagct gaacatgagt gtttgagatg
     2941 gacggcttgt tttatttgtg atgatgtcat caagtttcat gtcaatcctt tttctgggga
     3001 aaaaatatat ataacatatt atatatatat atatatattg gatccttaag ttaattctta
     3061 ataagttcat gtcattcaat tataaacact attcattaat atggttattt tacttgtgaa
     3121 ctgagctgtt ctgggcataa aggtaaccag accttggggg atagtttaat aaaccttgcc
     3181 agttgtatgg aggagacatg cagatgtttg taagggtcgg gtacattatt atcccgacaa
     3241 ggcttcggcg agaatgttct tctgtacgtg gagacggatg ttctctgcag aggacactgc
     3301 agctggactg atttgcagtc agagtccctg tgcaatgtca tttggtcata tttcatttgc
     3361 aatatgaatg ctgctgctat aagaaaaatt tttataaatg taaaattata caggtattaa
     3421 tgtattttgt attaacattt cgtaattatt taagcttata aaattaaata tttttatggt
     3481 tctgagaata tatatttata acttaattat gcatataggt tttagaatga gggaaggggt
     3541 tggttacagc attccaaata ttttaaaaat aaggccaaag ttattagctt aaaaatgtct
     3601 ttttcaggga aagaatgttt aagttaaaag acaagttaca taagaccact tgaataaaaa
     3661 cgcaccagaa ctatttgagt agaagcaatt gcctttctgt ttttgctttg tagacacagt
     3721 ctcccctgtg gaaagttgta ttttatgttg aagtctttca gcttcataag ggatcaagtg
     3781 accagatgcc tgcactagtg acttaaaatg actctacctg ctctgtgcat ctctgtctcc
     3841 tgtgatgctc taagtattta tttatagagg tatccttaac atgctgactt cagtaactgc
     3901 ccttgtttct aaggaagtca tcttgccaga atgctacagg ttacaaattt tttaaatgta
     3961 ttaaaaaaaa cttttatact tacagaatgt gtaattttag aagtataaat gaatatgaat
     4021 tgccaagtat aaagtgtgac agcca
//
