LOCUS       NM_027875               3288 bp    mRNA    linear   ROD 30-APR-2024
DEFINITION  Mus musculus synapse defective 1, Rho GTPase, homolog 1 (C.
            elegans) (Syde1), mRNA.
ACCESSION   NM_027875 XM_359260 XM_903544 XM_909679
VERSION     NM_027875.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 3288)
  AUTHORS   Adams,D.J., Barlas,B., McIntyre,R.E., Salguero,I., van der
            Weyden,L., Barros,A., Vicente,J.R., Karimpour,N., Haider,A.,
            Ranzani,M., Turner,G., Thompson,N.A., Harle,V., Olvera-Leon,R.,
            Robles-Espinoza,C.D., Speak,A.O., Geisler,N., Weninger,W.J.,
            Geyer,S.H., Hewinson,J., Karp,N.A., Fu,B., Yang,F., Kozik,Z.,
            Choudhary,J., Yu,L., van Ruiten,M.S., Rowland,B.D., Lelliott,C.J.,
            Del Castillo Velasco-Herrera,M., Verstraten,R., Bruckner,L.,
            Henssen,A.G., Rooimans,M.A., de Lange,J., Mohun,T.J., Arends,M.J.,
            Kentistou,K.A., Coelho,P.A., Zhao,Y., Zecchini,H., Perry,J.R.B.,
            Jackson,S.P. and Balmus,G.
  CONSRTM   Sanger Mouse Genetics Project
  TITLE     Genetic determinants of micronucleus formation in vivo
  JOURNAL   Nature 627 (8002), 130-136 (2024)
   PUBMED   38355793
REFERENCE   2  (bases 1 to 3288)
  AUTHORS   Lo,H.F., Tsai,C.Y., Chen,C.P., Wang,L.J., Lee,Y.S., Chen,C.Y.,
            Liang,C.T., Cheong,M.L. and Chen,H.
  TITLE     Association of dysfunctional synapse defective 1 (SYDE1) with
            restricted fetal growth - SYDE1 regulates placental cell migration
            and invasion
  JOURNAL   J Pathol 241 (3), 324-336 (2017)
   PUBMED   27917469
REFERENCE   3  (bases 1 to 3288)
  AUTHORS   Wentzel,C., Sommer,J.E., Nair,R., Stiefvater,A., Sibarita,J.B. and
            Scheiffele,P.
  TITLE     mSYD1A, a mammalian synapse-defective-1 protein, regulates
            synaptogenic signaling and vesicle docking
  JOURNAL   Neuron 78 (6), 1012-1023 (2013)
   PUBMED   23791195
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC153887.6.
            
            On or before Apr 11, 2009 this sequence version replaced
            XM_909679.2, XM_903544.2, XM_359260.3.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK004654.1, ERR3363658.3413057.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849381, SAMN00849382
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-163               AC153887.6         60180-60342         c
            164-505             AC153887.6         58280-58621         c
            506-1150            AC153887.6         57479-58123         c
            1151-1365           AC153887.6         57085-57299         c
            1366-1492           AC153887.6         55709-55835         c
            1493-1653           AC153887.6         55337-55497         c
            1654-1879           AC153887.6         54468-54693         c
            1880-3288           AC153887.6         52881-54289         c
FEATURES             Location/Qualifiers
     source          1..3288
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="10"
                     /map="10 39.72 cM"
     gene            1..3288
                     /gene="Syde1"
                     /gene_synonym="1200008N06Rik; mSYD1A"
                     /note="synapse defective 1, Rho GTPase, homolog 1 (C.
                     elegans)"
                     /db_xref="GeneID:71709"
                     /db_xref="MGI:MGI:1918959"
     exon            1..163
                     /gene="Syde1"
                     /gene_synonym="1200008N06Rik; mSYD1A"
                     /inference="alignment:Splign:2.1.0"
     exon            164..505
                     /gene="Syde1"
                     /gene_synonym="1200008N06Rik; mSYD1A"
                     /inference="alignment:Splign:2.1.0"
     exon            506..1150
                     /gene="Syde1"
                     /gene_synonym="1200008N06Rik; mSYD1A"
                     /inference="alignment:Splign:2.1.0"
     exon            1151..1365
                     /gene="Syde1"
                     /gene_synonym="1200008N06Rik; mSYD1A"
                     /inference="alignment:Splign:2.1.0"
     exon            1366..1492
                     /gene="Syde1"
                     /gene_synonym="1200008N06Rik; mSYD1A"
                     /inference="alignment:Splign:2.1.0"
     exon            1493..1653
                     /gene="Syde1"
                     /gene_synonym="1200008N06Rik; mSYD1A"
                     /inference="alignment:Splign:2.1.0"
     exon            1654..1879
                     /gene="Syde1"
                     /gene_synonym="1200008N06Rik; mSYD1A"
                     /inference="alignment:Splign:2.1.0"
     exon            1880..3288
                     /gene="Syde1"
                     /gene_synonym="1200008N06Rik; mSYD1A"
                     /inference="alignment:Splign:2.1.0"
     regulatory      3269..3274
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Syde1"
                     /gene_synonym="1200008N06Rik; mSYD1A"
                     /note="hexamer: AATAAA"
     polyA_site      3288
                     /gene="Syde1"
                     /gene_synonym="1200008N06Rik; mSYD1A"
                     /note="major polyA site"
ORIGIN      
        1 gggggggggg gggtaggcgg gcggggcggg cggccgcagc cccggggcgc gcactcggcc
       61 ggccgcggcc caagcatggc cgagccgctg ctcaggaaga ccttctcccg cctgcggggt
      121 cgtgagaaac ttcctcgaaa aaagtcagaa gccaaggacc gcggccaccc agcccagcgc
      181 tcagagccca aacccccaga accagaacct cgtgtccttg aagggtctca ggctggagca
      241 gaggtaccac ccagccccga gacacctcga agccccactc ggggggccta cctgcaaagc
      301 ctggagccca gtagccgccg atgggtgcta ggaggggcta aaccaccaga ggagatctct
      361 ttggggccta ggacacctag cagtggggag cctgctggtg agatttggta caaccccatc
      421 cctgaagaag accccagacc acccgcacct gagcccttgg gatcacagct agcttcctct
      481 gagccagaag gccccaacat ccaaggtgca gcccctacca gcccccctac caaaacctcc
      541 cgtaccaagt ccccaggccc tgccaggcgc ctctcaatga agatgaaaaa gctgccagag
      601 ctccggcgcc gcctaagcct aagaagtact cgcacaggcc gggatagaga gaggaccgcc
      661 ccagcaggct ctgtcatcag ccgctatcac ctggacagca gtgtggggac tcctgggcag
      721 gcatcagtgg ctggagggtc taggagccca aggggtgggt acctcagcga tggtgattcg
      781 cctgagcgtc ctggaggacc accatcaccc actgccttcc ggccctatga agtgggtcca
      841 tcggcccgga ctcctccagc tgccctctgg gggcgtctca gcctgcacct gtatgggcta
      901 gggggtctgc gaccaagtcc cggggctact ccacgagatc tctgctgcct tctccaagtg
      961 gatggggtag ctcgggcccg cacagggcca cttcgaagcg gaccagactt cctgaggctg
     1021 gaccacacct tccacctaga gctggaggct gctcgtctgc tgcgggcctt ggtacttgca
     1081 tgggaccctg gtgtgaggcg gcaccggccc tgtgcccagg gcactgtgct attgccaacc
     1141 atctttcgag ggtgccaagc gcaacaactg gccgttcgac ttgaacccca gggacttctt
     1201 tacgccaagc taacattgtc ggaacagcaa gaagcccctg ccacagcaga gccccgtgtt
     1261 ttcgggctcc ctctgcagct tctggtagaa cgtgagcagt ccccaggcca ggtgcctctc
     1321 atcatccgaa agtgtgtggg gcagatcgaa tgccgagggc tgcgggtagt ggggctgtac
     1381 cgtctgtgtg gctcagcagc agtgaagaaa gagcttcgag atgcctttga gcaggacagt
     1441 gcggctgtgt gcctctctga agatgtgtac cctgatatca atgtcatcac aggcatcctc
     1501 aaggattatc ttcgagaact gcctactcca ctcatcaccc agcccctcta ccaggtggtg
     1561 ctggaagcca tggcccaagg acacccaagc agggcttccc tgggtcctga gggcaccaga
     1621 gggctcctca gatgcctgcc agatgtggag agggccaccc tgacgcttct tctggaccat
     1681 ctgcgccttg tctcttcctt ccacacccac aaccgcatga ccccgcagaa cttggcagtg
     1741 tgcttcggac cagtgttgct accagcgaga caaacaccct ctcggccccg gctccgtagc
     1801 tctggcccag gagtcaccag tgctgtggac ttcaagcgcc acattgaagt cctgcattac
     1861 ctgttacagt cttggccaga taccagacgg ccctcagata ccccagatgg cgcagtcgca
     1921 ccgtatttga ggcccaaaag acagccacct ctgcacttgc cgctggcggg cccagaagtg
     1981 gtgactcggc ctcggggccg cggaggcccc gaaagtcccc caagcaaccg ctatgcaggc
     2041 gactggagtg tgtgcggagg cgatttactg ccctgtgggc gggacttcct gtccgggcct
     2101 gactatgacc atgtgacagg cagcgacagt gaggaagatg atgatgagac tggagagccg
     2161 aggggcacta ccgacttcga agatgagttt gatgcaccct tcaacccaca cctgaatctc
     2221 aaagactttg atgccctcat cctggatctg gagagagaac tctccaagca gatcaatgtg
     2281 tgcctctgag ccctcaaagc aggggatgga ctctggttac taaggaattg cttcctggtt
     2341 gctaaggacc aggttctgat tactggtgac tgggttccaa gttactaagg ccctgatgac
     2401 ctaaaaggac ctgaccagag ttgctcagac tgagcacctg gttgctaggg agttgccaag
     2461 gggccagcct tccatgctaa aaaaatcatt cccaattcct agtgccattg tttggggccc
     2521 tagctgcaga aaccaggctc ttggcatttt cagcactgat gccatggccc ctctcccgag
     2581 cattggggct tctcttgctg ccagaaacag ttctgcttgc taggctggcc tctcttgcct
     2641 cccctttgca ggggaacacc aattactgtg agcatcaccc tggggtgtta aaacatccct
     2701 agtcaaccct cttgctgctg ccaaccaaac cagtattagc attgagcact acactctctc
     2761 tccctccctt gaagtatcta aaggcaatca tgggattcta cttaagggaa acagcaccag
     2821 actctgcctc tacctgtgaa aaggtggcct ggagcttaga gagaaacagg tgatttcccc
     2881 taaccctctc ttctagcaaa aactccgaga tgaatttcca accagcaaat ggagacagag
     2941 tcagaccttt cctttcccca gcagcccttc cccacccttg aaaaactgag cacttaactc
     3001 ctcccctttt ggagggaccc cacctgaggt atcaggctgg gggatctttg gtacggaaaa
     3061 tatttattgc ctccatgcat gtgtgtctgt gtgtgaggat tcgtgtgcac tggcctgtgt
     3121 ggaatggata tgtggaactc tttcagggac catagagtgg gataggattt tccattgcct
     3181 ggcaccccaa aatcttccaa tggtgacaga gttagggccc cttcctgtct cccacttctt
     3241 tccaccactt ccatctttgt gaacagtaaa taaaccagta tacacaga
//
