LOCUS       NM_001048145             837 bp    mRNA    linear   ROD 30-APR-2024
DEFINITION  Mus musculus synaptonemal complex central element protein 1 like
            (Syce1l), transcript variant 1, mRNA.
ACCESSION   NM_001048145
VERSION     NM_001048145.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 837)
  AUTHORS   Adams,D.J., Barlas,B., McIntyre,R.E., Salguero,I., van der
            Weyden,L., Barros,A., Vicente,J.R., Karimpour,N., Haider,A.,
            Ranzani,M., Turner,G., Thompson,N.A., Harle,V., Olvera-Leon,R.,
            Robles-Espinoza,C.D., Speak,A.O., Geisler,N., Weninger,W.J.,
            Geyer,S.H., Hewinson,J., Karp,N.A., Fu,B., Yang,F., Kozik,Z.,
            Choudhary,J., Yu,L., van Ruiten,M.S., Rowland,B.D., Lelliott,C.J.,
            Del Castillo Velasco-Herrera,M., Verstraten,R., Bruckner,L.,
            Henssen,A.G., Rooimans,M.A., de Lange,J., Mohun,T.J., Arends,M.J.,
            Kentistou,K.A., Coelho,P.A., Zhao,Y., Zecchini,H., Perry,J.R.B.,
            Jackson,S.P. and Balmus,G.
  CONSRTM   Sanger Mouse Genetics Project
  TITLE     Genetic determinants of micronucleus formation in vivo
  JOURNAL   Nature 627 (8002), 130-136 (2024)
   PUBMED   38355793
REFERENCE   2  (bases 1 to 837)
  AUTHORS   Koscielny,G., Yaikhom,G., Iyer,V., Meehan,T.F., Morgan,H.,
            Atienza-Herrero,J., Blake,A., Chen,C.K., Easty,R., Di Fenza,A.,
            Fiegel,T., Grifiths,M., Horne,A., Karp,N.A., Kurbatova,N.,
            Mason,J.C., Matthews,P., Oakley,D.J., Qazi,A., Regnart,J.,
            Retha,A., Santos,L.A., Sneddon,D.J., Warren,J., Westerberg,H.,
            Wilson,R.J., Melvin,D.G., Smedley,D., Brown,S.D., Flicek,P.,
            Skarnes,W.C., Mallon,A.M. and Parkinson,H.
  TITLE     The International Mouse Phenotyping Consortium Web Portal, a
            unified point of access for knockout mice and related phenotyping
            data
  JOURNAL   Nucleic Acids Res 42 (Database issue), D802-D809 (2014)
   PUBMED   24194600
REFERENCE   3  (bases 1 to 837)
  AUTHORS   Gu,S., Hu,J., Song,P., Gong,W. and Guo,M.
  TITLE     Identification of a new transcript specifically expressed in mouse
            spermatocytes: mmrp2
  JOURNAL   Mol Biol Rep 32 (4), 247-255 (2005)
   PUBMED   16328886
  REMARK    GeneRIF: An isoform of 4930481F22, lacking the 7th exon, encodes a
            putative 28.4 kDa protein expressed in spermatocytes, and may have
            an important role in meiosis.
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC125463.4 and BB616021.1.
            
            Transcript Variant: This variant (1) encodes the longest isoform
            (1).
            
            ##Evidence-Data-START##
            Transcript exon combination :: AY899935.1, BC141326.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849384 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-22                AC125463.4         114068-114089
            23-471              BB616021.1         3-451
            472-541             AC125463.4         125620-125689
            542-626             AC125463.4         125766-125850
            627-699             AC125463.4         125951-126023
            700-837             AC125463.4         126251-126388
FEATURES             Location/Qualifiers
     source          1..837
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="8"
                     /map="8 59.65 cM"
     gene            1..837
                     /gene="Syce1l"
                     /gene_synonym="4930481F22Rik; MMRP; mmrp2; PSESS"
                     /note="synaptonemal complex central element protein 1
                     like"
                     /db_xref="GeneID:668110"
                     /db_xref="MGI:MGI:1922247"
     exon            1..91
                     /gene="Syce1l"
                     /gene_synonym="4930481F22Rik; MMRP; mmrp2; PSESS"
                     /inference="alignment:Splign:2.1.0"
     exon            92..154
                     /gene="Syce1l"
                     /gene_synonym="4930481F22Rik; MMRP; mmrp2; PSESS"
                     /inference="alignment:Splign:2.1.0"
     exon            155..214
                     /gene="Syce1l"
                     /gene_synonym="4930481F22Rik; MMRP; mmrp2; PSESS"
                     /inference="alignment:Splign:2.1.0"
     exon            215..295
                     /gene="Syce1l"
                     /gene_synonym="4930481F22Rik; MMRP; mmrp2; PSESS"
                     /inference="alignment:Splign:2.1.0"
     exon            296..343
                     /gene="Syce1l"
                     /gene_synonym="4930481F22Rik; MMRP; mmrp2; PSESS"
                     /inference="alignment:Splign:2.1.0"
     exon            344..398
                     /gene="Syce1l"
                     /gene_synonym="4930481F22Rik; MMRP; mmrp2; PSESS"
                     /inference="alignment:Splign:2.1.0"
     exon            399..471
                     /gene="Syce1l"
                     /gene_synonym="4930481F22Rik; MMRP; mmrp2; PSESS"
                     /inference="alignment:Splign:2.1.0"
     exon            472..541
                     /gene="Syce1l"
                     /gene_synonym="4930481F22Rik; MMRP; mmrp2; PSESS"
                     /inference="alignment:Splign:2.1.0"
     exon            542..626
                     /gene="Syce1l"
                     /gene_synonym="4930481F22Rik; MMRP; mmrp2; PSESS"
                     /inference="alignment:Splign:2.1.0"
     exon            627..699
                     /gene="Syce1l"
                     /gene_synonym="4930481F22Rik; MMRP; mmrp2; PSESS"
                     /inference="alignment:Splign:2.1.0"
     exon            700..837
                     /gene="Syce1l"
                     /gene_synonym="4930481F22Rik; MMRP; mmrp2; PSESS"
                     /inference="alignment:Splign:2.1.0"
     regulatory      816..821
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Syce1l"
                     /gene_synonym="4930481F22Rik; MMRP; mmrp2; PSESS"
                     /note="hexamer: AATAAA"
     polyA_site      837
                     /gene="Syce1l"
                     /gene_synonym="4930481F22Rik; MMRP; mmrp2; PSESS"
                     /note="major polyA site"
ORIGIN      
        1 tgcgcagata ccccacgttg ggaaatggct gcggagctgg agcctttgat ggcggagtgg
       61 ctgggagctg agaaagctga agacacccga gggcaggccg catctctgaa tacgatggaa
      121 gacttgctgg agacagtgaa aaagctacag aaagagggaa gcctggagcc ccagattgag
      181 gacctgatcc accgcattaa tgagctgcag caaggtccag caaagaagag atccagtgag
      241 gagctgggag aggctcaagc actccaggaa gccatgcaca gggaactaga ctccttaaat
      301 gaagagagag tgcacctaga ggaggtcctg cgcaaaaagc aagaggctgt gtcaattctc
      361 aagaagcatc cccaagagag agacagtgac actccacact tggatgctca acaactggag
      421 gagaggctgg cggatctggc aaggcaacac aaggacctct gggagttcca tgtcctgcag
      481 cagcgactgg cccaggagat cagcacgatg gagcacagga aagatcagct tcttgcagag
      541 aggactctgc tgcgagccag gctggagaag gtggagcagc ggctgcagga ggccagagag
      601 acctgggaca gcccagggaa ctgtgggctg aagacagagc tggaggaatt ggaggggcag
      661 tcccagcgca gcccagaagc tcagaatgat aaaggggagg ctagccaaga ggaacagcat
      721 catttggaga catcagaaga gttgccaagg acaggaacgc tctgctaaac cacaaggacc
      781 taccagtgct cacattcctt caaggactac caagaaataa agatgattcc aagagtc
//
