LOCUS       NM_025870               1846 bp    mRNA    linear   ROD 17-DEC-2024
DEFINITION  Mus musculus SWIM type zinc finger 7 associated protein 1 (Swsap1),
            mRNA.
ACCESSION   NM_025870 XM_150151 XM_913186
VERSION     NM_025870.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 1846)
  AUTHORS   Zainu,A., Dupaigne,P., Bouchouika,S., Cau,J., Clement,J.A.J.,
            Auffret,P., Ropars,V., Charbonnier,J.B., de Massy,B., Mercier,R.,
            Kumar,R. and Baudat,F.
  TITLE     FIGNL1-FIRRM is essential for meiotic recombination and prevents
            DNA damage-independent RAD51 and DMC1 loading
  JOURNAL   Nat Commun 15 (1), 7015 (2024)
   PUBMED   39147779
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1846)
  AUTHORS   Ito,M., Furukohri,A., Matsuzaki,K., Fujita,Y., Toyoda,A. and
            Shinohara,A.
  TITLE     FIGNL1 AAA+ ATPase remodels RAD51 and DMC1 filaments in pre-meiotic
            DNA replication and meiotic recombination
  JOURNAL   Nat Commun 14 (1), 6857 (2023)
   PUBMED   37891173
  REMARK    Publication Status: Online-Only
REFERENCE   3  (bases 1 to 1846)
  AUTHORS   Prakash,R., Sandoval,T., Morati,F., Zagelbaum,J.A., Lim,P.X.,
            White,T., Taylor,B., Wang,R., Desclos,E.C.B., Sullivan,M.R.,
            Rein,H.L., Bernstein,K.A., Krawczyk,P.M., Gautier,J., Modesti,M.,
            Vanoli,F. and Jasin,M.
  TITLE     Distinct pathways of homologous recombination controlled by the
            SWS1-SWSAP1-SPIDR complex
  JOURNAL   Nat Commun 12 (1), 4255 (2021)
   PUBMED   34253720
  REMARK    GeneRIF: Distinct pathways of homologous recombination controlled
            by the SWS1-SWSAP1-SPIDR complex.
            Publication Status: Online-Only
REFERENCE   4  (bases 1 to 1846)
  AUTHORS   Matsuzaki,K., Kondo,S., Ishikawa,T. and Shinohara,A.
  TITLE     Human RAD51 paralogue SWSAP1 fosters RAD51 filament by regulating
            the anti-recombinase FIGNL1 AAA+ ATPase
  JOURNAL   Nat Commun 10 (1), 1407 (2019)
   PUBMED   30926776
  REMARK    Publication Status: Online-Only
REFERENCE   5  (bases 1 to 1846)
  AUTHORS   Abreu,C.M., Prakash,R., Romanienko,P.J., Roig,I., Keeney,S. and
            Jasin,M.
  TITLE     Shu complex SWS1-SWSAP1 promotes early steps in mouse meiotic
            recombination
  JOURNAL   Nat Commun 9 (1), 3961 (2018)
   PUBMED   30305635
  REMARK    GeneRIF: These results demonstrate an essential role for
            SWS1-SWSAP1 in meiotic progression and emphasize the complex
            interplay of factors that ensure recombinase function.
            Publication Status: Online-Only
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC163623.5.
            
            On or before Jul 8, 2009 this sequence version replaced
            XM_913186.3, XM_150151.7.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC019749.1, AK009864.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374, SAMN00849375
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-252               AC163623.5         21895-22146
            253-1846            AC163623.5         22819-24412
FEATURES             Location/Qualifiers
     source          1..1846
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="9"
                     /map="9 7.93 cM"
     gene            1..1846
                     /gene="Swsap1"
                     /gene_synonym="2310047B19Rik"
                     /note="SWIM type zinc finger 7 associated protein 1"
                     /db_xref="GeneID:66962"
                     /db_xref="MGI:MGI:1914212"
     exon            1..252
                     /gene="Swsap1"
                     /gene_synonym="2310047B19Rik"
                     /inference="alignment:Splign:2.1.0"
     CDS             10..846
                     /gene="Swsap1"
                     /gene_synonym="2310047B19Rik"
                     /codon_start=1
                     /product="ATPase SWSAP1"
                     /protein_id="NP_080146.1"
                     /db_xref="CCDS:CCDS52739.1"
                     /db_xref="GeneID:66962"
                     /db_xref="MGI:MGI:1914212"
                     /translation="MAEALRRVLNAGCAARPGEDGAAGPPLLLLGAPRSAQTSLLFAA
                     ALEAAGEGRGSVLFVTRRPLQSLPLSTPTAREHWRLQKVRFQYPSSIQELLQLLASAH
                     EAPAPTPSLLLLDGLEEYLAEDPSAQEAAYLAALLLDTAAFFSHRLGANGSCGLVVAL
                     ETQKEAEADAPHLPLLKRYFPAQCWLQPDALGLGQHCCLRASLELGKLSPRTEWSVSF
                     LPCGEMKVTPWLAQASKLSPEKKDSSAGSQSLTLGCDNLPGPGSPLDGILTSETGADS
                     KT"
     exon            253..1846
                     /gene="Swsap1"
                     /gene_synonym="2310047B19Rik"
                     /inference="alignment:Splign:2.1.0"
     regulatory      1818..1823
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Swsap1"
                     /gene_synonym="2310047B19Rik"
                     /note="hexamer: AGTAAA"
     polyA_site      1840
                     /gene="Swsap1"
                     /gene_synonym="2310047B19Rik"
                     /note="major polyA site"
ORIGIN      
        1 actcagcaaa tggcggaggc gctgaggcgg gtgctgaatg ccggctgcgc ggcaaggcca
       61 ggagaggatg gcgctgccgg gccgccattg ctgttgctcg gcgctccgcg ctctgcgcag
      121 acgtcgctgc tgtttgcagc cgcccttgag gcggcagggg aaggccgcgg gtccgtcctc
      181 ttcgtgacgc gaaggcccct tcagagcctg ccgctcagta cacccacagc gcgagagcat
      241 tggcggctcc agaaggttcg tttccagtac ccatcctcaa ttcaagagct tctccagctg
      301 ctggcctctg cccatgaggc cccagcaccg accccatccc ttctactcct ggacggcctg
      361 gaagaatatc tcgcagagga tcccagtgcc caggaagccg cctacttggc tgcattgctt
      421 ctggatactg ctgccttctt tagccaccgt cttggagcca atggcagttg tgggcttgtt
      481 gtggcccttg aaacccagaa agaagcagag gccgatgccc cacatctgcc attacttaag
      541 cgatattttc ctgcacagtg ctggttgcag ccagatgccc taggcttggg acagcattgc
      601 tgccttcgag ccagcctaga gttgggcaaa ctgagcccta ggacagagtg gtcagtgagt
      661 ttcttaccct gtggagagat gaaggtcacc ccatggcttg cccaggcttc taagctcagc
      721 ccagagaaga aagattcaag tgctggaagc cagtccttaa ctttgggatg tgacaacctc
      781 cctggtcctg ggtctccctt ggatgggata cttacttcag agacaggtgc agattcaaag
      841 acctgaaaaa tgtagatttt ctgtttataa actagcatta ttgtcatcag ggctggcaag
      901 atcccttggc aacaggcacg gtaatttgac tgattcccgg gaccctcgtg gtagaaagaa
      961 ctgactcctg caagttgtct tctgacctcc acatttgggt ggaaacacac agccctccac
     1021 actaatgata aattagtaat gagaccttta agataagtaa ggccagcaga gccttccttt
     1081 gcccactcac cgttgtcaat gagattcagc catgtttcct agtgcaggtc tttttatctg
     1141 ctgcattttt tatccaggca ggctctctaa gtcaggccag cctcaaacta gatccttagc
     1201 tgaggctgtc cttgaactcc tgatcctaca gcctcatctc ttgagggcgg ggcctatcga
     1261 gtatgctcct gttcttggct cctcttgcac attccttggg tgcccgtatc ccagttacct
     1321 ctatgtgttg gcttacgtag tcatccacat gaccttgcac atgtatttag ggtgtacagt
     1381 tcggagtgga tccactccac atagagtatg cacacattta gcttgcttag gacaggccag
     1441 cttagggagg gagaggtggg agatcacaag tgcaaggcta tccttggcta cataaggtgt
     1501 gggaagcgat gctggctcac actggaccct gtctccaaaa cccaaagtgg gccaggtgtg
     1561 atggcacagg cctttagtcc tagcacagag gcaggtagat ctgtacgtat gtgtttaaga
     1621 acagcctgct ctacgtggca agttccagac caaccagggc tacatagacc ctgcctcaaa
     1681 gacaaaaaca aactagggag ctggaggaga gccccgtggt tgggaatcct ctcactgtga
     1741 cagccttggt tctctatctg tctgagtcat ttccactccc gtgaaaaacc ctcacccata
     1801 ttcctgaaca taagcctagt aaagctctat tggttcacca cattgg
//
