LOCUS       NM_177200               2382 bp    mRNA    linear   ROD 30-APR-2024
DEFINITION  Mus musculus SV2 related protein homolog (rat)-like (Svopl), mRNA.
ACCESSION   NM_177200
VERSION     NM_177200.4
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 2382)
  AUTHORS   Adams,D.J., Barlas,B., McIntyre,R.E., Salguero,I., van der
            Weyden,L., Barros,A., Vicente,J.R., Karimpour,N., Haider,A.,
            Ranzani,M., Turner,G., Thompson,N.A., Harle,V., Olvera-Leon,R.,
            Robles-Espinoza,C.D., Speak,A.O., Geisler,N., Weninger,W.J.,
            Geyer,S.H., Hewinson,J., Karp,N.A., Fu,B., Yang,F., Kozik,Z.,
            Choudhary,J., Yu,L., van Ruiten,M.S., Rowland,B.D., Lelliott,C.J.,
            Del Castillo Velasco-Herrera,M., Verstraten,R., Bruckner,L.,
            Henssen,A.G., Rooimans,M.A., de Lange,J., Mohun,T.J., Arends,M.J.,
            Kentistou,K.A., Coelho,P.A., Zhao,Y., Zecchini,H., Perry,J.R.B.,
            Jackson,S.P. and Balmus,G.
  CONSRTM   Sanger Mouse Genetics Project
  TITLE     Genetic determinants of micronucleus formation in vivo
  JOURNAL   Nature 627 (8002), 130-136 (2024)
   PUBMED   38355793
REFERENCE   2  (bases 1 to 2382)
  AUTHORS   Gerber,S.D., Amann,R., Wyder,S. and Trueb,B.
  TITLE     Comparison of the gene expression profiles from normal and Fgfrl1
            deficient mouse kidneys reveals downstream targets of Fgfrl1
            signaling
  JOURNAL   PLoS One 7 (3), e33457 (2012)
   PUBMED   22432025
REFERENCE   3  (bases 1 to 2382)
  AUTHORS   Georgas,K.M., Chiu,H.S., Lesieur,E., Rumballe,B.A. and Little,M.H.
  TITLE     Expression of metanephric nephron-patterning genes in
            differentiating mesonephric tubules
  JOURNAL   Dev Dyn 240 (6), 1600-1612 (2011)
   PUBMED   21491542
REFERENCE   4  (bases 1 to 2382)
  AUTHORS   Georgas,K., Rumballe,B., Valerius,M.T., Chiu,H.S.,
            Thiagarajan,R.D., Lesieur,E., Aronow,B.J., Brunskill,E.W.,
            Combes,A.N., Tang,D., Taylor,D., Grimmond,S.M., Potter,S.S.,
            McMahon,A.P. and Little,M.H.
  TITLE     Analysis of early nephron patterning reveals a role for distal RV
            proliferation in fusion to the ureteric tip via a cap
            mesenchyme-derived connecting segment
  JOURNAL   Dev Biol 332 (2), 273-286 (2009)
   PUBMED   19501082
REFERENCE   5  (bases 1 to 2382)
  AUTHORS   Jacobsson,J.A., Haitina,T., Lindblom,J. and Fredriksson,R.
  TITLE     Identification of six putative human transporters with structural
            similarity to the drug transporter SLC22 family
  JOURNAL   Genomics 90 (5), 595-609 (2007)
   PUBMED   17714910
REFERENCE   6  (bases 1 to 2382)
  AUTHORS   Muhlfriedel,S., Kirsch,F., Gruss,P., Chowdhury,K. and Stoykova,A.
  TITLE     Novel genes differentially expressed in cortical regions during
            late neurogenesis
  JOURNAL   Eur J Neurosci 26 (1), 33-50 (2007)
   PUBMED   17614941
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            BB627230.1 and BC058741.1.
            
            On May 30, 2007 this sequence version replaced NM_177200.3.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC058741.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMN00849374,
                                           SAMN00849375 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-17                BB627230.1         2-18
            18-2382             BC058741.1         1-2365
FEATURES             Location/Qualifiers
     source          1..2382
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="6"
                     /map="6 17.34 cM"
     gene            1..2382
                     /gene="Svopl"
                     /gene_synonym="9430071P14Rik"
                     /note="SV2 related protein homolog (rat)-like"
                     /db_xref="GeneID:320590"
                     /db_xref="MGI:MGI:2444335"
     exon            1..79
                     /gene="Svopl"
                     /gene_synonym="9430071P14Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            80..190
                     /gene="Svopl"
                     /gene_synonym="9430071P14Rik"
                     /inference="alignment:Splign:2.1.0"
     CDS             109..1593
                     /gene="Svopl"
                     /gene_synonym="9430071P14Rik"
                     /note="SVOP-like protein"
                     /codon_start=1
                     /product="putative transporter SVOPL"
                     /protein_id="NP_796174.2"
                     /db_xref="CCDS:CCDS20009.2"
                     /db_xref="GeneID:320590"
                     /db_xref="MGI:MGI:2444335"
                     /translation="MAAKQTEPVTIISLRKLSQAAPEPQQKETKTFTVEDAVETIGFG
                     RFHIALFLIMGSTGVVEAMEIMLIAVVSPVIRCEWQLENWQVAFVTTMVFFGYMVSSI
                     LFGLLADRYGRWKILLLSFLWGAYFSLLTSFSPSYIWFVFLRTMVGCGVSGHAQGLII
                     KTEFLPTKYRGYMLPLSQVFWLAGSLLIISMASVVIPTIGWRWLIRIASIPGIILIMA
                     FKFIPESARFNVSTGNTQAALNTLESIAKMNRSVMPEGQLVEPILEKRGRFADLLDSK
                     YLRTTLQIWIIWLGISFAYYGVILASAELLERDLVCGSKSESEPEVVETTGDSGEGLS
                     PCYCHIFAPSDYRTMIISTLGEIALNPLNILGINFLGRRLSLSITMGCTALFFLLLNI
                     CTSSAGLIGFLFMLRALVAANFNTIYIYTAEVYPTPMRAIGMGTSGSLCRIGAMVAPF
                     ISQVLMSASFLGALCLFSSVCVVCAISAFTLPIETKGRALQQIK"
     exon            191..282
                     /gene="Svopl"
                     /gene_synonym="9430071P14Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            283..381
                     /gene="Svopl"
                     /gene_synonym="9430071P14Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            382..453
                     /gene="Svopl"
                     /gene_synonym="9430071P14Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            454..578
                     /gene="Svopl"
                     /gene_synonym="9430071P14Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            579..642
                     /gene="Svopl"
                     /gene_synonym="9430071P14Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            643..768
                     /gene="Svopl"
                     /gene_synonym="9430071P14Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            769..897
                     /gene="Svopl"
                     /gene_synonym="9430071P14Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            898..971
                     /gene="Svopl"
                     /gene_synonym="9430071P14Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            972..1183
                     /gene="Svopl"
                     /gene_synonym="9430071P14Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1184..1295
                     /gene="Svopl"
                     /gene_synonym="9430071P14Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1296..1377
                     /gene="Svopl"
                     /gene_synonym="9430071P14Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1378..1467
                     /gene="Svopl"
                     /gene_synonym="9430071P14Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1468..1581
                     /gene="Svopl"
                     /gene_synonym="9430071P14Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1582..2366
                     /gene="Svopl"
                     /gene_synonym="9430071P14Rik"
                     /inference="alignment:Splign:2.1.0"
     regulatory      2345..2350
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Svopl"
                     /gene_synonym="9430071P14Rik"
                     /note="hexamer: AATAAA"
     polyA_site      2366
                     /gene="Svopl"
                     /gene_synonym="9430071P14Rik"
                     /note="major polyA site"
ORIGIN      
        1 agtgctgcca gagggctgtg gggagacagc cagccagcgc acagggacct ggaatcggaa
       61 agttccaagg aacacagagg ggagctgtgt ggggaatcag tgacctagat ggcagccaag
      121 cagacagagc ccgtgacaat catcagcctt cggaaactga gccaggcagc cccagaaccg
      181 cagcagaaag agaccaagac attcacggtg gaggatgcgg tggagaccat cggcttcggg
      241 cgcttccaca ttgcactctt cctaatcatg ggcagcaccg gggttgtgga ggccatggag
      301 atcatgttaa tagcagttgt gtctcctgtt atccgatgtg aatggcagct ggagaactgg
      361 caggtggcat ttgtcaccac gatggtgttt tttggctaca tggtatccag catccttttt
      421 ggtctcctgg ctgacagata tggccgctgg aagattttgc tgctctcgtt cctgtgggga
      481 gcctacttct ccttactgac ctctttctcc ccctcctaca tctggtttgt ctttctgcgg
      541 acgatggtag gctgtggagt gtctggccat gctcaagggt taatcataaa gactgaattt
      601 ttgcccacaa aataccgagg ctacatgctg cccttgtcgc aggttttctg gcttgctggc
      661 tccctgctca tcatcagcat ggcctctgtg gtcatcccca ccattgggtg gcgttggctc
      721 atccgcatcg cctccatccc tggcatcatc ctcatcatgg ccttcaagtt tatccctgaa
      781 tctgctcgct tcaacgtctc cactgggaac acccaggctg cactgaacac cctagagagc
      841 attgccaaga tgaaccgctc agtcatgcca gagggacagc tggtggagcc catcctggag
      901 aaaagaggaa gatttgcaga tctactagat tctaaatacc ttcggaccac attacagatc
      961 tggatcatat ggctgggaat ttcttttgcc tattatgggg tcatcctggc cagcgctgag
     1021 ttgctcgagc gggatctggt ctgcggttca aagtcggagt cagaaccgga ggtggtggag
     1081 accacagggg actcagggga gggtctgagt ccctgctatt gccacatatt tgcaccctct
     1141 gactacagga ccatgatcat cagcaccctc ggggaaatcg ctttgaaccc tttaaacatc
     1201 ctgggcatca atttcctggg cagacggctg agcctgtcga tcaccatggg atgcacggcg
     1261 ctgtttttcc ttctcctcaa tatctgcact tcaagtgcag gcctcattgg cttcctcttc
     1321 atgctgaggg ccctggtggc agcaaacttc aacaccatct acatttacac tgctgaggtc
     1381 tacccaaccc cgatgcgtgc tatagggatg ggaaccagcg gctccctgtg tcgcattgga
     1441 gcaatggtag ctccatttat atcccaggtc ctaatgagtg cctcattctt gggagccctg
     1501 tgtcttttct catctgtctg tgttgtgtgc gctatttctg catttactct tcccattgag
     1561 accaaaggac gcgctttgca gcaaattaaa tgaggacctg caatactaat gtggagaaaa
     1621 gtatatttga tcttcactga gttattattt ttaatgggtt tatttctgca cgtggtaatt
     1681 aagaaagcaa gttatattaa ggcaatgaag gcacacacca agaatgcagt ggggttcttc
     1741 cttagggaac aatatataca agcctcttat aggatatcct tagacacatg tggttcatgc
     1801 ctgaaatccc agcatataca ggttgagggg gcaggatgac caggagttca atatcctcct
     1861 cagttgtaaa gttagtttga ggctagcctg ggctacatga gatcttgtct acaaacatca
     1921 aaagcctacc tccaaaccaa taaaccctga gattgaatgg ggccaggaga aggtaagggt
     1981 ggaggataca cttctcattt ggtatcaaca actttttttt tgtttttgtt ttttgagata
     2041 gggtttctct gtatatccct ggaactcact ttgtagacca ggagggcctc gaactcagaa
     2101 atccacctgc ctctgcctcc agagtgctgg gattaaaggt gtgcaccatc atgcccggcg
     2161 gtatcaacaa ctatttaacc ttagacaaac acttggcatt ggcccatatg gtctgtggct
     2221 gaaggacaga gattctgtag ctaaggcaag aaattagact gattttcact gaatttaaat
     2281 catggtcttg atagtttaca aaaaaccccc actttattct gtacatagct agcaagaagc
     2341 tgggaataaa gttacttttc tccttaaaaa aaaaaaaaaa aa
//
