LOCUS       NM_178682               5025 bp    mRNA    linear   ROD 30-APR-2024
DEFINITION  Mus musculus sushi domain containing 6 (Susd6), transcript variant
            2, mRNA.
ACCESSION   NM_178682 XM_990926 XM_990948
VERSION     NM_178682.4
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 5025)
  AUTHORS   Adams,D.J., Barlas,B., McIntyre,R.E., Salguero,I., van der
            Weyden,L., Barros,A., Vicente,J.R., Karimpour,N., Haider,A.,
            Ranzani,M., Turner,G., Thompson,N.A., Harle,V., Olvera-Leon,R.,
            Robles-Espinoza,C.D., Speak,A.O., Geisler,N., Weninger,W.J.,
            Geyer,S.H., Hewinson,J., Karp,N.A., Fu,B., Yang,F., Kozik,Z.,
            Choudhary,J., Yu,L., van Ruiten,M.S., Rowland,B.D., Lelliott,C.J.,
            Del Castillo Velasco-Herrera,M., Verstraten,R., Bruckner,L.,
            Henssen,A.G., Rooimans,M.A., de Lange,J., Mohun,T.J., Arends,M.J.,
            Kentistou,K.A., Coelho,P.A., Zhao,Y., Zecchini,H., Perry,J.R.B.,
            Jackson,S.P. and Balmus,G.
  CONSRTM   Sanger Mouse Genetics Project
  TITLE     Genetic determinants of micronucleus formation in vivo
  JOURNAL   Nature 627 (8002), 130-136 (2024)
   PUBMED   38355793
REFERENCE   2  (bases 1 to 5025)
  AUTHORS   Polato,F., Rusconi,P., Zangrossi,S., Morelli,F., Boeri,M., Musi,A.,
            Marchini,S., Castiglioni,V., Scanziani,E., Torri,V. and Broggini,M.
  TITLE     DRAGO (KIAA0247), a new DNA damage-responsive, p53-inducible gene
            that cooperates with p53 as oncosuppressor. [Corrected]
  JOURNAL   J Natl Cancer Inst 106 (4), dju053 (2014)
   PUBMED   24652652
  REMARK    Erratum:[J Natl Cancer Inst. 2014 Aug;106(8):dju199
            doi:10.1093/jnci/dju199]
REFERENCE   3  (bases 1 to 5025)
  AUTHORS   Koscielny,G., Yaikhom,G., Iyer,V., Meehan,T.F., Morgan,H.,
            Atienza-Herrero,J., Blake,A., Chen,C.K., Easty,R., Di Fenza,A.,
            Fiegel,T., Grifiths,M., Horne,A., Karp,N.A., Kurbatova,N.,
            Mason,J.C., Matthews,P., Oakley,D.J., Qazi,A., Regnart,J.,
            Retha,A., Santos,L.A., Sneddon,D.J., Warren,J., Westerberg,H.,
            Wilson,R.J., Melvin,D.G., Smedley,D., Brown,S.D., Flicek,P.,
            Skarnes,W.C., Mallon,A.M. and Parkinson,H.
  TITLE     The International Mouse Phenotyping Consortium Web Portal, a
            unified point of access for knockout mice and related phenotyping
            data
  JOURNAL   Nucleic Acids Res 42 (Database issue), D802-D809 (2014)
   PUBMED   24194600
REFERENCE   4  (bases 1 to 5025)
  AUTHORS   Nishimura,M., Yokoi,N., Miki,T., Horikawa,Y., Yoshioka,H.,
            Takeda,J., Ohara,O. and Seino,S.
  TITLE     Construction of a multi-functional cDNA library specific for mouse
            pancreatic islets and its application to microarray
  JOURNAL   DNA Res 11 (5), 315-323 (2004)
   PUBMED   15747579
REFERENCE   5  (bases 1 to 5025)
  AUTHORS   Okazaki,N., Kikuno,R., Ohara,R., Inamoto,S., Koseki,H., Hiraoka,S.,
            Saga,Y., Nagase,T., Ohara,O. and Koga,H.
  TITLE     Prediction of the coding sequences of mouse homologues of KIAA
            gene: III. the complete nucleotide sequences of 500 mouse
            KIAA-homologous cDNAs identified by screening of terminal sequences
            of cDNA clones randomly sampled from size-fractionated libraries
  JOURNAL   DNA Res 10 (4), 167-180 (2003)
   PUBMED   14621295
REFERENCE   6  (bases 1 to 5025)
  AUTHORS   Stryke,D., Kawamoto,M., Huang,C.C., Johns,S.J., King,L.A.,
            Harper,C.A., Meng,E.C., Lee,R.E., Yee,A., L'Italien,L.,
            Chuang,P.T., Young,S.G., Skarnes,W.C., Babbitt,P.C. and Ferrin,T.E.
  TITLE     BayGenomics: a resource of insertional mutations in mouse embryonic
            stem cells
  JOURNAL   Nucleic Acids Res 31 (1), 278-281 (2003)
   PUBMED   12520002
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AK161132.1, AK152500.1 and BP762731.1.
            
            On Jun 4, 2011 this sequence version replaced NM_178682.3.
            
            Transcript Variant: This variant (2) lacks an alternate in-frame
            exon compared to variant 1. The resulting isoform (2) has the same
            N- and C-termini but is shorter compared to isoform 1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC040401.1, AK164823.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374, SAMN00849375
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-3421              AK161132.1         3-3423
            3422-5001           AK152500.1         1583-3162
            5002-5025           BP762731.1         29-52               c
FEATURES             Location/Qualifiers
     source          1..5025
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="12"
                     /map="12 37.05 cM"
     gene            1..5025
                     /gene="Susd6"
                     /gene_synonym="4933426M11Rik; mKIAA0247"
                     /note="sushi domain containing 6"
                     /db_xref="GeneID:217684"
                     /db_xref="MGI:MGI:2444661"
     exon            1..284
                     /gene="Susd6"
                     /gene_synonym="4933426M11Rik; mKIAA0247"
                     /inference="alignment:Splign:2.1.0"
     exon            285..502
                     /gene="Susd6"
                     /gene_synonym="4933426M11Rik; mKIAA0247"
                     /inference="alignment:Splign:2.1.0"
     exon            503..700
                     /gene="Susd6"
                     /gene_synonym="4933426M11Rik; mKIAA0247"
                     /inference="alignment:Splign:2.1.0"
     exon            701..836
                     /gene="Susd6"
                     /gene_synonym="4933426M11Rik; mKIAA0247"
                     /inference="alignment:Splign:2.1.0"
     exon            837..1264
                     /gene="Susd6"
                     /gene_synonym="4933426M11Rik; mKIAA0247"
                     /inference="alignment:Splign:2.1.0"
     exon            1265..5002
                     /gene="Susd6"
                     /gene_synonym="4933426M11Rik; mKIAA0247"
                     /inference="alignment:Splign:2.1.0"
     regulatory      4981..4986
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Susd6"
                     /gene_synonym="4933426M11Rik; mKIAA0247"
                     /note="hexamer: AATAAA"
     polyA_site      5002
                     /gene="Susd6"
                     /gene_synonym="4933426M11Rik; mKIAA0247"
                     /note="major polyA site"
ORIGIN      
        1 ggggcctccc ccgcccgcgt cgtacagctg ggccagtgac gctggcgcag ccgtcgccac
       61 cgccgccgcg ttccatcctc aggagccggc caccgctcgc gtcctcgtcc tcgtcctcct
      121 ccttcgtcag cgcccggccg cgtgagccag accagggcac gcgaggcgtc gcgggggacc
      181 cgacagggag tgcaggcagg cgggcgcgct cagcggcgga gcgggttcgg cgacgcggga
      241 gctgctagcg ccccctttcc cggaggtctc ggcgccgctc ccgggtgaag ctactcctgg
      301 ctggctttag gattcttctg gattttaaag tcgttctttt taaaaataaa taaataaata
      361 aaaacctccg acggataaaa gatgtgccat ggcaagatag caccaaagag cagctcagag
      421 tttgttgtga cttctgtggg gcatggagtg tttcttcaac tggtgatcct ttgcgctctg
      481 ctgggagatg gattagcctc tgtgtgtcct ctgcccccag agccagagaa tggtggctac
      541 atttgccacc cccggccttg taaagacccc ttgacagcag gcagtgtcat cgagtacctg
      601 tgtgcagaag gctacatgtt gaagggtgac tacaaatacc tgacctgcaa aaatggcgag
      661 tggacgccag ccatggaggt tagctgtcat ctcattgaag acaaagaaac ccatgcactt
      721 ggggtccctg cgctgtccat agtggcttcc actgccagct ctgtggcact cattctcctc
      781 ctcgtggtgc tgtttgtact gctgcagcca aagctgaagt ctttccatca tagcaggcgt
      841 gaacaggggg tttctgggga tcaagtctcc attatggtgg atggtgtcca ggttgcacta
      901 ccttcatatg aggaagctgt gtatggaagt tctggtcact gcatgccacc agctgatccc
      961 agagtacaga ttgttctgtc ggaagggtct gcacctagtg ggaggaacat gccaagggaa
     1021 cagcagctgc aaggccagga ggcctgctct tctgcaggtg gagaggacga ggccccgggc
     1081 cattctgggc tgtgtgaagc ctggggttcc cagggctcag agactgtgat ggtgcatcag
     1141 gcaaccacat cttcctgggt ggccggctca gggagcagcc ggccgacaca caaagacact
     1201 gcagattcag aaaacagtga catacaaagc cttttatccc tcacatcaga ggagtacaca
     1261 gatgatatcc cactattgaa agaagcatga gggctgccgc tggcctctgt cctctctgcc
     1321 cgtcctctct cttcctgtgg gtttgagtac catgtcctct ctagctgccc cacctggatg
     1381 cctgaactgc cacctgtgta tctctgtgta cctgagagcc tgcaggccac ctcgatggat
     1441 actcaagaaa gattctcacc atctgcccac tggacagctg gaggacctgg ccctttgcct
     1501 ggcccagcct tcccatctgt ctgtcaggga tgtgtctgaa tgcgctggat tgaacctccc
     1561 cttcccctca gcctctgggt cccttccagc cagctcttgg tggcagcccc gcagccatga
     1621 gggcctgagc actgctgtgt ttacttgtgc cttccccacc ctgtccaggt tccctgttgt
     1681 gcaggtgggt tgctatccac aggccttagt ggctactgcc acctgtaccc gggggccagg
     1741 cctgaggctg cagaaacaga ttgaagagta gtaaggcact caaagcagga atagctcatg
     1801 ctgggtccag aatgtgggtc cctgagcttg ccctgtgtgt tgacactgat ggcggcatct
     1861 tccttaactg aggacagagg tttgggaagt catgccaaag ccacccagca ctcgctgacc
     1921 agctctcgtg caggttcctg gctcttttga gagtttctaa gaagcaccca gaagacctgt
     1981 gggaaggagg aaaggtgtca gataatgatt gtcttcctaa tactcaagtt ctcacttcct
     2041 gcttccagca ctggctgcct tggccttggt ttctgttcct ggataagggg aagttgcatg
     2101 ctgtttcctg gactttgtcc taggtagctc tggcttcctt gcagcccaca gaatcctgag
     2161 atttgctgag atgccaacaa aagctcatct ggcttttggc agtctgggca agttgcccct
     2221 ttttaggttt gtggtgatgg aggggaggct gataggtaca gaccaagtcc ccggtggctg
     2281 caggcagctc cggcaggtcc tgaggatcct cctcaccacg gtcatgtgcc ttagtaactg
     2341 tgcccaggaa gtggcctgct gtgccactgc tcccactctg ttctctcctc cctgcctttc
     2401 cacacgtcat cgttgaaaag ccactcctta ttttccctgc cagctgatag agatggtggg
     2461 cacccagaaa cctgagatac aggtcctggg agtgggaacg tactagccta gaagaaatgc
     2521 tccagccatt tccagcctcc tattgccctg tactgaatgc tgacaagtct gggtaactga
     2581 gccccaccag gcttctacca tcttgagaag acagatgtgg tatcaaggaa tgtgtgtgtt
     2641 tttttttttt cttctcatct ttcttccttt cttccttttc ttcctcttct tcttcttctt
     2701 ctttctcctc ctcaagcctt ggggctggga aactcttcag agccagtcct ggactgaacc
     2761 tgtgatgagc ctctctgggg tggtaaaaat aataaaagcc cagtatattt atagttcctg
     2821 acacaacagg gttagctcca ggcatctgtg gcctcaaaaa taggggaata acttctccta
     2881 gccaactgcc tccattcaca atgcacttta gtccctgtca tgcctggctt cctgacaccc
     2941 tcatctcctc tcagggtaag ggcagtgtct gctgtccctg ctggccactc ccacactaac
     3001 ccaggaggcc agtccagtgt gcccagtgtc cagacaagta tggttggctg aggaatgagc
     3061 tggaaaaggt gcttagacta gacgactaga acacccctag caggtgctgc cataggctta
     3121 cctgggggtg ggttccaagg ccccaagcca cctcaccatg gcgcttcttc agcttcagtg
     3181 gtgtccaccc ccctcaaggg agaactgggc aaggaacacg agtcttctga atgggcctgc
     3241 ctcttttgct tactgctctt ctaaaatctg agttctgttt tagttctgtg tcgttaccct
     3301 gggcttttgc cccttacaga ttgcacttct ttggcttatt atttagcctt gtaggtgcct
     3361 ggctttggcc ttgggaaaaa gaacctcctg gtgcctcgtt ttctctcagc attcattagc
     3421 ctgctgtggg gaaatcacag gcccaggctt gcctaactga aggataaagg gcacccgtgt
     3481 tccccatcct cttgtcacag gcttttagaa ggtctgttct tgaggtctca cacctgttgc
     3541 tggcatctgt ggcttcttcc tgcattgttt tcttctacag caatttctta accattagcc
     3601 atgtgctgtg gtttctgggg catctgggct ttgtccatta cagacggact ggggacttaa
     3661 ttgccttgaa gtggagcctg ctagaaacag ggtcagtggc aggtggcagg cggatgggca
     3721 ggaagaagct tcgagcaagt gggaagaaac taagcagcct actttactgg gctcacctcc
     3781 agggacatcc tgagacttgt ccaaaagagg cagtcagcac caaaggactt ttacacaggg
     3841 ttttttggtt tgggagatgt ttttgctttt tcatacttac actgactcaa tgcaggtttt
     3901 atatcctggt gacttgctgt cacattctat cagttttcaa gggccagaat gatgaaataa
     3961 ataaatagaa aattccgtcc ttccatgcct tagtttaaca ggtgagctct acctgcccag
     4021 ttctgtgttt tgtgtgagaa ctgtgaaatg ggcggagtcc tgaccacttt gtgggttcgt
     4081 ttggttttat aaggcatttc aatgtacatt cttcaagcac tccatttgca aagagaactt
     4141 aaagtcatac tgtcttcccc attcatcctg ccctccttgc acccccagct ttacagttct
     4201 gtaaagaagc caggctacaa gacagacaaa ggtatatttt tcctgctttg agagtggcca
     4261 agttgggata gatggcagtt ggcctttttc ctcccagtcc tatcagagct cttgagtcac
     4321 ttggcttcct gcataacaat atctcctctg ttctgaggaa cattctagca tagaaaatgg
     4381 aatatgctgc aaacatttct agatccttcc tcccttcccc ctccttaaag aacaaagaag
     4441 ggacacacag catgcctacc acacagcttc attccaggta tgcttgcgcc tgacagtaca
     4501 gctagagcct tctctgtggg gcctgctggg tctcctgcag ccttagagaa tattttactt
     4561 ggcattttac taggcagttg aaaacctagt agagtttgaa caaagcgcac cccaccccac
     4621 ccgtccttca cccagcagca gagctcacca tgagggtgca gagtagagca cttggattgc
     4681 caagtaggga gaggaagtag ttgagggttg catggctgta tccacactgg cctggcttct
     4741 taaggctgtg caccactatg ggatcctttg cagaatggta ctcataaaat ggtttaaaca
     4801 acacatgctt aattgactgt gcaggatgtc aatcaatctg ggtttgcttt attttatttt
     4861 atatatatat tttttggtat cctgtacatt gcagtgggta tgaagatagt attttaatat
     4921 ttgtacaaag tttaatttaa ttttaattgt tctatgtata taactgcatt tctaaataat
     4981 aataaaaatt cttatgaagg caaaaaaaaa aaaaaaaaaa aaaaa
//
