LOCUS       NM_025491               1419 bp    mRNA    linear   ROD 06-AUG-2023
DEFINITION  Mus musculus sushi domain containing 3 (Susd3), transcript variant
            1, mRNA.
ACCESSION   NM_025491
VERSION     NM_025491.4
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 1419)
  AUTHORS   Nakano Y, Jahan I, Bonde G, Sun X, Hildebrand MS, Engelhardt JF,
            Smith RJ, Cornell RA, Fritzsch B and Banfi B.
  TITLE     A mutation in the Srrm4 gene causes alternative splicing defects
            and deafness in the Bronx waltzer mouse
  JOURNAL   PLoS Genet 8 (10), e1002966 (2012)
   PUBMED   23055939
REFERENCE   2  (bases 1 to 1419)
  AUTHORS   Thiagarajan RD, Georgas KM, Rumballe BA, Lesieur E, Chiu HS, Taylor
            D, Tang DT, Grimmond SM and Little MH.
  TITLE     Identification of anchor genes during kidney development defines
            ontological relationships, molecular subcompartments and regulatory
            pathways
  JOURNAL   PLoS One 6 (2), e17286 (2011)
   PUBMED   21386911
  REMARK    Publication Status: Online-Only
REFERENCE   3  (bases 1 to 1419)
  AUTHORS   Blackshaw S, Harpavat S, Trimarchi J, Cai L, Huang H, Kuo WP, Weber
            G, Lee K, Fraioli RE, Cho SH, Yung R, Asch E, Ohno-Machado L, Wong
            WH and Cepko CL.
  TITLE     Genomic analysis of mouse retinal development
  JOURNAL   PLoS Biol 2 (9), E247 (2004)
   PUBMED   15226823
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC140284.3.
            
            [WARNING] On Jan 17, 2024 this sequence was replaced by
            NM_025491.5.
            
            On Feb 13, 2018 this sequence version replaced NM_025491.3.
            
            Transcript Variant: This variant (1) encodes the longest isoform
            (1).
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK003860.1, AK006068.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374, SAMN00849375
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-250               AC140284.3         143789-144038       c
            251-439             AC140284.3         136227-136415       c
            440-587             AC140284.3         134533-134680       c
            588-776             AC140284.3         133168-133356       c
            777-1419            AC140284.3         126433-127075       c
FEATURES             Location/Qualifiers
     source          1..1419
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="13"
                     /map="13 25.16 cM"
     gene            1..1419
                     /gene="Susd3"
                     /gene_synonym="1700017I11Rik; 2810440J20Rik"
                     /note="sushi domain containing 3"
                     /db_xref="GeneID:66329"
                     /db_xref="MGI:MGI:1913579"
     exon            1..250
                     /gene="Susd3"
                     /gene_synonym="1700017I11Rik; 2810440J20Rik"
                     /inference="alignment:Splign:2.1.0"
     CDS             163..972
                     /gene="Susd3"
                     /gene_synonym="1700017I11Rik; 2810440J20Rik"
                     /note="isoform 1 is encoded by transcript variant 1; sushi
                     domain-containing protein 3"
                     /codon_start=1
                     /product="sushi domain-containing protein 3 isoform 1"
                     /protein_id="NP_079767.2"
                     /db_xref="CCDS:CCDS26498.1"
                     /db_xref="GeneID:66329"
                     /db_xref="MGI:MGI:1913579"
                     /translation="MRRTSATLRGRARPRWRAGNTTPVPVNQTGTCAQLHPPPQGTLQ
                     VVRGDGTSLGTVLIFHCPSGHQMVGSGLLTCAWNGSTVDWSSGSPVCKAVPPHETFGF
                     KVAVIASIVSCAIILLMSMAFLTCCLLKCVQKNERRRADRTAQLWYQLRGEDLETVQA
                     AYLGLKGHNHNNSSSVGGGNGGPSGGGGKPGIQHSQAHDNHSFTTDPGDIREQAGVTH
                     SVDKDPWTFRMGTPGPGGCSSSPGTYVMVHALNSAGLAPGNPGRPKVYLPG"
     exon            251..439
                     /gene="Susd3"
                     /gene_synonym="1700017I11Rik; 2810440J20Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            440..587
                     /gene="Susd3"
                     /gene_synonym="1700017I11Rik; 2810440J20Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            588..776
                     /gene="Susd3"
                     /gene_synonym="1700017I11Rik; 2810440J20Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            777..1419
                     /gene="Susd3"
                     /gene_synonym="1700017I11Rik; 2810440J20Rik"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 agtgcaaggg gttggcggga ccggactaaa gttcaactct agcgtcttgg agggcgcgac
       61 ctgggtgtgg ctagagacag ccacgccttc caacgacccg cccctcaatt aagtcccgcc
      121 cccacctccg caagctccac agaacactgc ggagcgctca ggatgcgccg aacgtctgcg
      181 acccttcggg gccgagcgag gccgcggtgg cgtgctggga acacaacgcc tgtcccagtg
      241 aaccagacag gcacctgtgc tcagctccat cccccgcctc aaggcacctt gcaagtcgtc
      301 cgtggagatg gcacatctct ggggactgtg ctcatattcc actgcccctc tggccaccag
      361 atggtggggt ctggcctcct cacttgtgcc tggaatggga gcaccgttga ctggtcttca
      421 ggaagccctg tgtgcaaagc tgtgccaccg catgagacct tcggctttaa ggtggcagtg
      481 atcgcctcca ttgtgagctg tgccatcatc ctgctcatgt ccatggcctt cctcacctgc
      541 tgcctcctca agtgtgtgca gaaaaatgag cggcggcgtg ctgacaggac ggcacaactc
      601 tggtaccagc tgagaggcga ggacctggag acggtacaag ctgcctactt gggcctcaag
      661 ggacacaacc acaataacag cagcagcgtc ggtggtggca atggtggccc cagtggtggt
      721 ggcggcaagc caggaattca gcacagccag gcccatgaca accacagctt caccacagac
      781 cctggtgaca tcagagagca ggctggtgtg acccacagtg tggacaaaga cccttggact
      841 ttcaggatgg gaactccggg ccctggtggc tgctccagct cgccaggcac ctacgtgatg
      901 gtccacgcgt tgaactctgc agggctggcc cctggaaatc ctgggaggcc caaagtgtac
      961 cttccagggt gaccccacta gccagaggtc tgcaagtcaa cgtttgccca gctggacatg
     1021 ggccagggca gtcacctcca ggcatagggg gccatcggga gcctagctga cattaaaggc
     1081 tggggcccca gtggggagca gtcttttcta gaggtctcct ctgtggctgt tacaggacct
     1141 gctcaatgaa ctgctactgg ggtgatgtcc cgaagaagtc accacaacca gggttttttt
     1201 agagagattg agacatttta aacagatata gttttacata gtagactatg aaaatattaa
     1261 taaagtactt tcagcaaaac aggtagccac cttatcatct tctggggcat ggacgccccg
     1321 cctggaagcc aggaccccca gaacttcatc tgtcaactgt ggtgagagaa atggatgtgt
     1381 tttctttgca taaaaacata aagtggggtt ggaagtgca
//
