LOCUS       NM_001163288            3295 bp    mRNA    linear   ROD 05-AUG-2023
DEFINITION  Mus musculus sushi domain containing 1 (Susd1), mRNA.
ACCESSION   NM_001163288 XM_909547 XM_988632
VERSION     NM_001163288.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 3295)
  AUTHORS   Tang T, Li L, Tang J, Li Y, Lin WY, Martin F, Grant D, Solloway M,
            Parker L, Ye W, Forrest W, Ghilardi N, Oravecz T, Platt KA, Rice
            DS, Hansen GM, Abuin A, Eberhart DE, Godowski P, Holt KH, Peterson
            A, Zambrowicz BP and de Sauvage FJ.
  TITLE     A mouse knockout library for secreted and transmembrane proteins
  JOURNAL   Nat Biotechnol 28 (7), 749-755 (2010)
   PUBMED   20562862
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            BY721012.1, AL824704.27, AK041075.1, AL808112.34 and AK084362.1.
            
            [WARNING] On Jan 17, 2024 this sequence was replaced by
            NM_001163288.3.
            
            On Oct 20, 2009 this sequence version replaced NM_001163288.1.
            
            Sequence Note: This RefSeq record was created from transcript and
            genomic sequence data to make the sequence consistent with the
            reference genome assembly. The genomic coordinates used for the
            transcript record were based on transcript alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC158124.1, SRR13422598.1881280.1
                                           [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMN00849374,
                                           SAMN00849375 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-546               BY721012.1         1-546
            547-698             AL824704.27        74147-74298         c
            699-851             AL824704.27        62322-62474         c
            852-1031            AL824704.27        61422-61601         c
            1032-1211           AL824704.27        40725-40904         c
            1212-1309           AL824704.27        31013-31110         c
            1310-1496           AL824704.27        29751-29937         c
            1497-1606           AL824704.27        19683-19792         c
            1607-1799           AL824704.27        15874-16066         c
            1800-2175           AK041075.1         78-453
            2176-2434           AL808112.34        213773-214031       c
            2435-2474           AL808112.34        209178-209217       c
            2475-3295           AK084362.1         162-982
FEATURES             Location/Qualifiers
     source          1..3295
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="4"
                     /map="4 32.5 cM"
     gene            1..3295
                     /gene="Susd1"
                     /gene_synonym="A530080P10; Gm12528"
                     /note="sushi domain containing 1"
                     /db_xref="GeneID:634731"
                     /db_xref="MGI:MGI:3651543"
     exon            1..428
                     /gene="Susd1"
                     /gene_synonym="A530080P10; Gm12528"
                     /inference="alignment:Splign:2.1.0"
     CDS             311..2569
                     /gene="Susd1"
                     /gene_synonym="A530080P10; Gm12528"
                     /codon_start=1
                     /product="sushi domain-containing protein 1 precursor"
                     /protein_id="NP_001156760.2"
                     /db_xref="CCDS:CCDS51184.1"
                     /db_xref="GeneID:634731"
                     /db_xref="MGI:MGI:3651543"
                     /translation="MGRGPRGTRRSPGCGLQRLLRLVLLLSLARGVSGEPGTEDVDVC
                     ATCHEHATCQQKEGKRICICNYGFWGNGRTRCVDKDECQFGATVICGNHTSCHNTPGG
                     FYCICHEGYRATNNNETFIPNDGTFCADIDECEDSGLCRHGGRCVNTPGSFACYCMEG
                     YVAKNGPEPFHPRTDATSCTEIDCGIPPEVPEGYVVGSYSSTLGGQAHYSCKEGFLSV
                     SGDRISRCTALGVWEPPKLHCQEISCGSPPEIQNAILVGNHSSRQGSVAHYDCQEGFE
                     SPGGKITSVCTEKGAWSEITYACTEIMIEIHDVLVFNDTCVRWQISPERVNARIVYLI
                     RVERQQPDAAESVYEETVNVTTDSRTPEVCLHLQQGTNYTISISAAPPRRSVPAILGF
                     QTPEDDLLEDDGLFNISVFNETCLTLSRHSRQVGSEQMYQVEVLGQRWYLESSYHAAL
                     FNFTTRDRAPEVCLDLYPATDYTINITLLRPTEPRSAQITITTSVTAKQTIANISVYN
                     DTCLRWSSLKTADVLEMYLFHIWGQRWYQKAFVQEMVFNTTSSSQDPEICLDLHQGTS
                     YNVSLQALSSALPVVIYLTTQITEPPLPEVDFFTVRGRPLPRFTLRKVKEINGPISSY
                     QVLVLPLSLQSTFSCDSEGMTSFFGNTSPADGYVAAEILASDVPDDTLEISIGDRLYY
                     GEYYNAPLKTGNEYCILLRITSEWNKVRRYSCAVWAEVKDSSLTAQQMVGVGLGSVAF
                     VTILAFFSFSAV"
     exon            429..542
                     /gene="Susd1"
                     /gene_synonym="A530080P10; Gm12528"
                     /inference="alignment:Splign:2.1.0"
     exon            543..698
                     /gene="Susd1"
                     /gene_synonym="A530080P10; Gm12528"
                     /inference="alignment:Splign:2.1.0"
     exon            699..851
                     /gene="Susd1"
                     /gene_synonym="A530080P10; Gm12528"
                     /inference="alignment:Splign:2.1.0"
     exon            852..1031
                     /gene="Susd1"
                     /gene_synonym="A530080P10; Gm12528"
                     /inference="alignment:Splign:2.1.0"
     exon            1032..1211
                     /gene="Susd1"
                     /gene_synonym="A530080P10; Gm12528"
                     /inference="alignment:Splign:2.1.0"
     exon            1212..1309
                     /gene="Susd1"
                     /gene_synonym="A530080P10; Gm12528"
                     /inference="alignment:Splign:2.1.0"
     exon            1310..1496
                     /gene="Susd1"
                     /gene_synonym="A530080P10; Gm12528"
                     /inference="alignment:Splign:2.1.0"
     exon            1497..1606
                     /gene="Susd1"
                     /gene_synonym="A530080P10; Gm12528"
                     /inference="alignment:Splign:2.1.0"
     exon            1607..1799
                     /gene="Susd1"
                     /gene_synonym="A530080P10; Gm12528"
                     /inference="alignment:Splign:2.1.0"
     exon            1800..1891
                     /gene="Susd1"
                     /gene_synonym="A530080P10; Gm12528"
                     /inference="alignment:Splign:2.1.0"
     exon            1892..2078
                     /gene="Susd1"
                     /gene_synonym="A530080P10; Gm12528"
                     /inference="alignment:Splign:2.1.0"
     exon            2079..2175
                     /gene="Susd1"
                     /gene_synonym="A530080P10; Gm12528"
                     /inference="alignment:Splign:2.1.0"
     exon            2176..2434
                     /gene="Susd1"
                     /gene_synonym="A530080P10; Gm12528"
                     /inference="alignment:Splign:2.1.0"
     exon            2435..2474
                     /gene="Susd1"
                     /gene_synonym="A530080P10; Gm12528"
                     /inference="alignment:Splign:2.1.0"
     exon            2475..2568
                     /gene="Susd1"
                     /gene_synonym="A530080P10; Gm12528"
                     /inference="alignment:Splign:2.1.0"
     exon            2569..3295
                     /gene="Susd1"
                     /gene_synonym="A530080P10; Gm12528"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 tcccaactct ctgacccgtc cagtcagaga ccctttcctg tggctactgc acttctctgg
       61 tctccacaag tcacacttgc actgcgatgt ttccccccta gcacagtccg ctttctcccc
      121 gtggctcagc tcgcgcgcag ccggtgcacc aggcgcacct agatccgggg acctgggacc
      181 ctgctccccg ccgggaccgg cgcaacccgg cgccggaagc ctctgcgccg ccccttcctc
      241 gcgcctctgg ccttatctcc ttgcacaggg gcctccgggg agtggcgggc gccgggaggg
      301 agccagcggc atgggccggg gtccccgggg cacgcgccgc tctccaggat gcgggttgca
      361 gcggctgctg cggctcgtgc tgctgctcag cctagcccgc ggcgtcagcg gagagcctgg
      421 cacggaagat gtagatgtct gtgccacgtg ccatgaacat gccacatgcc agcaaaagga
      481 agggaagaga atctgcattt gcaactatgg gttttggggc aacgggagga cacggtgtgt
      541 tgacaaagat gagtgccagt ttggagccac tgtgatctgt gggaaccaca catcctgcca
      601 caacacgcct ggagggttct actgcatttg ccacgagggc taccgggcca caaataacaa
      661 cgagacgttc atccccaatg acggcacttt ctgtgcagac atcgatgagt gtgaagattc
      721 tggcctgtgc agacatggag ggcggtgtgt caatactcct gggagctttg catgctactg
      781 catggaaggg tatgtggcaa agaacgggcc tgagcctttc cacccacgca cggatgccac
      841 atcgtgcaca gaaatagact gtggcatccc tcctgaagtt cctgagggct acgtcgtggg
      901 aagctacagc tccacactgg gcggccaggc ccattatagc tgcaaggaag ggtttctcag
      961 cgtctcagga gacagaattt cacgatgcac agccctgggt gtgtgggaac ctcccaagtt
     1021 acattgccaa gagatcagct gtggcagccc tcctgaaatt cagaacgcca tcttggtcgg
     1081 gaatcacagc tccagacagg ggagtgtggc tcattatgac tgtcaggagg gctttgagag
     1141 tccaggagga aagatcactt ccgtttgcac agagaaaggc gcctggagtg aaatcactta
     1201 tgcatgcaca gaaataatga tagaaattca tgatgtgttg gtgtttaatg acacctgtgt
     1261 gagatggcaa ataagtccag agagagtgaa cgccaggatc gtgtacttga tacgcgttga
     1321 aagacagcag ccggatgctg cggaatcagt ttatgaggag acagtcaatg tgaccacaga
     1381 cagcagaacc ccagaagtgt gcctgcacct ccaacaagga accaattaca ccataagcat
     1441 ttctgcagcc cctcccaggc gctctgtgcc cgccatcctt ggcttccaga cccctgaaga
     1501 tgatctctta gaagatgacg gacttttcaa tatctcagta tttaatgaaa cttgtttgac
     1561 gttgagcagg cactctaggc aagttggatc agaacaaatg taccaagtgg aggttctggg
     1621 tcagaggtgg tatctagaga gctcctacca tgctgctctc tttaacttca caacaagaga
     1681 ccgagctcca gaagtgtgtt tagatctgta ccccgctact gattacacga taaacatcac
     1741 ccttctgaga cccactgagc cgcgctccgc acaaataacc ataacaacct cagtgacagc
     1801 aaaacagacc atcgctaata tttcggtata taatgatacc tgcctgagat ggagcagcct
     1861 caagacagct gatgtactag agatgtattt attccacatt tggggccaga gatggtatca
     1921 gaaggcattt gtccaggaaa tggtcttcaa tacaaccagc agcagccagg accctgagat
     1981 atgcctggac ctgcatcaag gcaccagcta caacgttagc cttcaggctc tgtcttcggc
     2041 acttcccgtg gtcatctacc tgacaaccca gatcacagag cccccacttc ctgaagtaga
     2101 ctttttcact gtgcggggaa ggcctctacc acgcttcacg ctgaggaaag tcaaggagat
     2161 aaatggacct atcagttcat atcaggtgtt ggtccttccc ctgtccttgc aaagcacatt
     2221 ttcttgtgat tctgaaggca tgacttcatt ctttggcaac acttctcctg ctgacggata
     2281 tgtggctgca gaaatcctgg ccagtgatgt tccagacgac acgttggaga tatctattgg
     2341 agacaggctc tactatgggg aatattacaa tgcacctttg aaaacaggaa atgagtactg
     2401 cattctgtta cggatcacaa gtgaatggaa taaggtgaga agatattcct gtgctgtctg
     2461 ggctgaggta aaagactcat cgctcacagc gcagcagatg gtgggtgttg gactgggctc
     2521 cgtggctttt gtgaccatcc ttgcattctt ctccttctca gcagtgtgat ggctcagcct
     2581 gggaagactg acttgatgat gcacagatgt tctgacagct tctcaggccc gtctgtggtg
     2641 tggctcccat cctaagccct ggtgtggggc tgaaactttc tccaacccag catgacctca
     2701 ttcctgaatt tgagatgata gccatctctg tggaatctta aaacttggga gcagtttatg
     2761 tgtgcttcgt gctttctgga tcagttgtat atctgtgacc tcaagactca tgtccaatgt
     2821 aacaccacag gccacagacc ctgtgagtca gcccctgttt acactggatg tggacaggcc
     2881 acagaccctg tgactcaggt cccatagaca ttggatgttg aacctctgcc tcttccttta
     2941 attagttcat ctactaacta gttcaggatc tgttctcctc aacaggtaat gagatgggct
     3001 taagtctggg ctggaattga tgaaggagct caccagatag agaacaaata tgaatagata
     3061 tgaataaatg tttcaagcat tttaggattc gcccctggcc tataccagaa agtacaatag
     3121 cctggctact ctctcaggtt cccttcgtgg ctttgatata attcctgtcg tttgtgtgag
     3181 accaaaagtg atgtctgctt tccagaaaaa cccattctgt aatttcttcc ccattcctct
     3241 tttttgtccc ccttttctta ctcattttct ataaaattgt tctgtgcctc ccttg
//
