LOCUS       NM_028150               2692 bp    mRNA    linear   ROD 30-APR-2024
DEFINITION  Mus musculus SPT7-like, STAGA complex gamma subunit (Supt7l), mRNA.
ACCESSION   NM_028150 XM_355594
VERSION     NM_028150.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 2692)
  AUTHORS   Adams,D.J., Barlas,B., McIntyre,R.E., Salguero,I., van der
            Weyden,L., Barros,A., Vicente,J.R., Karimpour,N., Haider,A.,
            Ranzani,M., Turner,G., Thompson,N.A., Harle,V., Olvera-Leon,R.,
            Robles-Espinoza,C.D., Speak,A.O., Geisler,N., Weninger,W.J.,
            Geyer,S.H., Hewinson,J., Karp,N.A., Fu,B., Yang,F., Kozik,Z.,
            Choudhary,J., Yu,L., van Ruiten,M.S., Rowland,B.D., Lelliott,C.J.,
            Del Castillo Velasco-Herrera,M., Verstraten,R., Bruckner,L.,
            Henssen,A.G., Rooimans,M.A., de Lange,J., Mohun,T.J., Arends,M.J.,
            Kentistou,K.A., Coelho,P.A., Zhao,Y., Zecchini,H., Perry,J.R.B.,
            Jackson,S.P. and Balmus,G.
  CONSRTM   Sanger Mouse Genetics Project
  TITLE     Genetic determinants of micronucleus formation in vivo
  JOURNAL   Nature 627 (8002), 130-136 (2024)
   PUBMED   38355793
REFERENCE   2  (bases 1 to 2692)
  AUTHORS   Ingham,N.J., Pearson,S.A., Vancollie,V.E., Rook,V., Lewis,M.A.,
            Chen,J., Buniello,A., Martelletti,E., Preite,L., Lam,C.C.,
            Weiss,F.D., Powis,Z., Suwannarat,P., Lelliott,C.J., Dawson,S.J.,
            White,J.K. and Steel,K.P.
  TITLE     Mouse screen reveals multiple new genes underlying mouse and human
            hearing loss
  JOURNAL   PLoS Biol 17 (4), e3000194 (2019)
   PUBMED   30973865
  REMARK    Publication Status: Online-Only
REFERENCE   3  (bases 1 to 2692)
  AUTHORS   Yokoyama,S., Ito,Y., Ueno-Kudoh,H., Shimizu,H., Uchibe,K.,
            Albini,S., Mitsuoka,K., Miyaki,S., Kiso,M., Nagai,A., Hikata,T.,
            Osada,T., Fukuda,N., Yamashita,S., Harada,D., Mezzano,V., Kasai,M.,
            Puri,P.L., Hayashizaki,Y., Okado,H., Hashimoto,M. and Asahara,H.
  TITLE     A systems approach reveals that the myogenesis genome network is
            regulated by the transcriptional repressor RP58
  JOURNAL   Dev Cell 17 (6), 836-848 (2009)
   PUBMED   20059953
REFERENCE   4  (bases 1 to 2692)
  AUTHORS   Nagy,Z., Riss,A., Romier,C., le Guezennec,X., Dongre,A.R.,
            Orpinell,M., Han,J., Stunnenberg,H. and Tora,L.
  TITLE     The human SPT20-containing SAGA complex plays a direct role in the
            regulation of endoplasmic reticulum stress-induced genes
  JOURNAL   Mol Cell Biol 29 (6), 1649-1660 (2009)
   PUBMED   19114550
REFERENCE   5  (bases 1 to 2692)
  AUTHORS   Zhao,Y., Lang,G., Ito,S., Bonnet,J., Metzger,E., Sawatsubashi,S.,
            Suzuki,E., Le Guezennec,X., Stunnenberg,H.G., Krasnov,A.,
            Georgieva,S.G., Schule,R., Takeyama,K., Kato,S., Tora,L. and
            Devys,D.
  TITLE     A TFTC/STAGA module mediates histone H2A and H2B deubiquitination,
            coactivates nuclear receptors, and counteracts heterochromatin
            silencing
  JOURNAL   Mol Cell 29 (1), 92-101 (2008)
   PUBMED   18206972
REFERENCE   6  (bases 1 to 2692)
  AUTHORS   McKee,A.E., Minet,E., Stern,C., Riahi,S., Stiles,C.D. and
            Silver,P.A.
  TITLE     A genome-wide in situ hybridization map of RNA-binding proteins
            reveals anatomically restricted expression in the developing mouse
            brain
  JOURNAL   BMC Dev Biol 5, 14 (2005)
   PUBMED   16033648
  REMARK    Publication Status: Online-Only
REFERENCE   7  (bases 1 to 2692)
  AUTHORS   Stryke,D., Kawamoto,M., Huang,C.C., Johns,S.J., King,L.A.,
            Harper,C.A., Meng,E.C., Lee,R.E., Yee,A., L'Italien,L.,
            Chuang,P.T., Young,S.G., Skarnes,W.C., Babbitt,P.C. and Ferrin,T.E.
  TITLE     BayGenomics: a resource of insertional mutations in mouse embryonic
            stem cells
  JOURNAL   Nucleic Acids Res 31 (1), 278-281 (2003)
   PUBMED   12520002
REFERENCE   8  (bases 1 to 2692)
  AUTHORS   Martinez,E., Palhan,V.B., Tjernberg,A., Lymar,E.S., Gamper,A.M.,
            Kundu,T.K., Chait,B.T. and Roeder,R.G.
  TITLE     Human STAGA complex is a chromatin-acetylating transcription
            coactivator that interacts with pre-mRNA splicing and DNA
            damage-binding factors in vivo
  JOURNAL   Mol Cell Biol 21 (20), 6782-6795 (2001)
   PUBMED   11564863
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            BY129485.1 and BC031447.1.
            
            On May 7, 2009 this sequence version replaced NM_028150.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC031447.1, SRR1660815.22731.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN01164141, SAMN01164142
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-310               BY129485.1         2-311
            311-2206            BC031447.1         234-2129
            2207-2692           BC031447.1         2131-2616
FEATURES             Location/Qualifiers
     source          1..2692
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="5"
                     /map="5 17.27 cM"
     gene            1..2692
                     /gene="Supt7l"
                     /gene_synonym="2610524B01Rik; 6030455L14Rik"
                     /note="SPT7-like, STAGA complex gamma subunit"
                     /db_xref="GeneID:72195"
                     /db_xref="MGI:MGI:1919445"
     exon            1..148
                     /gene="Supt7l"
                     /gene_synonym="2610524B01Rik; 6030455L14Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            149..756
                     /gene="Supt7l"
                     /gene_synonym="2610524B01Rik; 6030455L14Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            757..1081
                     /gene="Supt7l"
                     /gene_synonym="2610524B01Rik; 6030455L14Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1082..1319
                     /gene="Supt7l"
                     /gene_synonym="2610524B01Rik; 6030455L14Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1320..2677
                     /gene="Supt7l"
                     /gene_synonym="2610524B01Rik; 6030455L14Rik"
                     /inference="alignment:Splign:2.1.0"
     regulatory      2653..2658
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Supt7l"
                     /gene_synonym="2610524B01Rik; 6030455L14Rik"
                     /note="hexamer: AATAAA"
     polyA_site      2677
                     /gene="Supt7l"
                     /gene_synonym="2610524B01Rik; 6030455L14Rik"
                     /note="major polyA site"
ORIGIN      
        1 aacttcctgt ggcagagggc gattgggaag aagtgcttcc gtggccttgg tccattaatc
       61 aataaacaag gctcctaggc ttgacctagt cctcgactcc gacctgtcag agtcaggcag
      121 ccgcgtatac cactcctggg gcagggcggg agagtattgt ctgtcctaga gttttgctag
      181 caccttttta aagtgatctt agcttgcttc ttatgtggga actgcctaga cttcctactt
      241 ttcactgcag aagcttctga tctacagttg ccagagacgg aagcacacac ctttaggaga
      301 tcgtttacat taagctggag agcccttctc tgcttgctct aaaatgctga ggtactgggg
      361 agagatacca ataccgtcag gacagaccaa cagaagttcc tttgatctgc tcccacggga
      421 gttccgtctg gtggaagtcc atgacccgcc cctgcaccag ccctcagcca acaagccgaa
      481 gccccccacg atgctggaca ttccctcaga accgtgtagc ctcaccatcc ataccattca
      541 gttgatccaa cacaaccgac gcctgcgcag ccttattgcc acagctcaga cccagagtca
      601 gcagcagaca gagggtgtga aggctgaaga gagtgaacct cttccctcct gccctggctc
      661 acctcctctc cctgatgacc tccagccttt agactgtaaa aatcccaatg ctccattcca
      721 gatccggcac agtgacccag agagtgactt ttaccgcggg aaaggagagc ctgtgacaga
      781 gctgagctgg cactcctgcc ggcagctcct ctatcaagca gtcgccacaa tcctggccca
      841 cacaggcttt gagtgtgcta atgaaagtgt cctggagacc ctaactgatg tggcacatga
      901 atactgcctc aagttcacca agctgctgcg ctttgctgtc gaccgagagg ccctgctggg
      961 acagactcct ttccctgatg taatggaaca ggtgttccat gaagtgggca ttggcagtgt
     1021 gctctccctg cagaagttct ggcagcaccg catcaaggac tatcacactt acatgctaca
     1081 gattagtaag cagctctctg aagaatatga aaggattgtg aatcccgaga aggccacaga
     1141 agacactaaa cctgtgaaga tcaaggaaga gcctgtgagc gacatcacat ttcctgtcag
     1201 tgaggagcta gaagcggacc ttgcttctgg agatcagtcc ttacccattg gggtcctcgg
     1261 ggctcagagt gagcgcttcc catccaacct ggaggtggag gcttcgccac aggctccaag
     1321 tgcagaggtc aatgcttctc ctctctggaa cctggctcac gtgaaaatgg aacctcaaga
     1381 aagtgaagaa ggcaatgtgt ctgcgcatgg ggtgctgggc agtgatgtct ttgaggagcc
     1441 aatgtcaggc atgagtgagg ctggactccc tcagagccct gacgactcag acagcagcta
     1501 tggttcccac tccactgaca gcctcatggg gtcctcccct gtgttcaatc agcgctgcag
     1561 gaagaggatg aggaagattt aactgcagag cgccagcagg aagcccatga gtagtaatta
     1621 gactgtattc ttaagtgtag acctttgcta atgtcagaga cagttcctaa cctagtaaca
     1681 gttcactttg cgtcgtttct gtacttcttt aaaacaacta agccaccgtt cgcagctgag
     1741 ttgtgatact gacctggtaa tcagaccaaa gtactgtccc ggctggtttt atctcagctc
     1801 ctctcagccg tgtctctggc acgcttgaga ggagtcatgc cactttgatg ctccttgcag
     1861 aggtgggaca ctgaggtgct ttgcttaaat ttcaaagctt gcatatattc atgtaaatat
     1921 atgcaatata tgacgtctat aatagacgtc agcaattcat tcgtctattt tgtgtcgtca
     1981 ttgggaaccc agtagcaaga cagacagtaa cagctaaact taagtccatc agtcagagtt
     2041 caaactattc atgctactca ggcctcttac aaagtgagag ccgtggggac agctgttacc
     2101 cttatgcagc tgtccccaga gttctttctt ttctagatta ttccagccag cctcgtcatt
     2161 tttactttcc atatgctctt gtgctgaccc agactttttt ttttttcgag gcagggtttc
     2221 tctgtgtagc cctggctgtc ctggaactca ctttgtagac caggctggcc ttgaactcag
     2281 aaatctgcct gcctctgcct cccgagtgct gggattaaag gcatgtgcca cccacgcctg
     2341 acttttgacc cagactttta agtatctttc accatgcaca cgctttcacc ttttctcctt
     2401 gtgaaggtgg caaacagggc ccaccacagc tgccgggtac gcagcatctg gctttgcttc
     2461 agaacagctg ttggtttgtt tcaggtgttt gttttggttg ttttgtttaa aaagacattt
     2521 gaggatccag agagatgggt cagtgggtaa agtcacttgc aatttaagtt tgataccggg
     2581 gacacacatg gtgtaaggag agaaccaact cctccatcat gacacacaca cacacacaca
     2641 cacacacata aaaataaatt atttttggaa aaagtcaaaa aaaaaaaaaa aa
//
