LOCUS       XM_036163195            2829 bp    mRNA    linear   ROD 07-FEB-2024
DEFINITION  PREDICTED: Mus musculus SPT20 SAGA complex component (Supt20),
            transcript variant X24, mRNA.
ACCESSION   XM_036163195
VERSION     XM_036163195.1
DBLINK      BioProject: PRJNA169
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000069.7) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001635.27-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/01/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2829
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6J"
                     /db_xref="taxon:10090"
                     /chromosome="3"
     gene            1..2829
                     /gene="Supt20"
                     /gene_synonym="D3Ertd300e; Fam48a; p38IP; Supt20h"
                     /note="SPT20 SAGA complex component; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 7
                     mRNAs, 36 ESTs, 497 long SRA reads, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 34 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:56790"
                     /db_xref="MGI:MGI:1929651"
     CDS             397..2547
                     /gene="Supt20"
                     /gene_synonym="D3Ertd300e; Fam48a; p38IP; Supt20h"
                     /codon_start=1
                     /product="transcription factor SPT20 homolog isoform X14"
                     /protein_id="XP_036019088.1"
                     /db_xref="GeneID:56790"
                     /db_xref="MGI:MGI:1929651"
                     /translation="MQETLSCLVVNLYPGNEGYSLMLRGKNGSDSETIRLPYEEGELL
                     EYLDAEELPPILVDLLEKSQVNIFHCGCVIAEIRDYRQSSNMKSPGYQSRHILLRPTM
                     QTLVCDVHSITSDNHKWTQEDKLLLESQLILATAEPLCLDPSVAVACTANRLLYNRQK
                     MNTRPMKRCWKRYSRSSLNRQQDLSHGPPPPQLRLLDFLQKRKERKAGQHYDLKISKA
                     GNCVDMWKRSPCNLAVPSEVDVEKYAKVEESIKSDDSQPTMWPAHDVKDDYVFECEGG
                     NQYQKTKLTILQSLGDPLYYGKIQPWKADEENDSQMSPSHSSADDHSNWFVIGSKTDA
                     ERVVNQYQELVQNEAKCPVKMSHSSSGSAALSPGEEAEQAETSSIQSSVLGKGVKHRP
                     PPIKLPSGSGNSSSGNYFTAQQASSFLKSPTPPPSCKPSLSRKSSVDLSQVSMLSPAA
                     LSPASSSQRSSLSPVMADSAGLTSVSVLSSAGGAQALKSGSNSMLGCDTGAIPPAGKS
                     LCSGLLPSGGLVANTLPSAVQAAPQAGIPFGLQNTSSLRPLNLLQLPGGSLIFNTQQQ
                     QQQTQLPHFIQQPQQPAASGSQQPEEQGSEQGLTAQEQALTAQQAAVINLTGVGGFPQ
                     SQAAVLSQLGSAENRPEQSLPQQRLQLSSAFQQQQQQQQQQQQQQLQQLRFLQHQMAM
                     AAAAAQTAQLHRHRHTGSQSKSKMKRGMPTTPKF"
ORIGIN      
        1 cctcaaggcc cgccccttcc actagcaacg caccaatcgg aagcgcggcc gcaggaagtg
       61 gcggttggag gtgtgggtgg gcgttacagc aggccttagg tatttctgga aaatcgctgc
      121 aaggttggca gaatgcttct tcagggcgga gtgcggtgtg actgttgagt agaggttgct
      181 tctctgtgga gttggcgttc tgaggtatag aagaagacat ggtttccacc ccacttccac
      241 agcacgtcta agttttatct tttttggggt ccttatctgt tgccacaatg aaagtctata
      301 tttcaaaaac tttatgactt atatgttgaa gaatgtgaaa aagaacccga ggttaagaaa
      361 ttaagaagaa atgtgaactt gttagagaag cttgttatgc aggagacttt gtcgtgttta
      421 gtagtcaatc tgtacccagg aaatgaaggc tattctctga tgctcagggg gaaaaatgga
      481 tcagattctg agaccatccg attgccttat gaagaaggag aattgcttga atacttagat
      541 gcagaagaat tacctcctat tttggtggat ctccttgaaa aatcacaggt taatattttt
      601 cattgtggat gtgtgatagc agaaatacgt gactataggc agtccagtaa tatgaagtct
      661 cctggttacc aaagtaggca cattctctta cgtccaacaa tgcagacttt agtctgtgat
      721 gtccattcta taacaagtga caaccataag tggacccagg aagacaaact tttgcttgag
      781 agccagctga ttctagctac agcagagcca ctgtgtcttg acccatcggt ggcagtagcg
      841 tgcactgcca ataggctgct ctataaccgg cagaagatga acactcgccc aatgaaacgg
      901 tgttggaaga ggtactccag gtcctccctg aaccgccagc aggacctctc tcacggccct
      961 cctccccctc agctgagact acttgatttc ttacaaaagc ggaaggaaag gaaagcaggc
     1021 cagcattatg acctcaaaat ttccaaagca ggaaattgtg tagacatgtg gaaacggagc
     1081 ccctgtaact tggctgtgcc ttctgaagta gatgtggaaa aatatgctaa agtggaggaa
     1141 tccatcaaat ctgacgactc acagccaaca atgtggccag ctcatgatgt aaaagacgat
     1201 tatgtatttg aatgtgaagg tggtaatcag tatcagaaaa caaagctgac catcttgcag
     1261 tctcttgggg atccacttta ctatggtaaa atacagccgt ggaaagcaga tgaagaaaat
     1321 gacagccaaa tgtctccatc ccactcctct gctgatgacc attcaaactg gtttgtcatt
     1381 gggtcaaaga ctgacgcaga gagggtagtt aatcaatacc aggagttggt ccagaatgaa
     1441 gccaaatgcc cagtgaagat gtcacacagc agtagtggtt cagccgctct cagtccaggg
     1501 gaggaggcag aacaggcgga gacctcgtcc attcagtctt cagttttggg aaagggagta
     1561 aaacaccgac ccccacccat caaacttccc tcaggctcag gaaatagttc ctcaggtaac
     1621 tatttcacag cacagcaggc cagcagcttc cttaaatctc caactcctcc tccatcgtgt
     1681 aagccaagcc tttctcggaa gtcttctgtg gacctcagtc aagttagcat gctttctcct
     1741 gccgccctgt cccctgccag ctcatcccag agaagctcgc tctccccggt catggcagac
     1801 tctgctgggc taacctccgt cagtgtactg agctctgctg gtggagccca ggctctgaag
     1861 agtggctcaa actccatgct gggctgtgac actggggcca tacctcctgc aggaaaaagc
     1921 ctgtgcagcg gccttctgcc atcaggaggt ctcgtagcaa acacactgcc cagtgccgtg
     1981 caggcggctc ctcaagcagg tatcccattt ggtttacaaa atacttcaag tctcagacct
     2041 ttaaatctac tccagcttcc tggtggttca ctcattttta acacccagca gcaacagcag
     2101 cagacgcagc tccctcactt tatacaacaa cctcagcagc ctgcagcttc cggttcccaa
     2161 cagccagagg agcagggttc tgaacaaggg ttaactgcgc aggaacaggc cttaactgct
     2221 cagcaagctg ccgttattaa ccttactgga gtaggaggct ttccccagtc acaggcagcc
     2281 gtgttgtctc agcttggctc tgctgagaac agacctgagc aaagccttcc tcagcagaga
     2341 ctccagctct cctctgcctt tcagcagcag cagcagcagc agcaacaaca acaacaacag
     2401 caactacaac agttgcgatt cttgcagcac caaatggcta tggcagcagc agccgcacaa
     2461 acagcccagc tacatcgtca ccggcacaca ggcagccagt caaagagtaa aatgaagaga
     2521 ggcatgccaa ctactccaaa attctgagca attttttttt tcttttttac aaacacgacc
     2581 attgaatgaa ttgtatttct actgttttcc cgagatgtca gtattttgca ttgctgtgtg
     2641 tgcacacttt acacagaagc acagccctgt gattcttaca tggaaacatg gtgaaatgtt
     2701 ttcctgtaca taccaatcgc agaaacaacg taaggactag aaatatcttt caaagaatgg
     2761 aattaggtat ttatttagta taaaaagcct gtgcagtgta acaaatacaa tttttacagc
     2821 tgttttgca
//
