LOCUS       NM_001290519            1178 bp    mRNA    linear   ROD 03-JUN-2024
DEFINITION  Mus musculus Sad1 and UNC84 domain containing 3 (Sun3), transcript
            variant 1, mRNA.
ACCESSION   NM_001290519 XM_006514596
VERSION     NM_001290519.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 1178)
  AUTHORS   Gao,Q., Khan,R., Yu,C., Alsheimer,M., Jiang,X., Ma,H. and Shi,Q.
  TITLE     The testis-specific LINC component SUN3 is essential for sperm head
            shaping during mouse spermiogenesis
  JOURNAL   J Biol Chem 295 (19), 6289-6298 (2020)
   PUBMED   32156700
  REMARK    GeneRIF: The testis-specific LINC component SUN3 is essential for
            sperm head shaping during mouse spermiogenesis.
REFERENCE   2  (bases 1 to 1178)
  AUTHORS   Gob,E., Schmitt,J., Benavente,R. and Alsheimer,M.
  TITLE     Mammalian sperm head formation involves different polarization of
            two novel LINC complexes
  JOURNAL   PLoS One 5 (8), e12072 (2010)
   PUBMED   20711465
  REMARK    Publication Status: Online-Only
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AK132922.1.
            
            On Mar 14, 2014 this sequence version replaced XM_006514596.1.
            
            Transcript Variant: This variant (1) encodes the longer isoform
            (a).
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK132922.1, HQ141857.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849384, SAMN00849385
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-1178              AK132922.1         2-1179
FEATURES             Location/Qualifiers
     source          1..1178
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="11"
                     /map="11 5.77 cM"
     gene            1..1178
                     /gene="Sun3"
                     /gene_synonym="Sunc1"
                     /note="Sad1 and UNC84 domain containing 3"
                     /db_xref="GeneID:194974"
                     /db_xref="MGI:MGI:3041199"
     exon            1..34
                     /gene="Sun3"
                     /gene_synonym="Sunc1"
                     /inference="alignment:Splign:2.1.0"
     CDS             33..995
                     /gene="Sun3"
                     /gene_synonym="Sunc1"
                     /note="isoform a is encoded by transcript variant 1; Sad1
                     and UNC84 domain containing 1; sad1/unc-84
                     domain-containing protein 1; SUN domain-containing protein
                     3"
                     /codon_start=1
                     /product="SUN domain-containing protein 3 isoform a"
                     /protein_id="NP_001277448.1"
                     /db_xref="CCDS:CCDS70140.1"
                     /db_xref="GeneID:194974"
                     /db_xref="MGI:MGI:3041199"
                     /translation="MLTRSWKIILSTVFISTFLLVGLLNHQWLKETEFPQKPRQLYTV
                     IAEYGSRLYNYQARLRMPKEQQELLKKESQTLENNFREILFLIEQIDVLKALLKDMKD
                     GVHNHSLPVHRDAVQDQATTDVLDEEMSNLVHYVLKKFRGDQIQLADYALKSAGASVI
                     EAGTSESYKNNKAKLYWHGIGFLNYEMPPDMILQPDVHPGKCWAFPGSQGHILIKLAR
                     KIIPTAVTMEHISEKVSPSGNISSAPKEFSVYGVMKKCEGEEIFLGQFIYNKMEATIQ
                     TFELQNEASESLLCVKLQILSNWGHPKYTCLYRFRVHGIPSDYT"
     exon            35..96
                     /gene="Sun3"
                     /gene_synonym="Sunc1"
                     /inference="alignment:Splign:2.1.0"
     exon            97..200
                     /gene="Sun3"
                     /gene_synonym="Sunc1"
                     /inference="alignment:Splign:2.1.0"
     exon            201..241
                     /gene="Sun3"
                     /gene_synonym="Sunc1"
                     /inference="alignment:Splign:2.1.0"
     exon            242..413
                     /gene="Sun3"
                     /gene_synonym="Sunc1"
                     /inference="alignment:Splign:2.1.0"
     exon            414..498
                     /gene="Sun3"
                     /gene_synonym="Sunc1"
                     /inference="alignment:Splign:2.1.0"
     exon            499..614
                     /gene="Sun3"
                     /gene_synonym="Sunc1"
                     /inference="alignment:Splign:2.1.0"
     exon            615..782
                     /gene="Sun3"
                     /gene_synonym="Sunc1"
                     /inference="alignment:Splign:2.1.0"
     exon            783..875
                     /gene="Sun3"
                     /gene_synonym="Sunc1"
                     /inference="alignment:Splign:2.1.0"
     exon            876..1178
                     /gene="Sun3"
                     /gene_synonym="Sunc1"
                     /inference="alignment:Splign:2.1.0"
     regulatory      1155..1160
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Sun3"
                     /gene_synonym="Sunc1"
                     /note="putative"
ORIGIN      
        1 acttccgaca ccctttggtc aactaacttg caatgttaac tcgatcatgg aagattatcc
       61 taagtacagt gtttatatca acttttcttc ttgttggact tctaaatcat cagtggctta
      121 aagaaacaga gtttcctcaa aaacccaggc aattatacac tgtcattgcc gaatatggct
      181 cccggctcta taattaccag gccagactcc gcatgcctaa ggagcaacag gaacttttaa
      241 agaaagaaag ccagactttg gagaacaatt ttcgtgaaat tctgttttta attgaacaaa
      301 tagatgttct gaaggcgttg cttaaagaca tgaaggacgg cgtacacaat cacagcttgc
      361 ctgttcaccg agatgctgtg caggaccagg ccactactga cgttctagat gaggaaatgt
      421 caaacttggt acattatgtg cttaaaaagt tcagagggga ccaaatacag ttggctgatt
      481 atgccttgaa gtcagcagga gcctctgtca ttgaagctgg gacctcagaa agttacaaaa
      541 ataataaagc aaaactgtac tggcatggca tagggttcct caactatgag atgcctccgg
      601 atatgatact tcagccagat gtccaccctg ggaagtgctg ggcctttcca ggttcccagg
      661 gtcacatcct gattaagctc gccaggaaga tcatcccaac agcagttacc atggagcaca
      721 tctcggagaa ggtgtcccct tcaggaaaca tctcaagtgc acccaaggag ttctctgtct
      781 atggcgttat gaagaaatgt gaaggagaag aaatattcct aggtcagttt atttataaca
      841 aaatggaagc aaccattcaa acatttgagc tccagaatga agcttctgaa tctttgctat
      901 gtgtaaaact tcaaatcctt agcaactggg gacatccaaa gtatacgtgt ttgtaccgat
      961 ttagagtcca cggcatcccc agtgattaca cttagaagag ctggtgcaga aggcagtggc
     1021 tgtgcagcca gaatgtccaa ggatgtttac tatttcctta cgtcagattg cacccctaag
     1081 aatcaaagat tgggagtggg agggaaaccc caaactcatt cctactaggc agtaagaatt
     1141 gaatgaattt tactaataaa aaaaatgaaa gtcaatcc
//
