LOCUS       NM_001168290            4129 bp    mRNA    linear   ROD 09-JUN-2024
DEFINITION  Mus musculus SURP and G patch domain containing 2 (Sugp2),
            transcript variant 1, mRNA.
ACCESSION   NM_001168290
VERSION     NM_001168290.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 4129)
  AUTHORS   Bedogni,F. and Hevner,R.F.
  TITLE     Cell-Type-Specific Gene Expression in Developing Mouse Neocortex:
            Intermediate Progenitors Implicated in Axon Development
  JOURNAL   Front Mol Neurosci 14, 686034 (2021)
   PUBMED   34321999
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4129)
  AUTHORS   Roberts,J.M., Ennajdaoui,H., Edmondson,C., Wirth,B., Sanford,J.R.
            and Chen,B.
  TITLE     Splicing factor TRA2B is required for neural progenitor survival
  JOURNAL   J Comp Neurol 522 (2), 372-392 (2014)
   PUBMED   23818142
REFERENCE   3  (bases 1 to 4129)
  AUTHORS   Mozhui,K., Hamre,K.M., Holmes,A., Lu,L. and Williams,R.W.
  TITLE     Genetic and structural analysis of the basolateral amygdala complex
            in BXD recombinant inbred mice
  JOURNAL   Behav Genet 37 (1), 223-243 (2007)
   PUBMED   17131200
REFERENCE   4  (bases 1 to 4129)
  AUTHORS   Taniwaki,T., Haruna,K., Nakamura,H., Sekimoto,T., Oike,Y.,
            Imaizumi,T., Saito,F., Muta,M., Soejima,Y., Utoh,A., Nakagata,N.,
            Araki,M., Yamamura,K. and Araki,K.
  TITLE     Characterization of an exchangeable gene trap using pU-17 carrying
            a stop codon-beta geo cassette
  JOURNAL   Dev Growth Differ 47 (3), 163-172 (2005)
   PUBMED   15840001
REFERENCE   5  (bases 1 to 4129)
  AUTHORS   Okazaki,N., Kikuno,R., Ohara,R., Inamoto,S., Aizawa,H., Yuasa,S.,
            Nakajima,D., Nagase,T., Ohara,O. and Koga,H.
  TITLE     Prediction of the coding sequences of mouse homologues of KIAA
            gene: II. The complete nucleotide sequences of 400 mouse
            KIAA-homologous cDNAs identified by screening of terminal sequences
            of cDNA clones randomly sampled from size-fractionated libraries
  JOURNAL   DNA Res 10 (1), 35-48 (2003)
   PUBMED   12693553
REFERENCE   6  (bases 1 to 4129)
  AUTHORS   Sampson,N.D. and Hewitt,J.E.
  TITLE     SF4 and SFRS14, two related putative splicing factors on human
            chromosome 19p13.11
  JOURNAL   Gene 305 (1), 91-100 (2003)
   PUBMED   12594045
REFERENCE   7  (bases 1 to 4129)
  AUTHORS   Stryke,D., Kawamoto,M., Huang,C.C., Johns,S.J., King,L.A.,
            Harper,C.A., Meng,E.C., Lee,R.E., Yee,A., L'Italien,L.,
            Chuang,P.T., Young,S.G., Skarnes,W.C., Babbitt,P.C. and Ferrin,T.E.
  TITLE     BayGenomics: a resource of insertional mutations in mouse embryonic
            stem cells
  JOURNAL   Nucleic Acids Res 31 (1), 278-281 (2003)
   PUBMED   12520002
REFERENCE   8  (bases 1 to 4129)
  AUTHORS   Araki,K., Imaizumi,T., Sekimoto,T., Yoshinobu,K., Yoshimuta,J.,
            Akizuki,M., Miura,K., Araki,M. and Yamamura,K.
  TITLE     Exchangeable gene trap using the Cre/mutated lox system
  JOURNAL   Cell Mol Biol (Noisy-le-grand) 45 (5), 737-750 (1999)
   PUBMED   10512203
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC124327.9, AK042293.1, AF518875.1 and BE981284.1.
            
            On Dec 10, 2019 this sequence version replaced NM_001168290.1.
            
            Transcript Variant: This variant (1) represents the longer
            transcript. Variants 1 and 2 both encode the same protein.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK042293.1, BC057305.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374, SAMN00849375
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-21                AC124327.9         93924-93944
            22-3307             AK042293.1         2-3287
            3308-3667           AF518875.1         3280-3639
            3668-4123           BE981284.1         10-465              c
            4124-4129           AC124327.9         120765-120770
FEATURES             Location/Qualifiers
     source          1..4129
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="8"
                     /map="8 34.15 cM"
     gene            1..4129
                     /gene="Sugp2"
                     /gene_synonym="mKIAA0365; Sfrs14; Srsf14"
                     /note="SURP and G patch domain containing 2"
                     /db_xref="GeneID:234373"
                     /db_xref="MGI:MGI:2678085"
     exon            1..448
                     /gene="Sugp2"
                     /gene_synonym="mKIAA0365; Sfrs14; Srsf14"
                     /inference="alignment:Splign:2.1.0"
     exon            449..575
                     /gene="Sugp2"
                     /gene_synonym="mKIAA0365; Sfrs14; Srsf14"
                     /inference="alignment:Splign:2.1.0"
     CDS             464..3667
                     /gene="Sugp2"
                     /gene_synonym="mKIAA0365; Sfrs14; Srsf14"
                     /note="splicing factor, arginine/serine-rich 14; putative
                     splicing factor, arginine/serine-rich 14;
                     arginine/serine-rich-splicing factor 14;
                     serine/arginine-rich splicing factor 14"
                     /codon_start=1
                     /product="SURP and G-patch domain-containing protein 2"
                     /protein_id="NP_001161762.1"
                     /db_xref="CCDS:CCDS22362.1"
                     /db_xref="GeneID:234373"
                     /db_xref="MGI:MGI:2678085"
                     /translation="MAARRMAQESLDSVLQEKSKRYGDSEAVGEALHLKAQDLLRTGS
                     RARADVYEDIHGDSRYSASGSGVYSLDMGREGLRGDMFVGPSFRSSNQSVGEDSYLRK
                     ECGRDLEPAHTDSRDQSFGHRNLGHFPSQDWKLALRGSWEQDLGHSVSQESSWSQEYG
                     FGPSLLGDLASSRRMEKESRDYDLDHPGEVDSVSRSSGQVLTRGRSLNIADQEGTLLG
                     KGDTQGLLGAKGVGKLITLKSMTTKKIPVASRITSKPQGTNQIQKPTPSPDVTIGTSP
                     VLDEIQFAALKIPLGLDLRTLGLPRRKMGFDAIDKADVFSRFGIEIIKWAGFHTIKDD
                     LKFSQLFQTLFELETETCAKMLASFKCSLKPEHRDFCFFTIKFLKHSALKTPRVDNEF
                     LNMLLDKGAVKTKNCFFEIIKPFDKSIMRLQDRLLKGVTPLLMACNAYELSVKMKTLT
                     SPLDLAMALETTNSLCRKSLALLGQTFSLASSFRQEKILEAVGLQDIAPSPAYFPNFE
                     DSTLFGREYIDHLKAWLMASGYPLQLKRAVPPESREQKTTAQTWASSTLSQAVPQRAD
                     HRVVDTIDQLVMRVIQGRLSPRERTLLLQDPAYWFLSDESSLEYKYYKLKLAESQRLN
                     HSWPIVERRPTPAQCAVRAMLYAQAVRSLKRRLLPWQRRRLIRSQGPRGLKAKKATTA
                     QQTSLSSGTRQKHHGRQASGSLRVKPPPRDSSDAAQDCLSEPAKPCPQPSSPGALGPS
                     PRPTGADDSEALPASSRCPSANMDAKTMETAEKLARFVAQVGPEIEQFSIENSTDNPD
                     LWFLHDQSSSAFKFYREKVLELCPSISFQSTGEAGDSVQSPTAGKEGKGEPQEGHPEQ
                     EASLEGTEVLPEEEEEDEEESEDEGGEETSTLRPQAGAAKCPGSEGSSPTDSIPGEGS
                     REDQASTPGLSQASSGSCFPRKRISSKSLKVGMIPAPKRVCLIQESKVHEPVRIAYDR
                     PRGRPIAKKKKPKDMEFSQQKLTDKNVGFQMLQKMGWKEGHGLGSLGKGIREPVSVGA
                     LSEGEGLGADGPEQKEDTFDVFRQRMMQMYRHKRASK"
     exon            576..2141
                     /gene="Sugp2"
                     /gene_synonym="mKIAA0365; Sfrs14; Srsf14"
                     /inference="alignment:Splign:2.1.0"
     exon            2142..2262
                     /gene="Sugp2"
                     /gene_synonym="mKIAA0365; Sfrs14; Srsf14"
                     /inference="alignment:Splign:2.1.0"
     exon            2263..2750
                     /gene="Sugp2"
                     /gene_synonym="mKIAA0365; Sfrs14; Srsf14"
                     /inference="alignment:Splign:2.1.0"
     exon            2751..2862
                     /gene="Sugp2"
                     /gene_synonym="mKIAA0365; Sfrs14; Srsf14"
                     /inference="alignment:Splign:2.1.0"
     exon            2863..3347
                     /gene="Sugp2"
                     /gene_synonym="mKIAA0365; Sfrs14; Srsf14"
                     /inference="alignment:Splign:2.1.0"
     exon            3348..3409
                     /gene="Sugp2"
                     /gene_synonym="mKIAA0365; Sfrs14; Srsf14"
                     /inference="alignment:Splign:2.1.0"
     exon            3410..3546
                     /gene="Sugp2"
                     /gene_synonym="mKIAA0365; Sfrs14; Srsf14"
                     /inference="alignment:Splign:2.1.0"
     exon            3547..4129
                     /gene="Sugp2"
                     /gene_synonym="mKIAA0365; Sfrs14; Srsf14"
                     /inference="alignment:Splign:2.1.0"
     polyA_site      4129
                     /gene="Sugp2"
                     /gene_synonym="mKIAA0365; Sfrs14; Srsf14"
                     /note="major polyA site"
ORIGIN      
        1 gcagaggcgc cgcctcgcct cggcgtccct ccttcagccg agaggctcct ttccggggca
       61 acgagggcga ccgcgagcac aggtaaagcg aagggagcca cagaatacgc gtgggcctga
      121 gactcttgca gtactctcaa tgctactcct aggtgtcgct tcccctcaaa agagatagtt
      181 ttcacctagg tagactcggc cctgagaagt gagcagcgcg cctgcgcgaa agagcgaaga
      241 tggctgccct cgacgcttgc gcatgaggac ctaggcggtg gcagccagcg cctgcgcacc
      301 aaggcaaggc agaggcttgc gcctgcgcga cgcggcgctg cggaaaccgt tggctcattt
      361 gcatctcccc gcctcgccag gcggtggata aggggcccga ggcggcggcg gcagcggcgg
      421 gggcggcacc gcacgcggca ggctccggga gaaaaaaaaa accatggcag caaggcggat
      481 ggcgcaggaa tctttggaca gtgtattaca ggagaaatct aaacggtatg gggattccga
      541 agctgttggt gaagctctcc atcttaaagc tcaagatctc ctaaggacag gctcaagagc
      601 cagagcagat gtctatgagg acattcatgg tgatagcagg tactccgcca gtggatctgg
      661 agtgtattca ctagacatgg gaagagaggg tctgagaggt gacatgtttg tgggaccctc
      721 cttcagatct agcaaccagt cggttggtga agacagctat cttcgcaaag aatgtggccg
      781 ggatctggaa ccagcccata ctgactcccg ggaccagagt tttggccacc ggaatctggg
      841 acattttcct tctcaggact ggaaacttgc gctccgtggc tcttgggaac aagacttggg
      901 ccactcagtt tctcaagaat cctcctggtc acaggaatat ggttttgggc cctcattgtt
      961 aggagacttg gcctcctcca ggcggatgga gaaggaaagt cgggattatg acctggacca
     1021 tcctggggag gtggactctg tgtctagaag cagtgggcaa gtcctgacca gaggccgatc
     1081 tctaaacata gctgaccagg aaggcactct actaggaaag ggggacaccc agggtctgct
     1141 tggagcaaag ggtgttggga agcttatcac actgaaaagc atgaccacga agaaaatacc
     1201 tgttgccagt cgtattactt ccaaacctca gggcactaac caaatccaga aacccactcc
     1261 aagtcctgat gtgaccattg ggacaagtcc agtgctagat gaaatccagt tcgctgctct
     1321 gaagattcct ttggggctgg accttaggac ccttggcttg cccagaagga agatgggttt
     1381 tgatgccata gacaaggcag atgtgttctc aaggtttggc atagagatca tcaagtgggc
     1441 aggattccac actatcaagg atgacctgaa gttctcccaa ctcttccaga ctctttttga
     1501 actggaaact gagacctgtg ccaagatgct ggcctccttc aaatgctcct tgaagccgga
     1561 gcatagagat ttctgctttt ttaccatcaa gtttctaaag cactctgctc tgaaaacgcc
     1621 ccgagttgat aatgagtttt taaacatgct tttagacaaa ggtgctgtga agaccaaaaa
     1681 ctgctttttt gagatcatca agcccttcga caagtccatc atgcggctcc aggaccgact
     1741 gctgaagggc gtcacaccct tactcatggc ctgtaatgcc tatgaactga gtgtcaagat
     1801 gaagaccctc actagcccat tggacctggc tatggccctg gagaccacca actctctttg
     1861 caggaagtcc ctggccctct taggccagac cttctccttg gcttcttcct tccggcagga
     1921 gaagatccta gaggctgtgg gcctccaaga catcgctcca tccccggcct acttcccaaa
     1981 ttttgaagat tccactttgt tcggaaggga gtacatagac cacctgaagg cctggctcat
     2041 ggccagtggc tatcccctcc agctcaagag agctgtgccc ccagagtccc gagaacagaa
     2101 aaccacagct cagacctggg cttcgagcac tctgagccaa gcagttcccc agcgggcgga
     2161 tcacagggtg gtggacacca ttgaccagct tgtcatgcgt gtcatccaag gaaggctatc
     2221 gcccagagag agaacacttc tcctacagga ccctgcttac tggtttctgt ctgatgagag
     2281 tagcctggag tataagtact acaagctgaa gttggcagag tcacagcgac tgaaccacag
     2341 ctggcccatt gtggagcgga ggccaacgcc cgcacagtgt gcggtgcgtg ccatgctgta
     2401 tgcacaagct gtgcgaagcc tcaagcgcag actcctccca tggcagcgca ggcggctgat
     2461 tcgctcccag ggtcctcgag gcctgaaggc caagaaagcc accactgccc agcagacatc
     2521 cctgtcctca ggcactcggc agaaacacca tggccgccag gcttctggct ccttgagggt
     2581 gaagccacca ccacgggatt caagtgatgc tgcccaggac tgcctatcag agcctgccaa
     2641 accctgtcct cagccctcca gccctggagc cttgggcccg tctcctcggc caactggagc
     2701 ggatgactca gaagccctgc cggcctcttc tcgatgcccc tctgctaata tggatgcaaa
     2761 gaccatggag actgctgaga agctggccag atttgtggct caggtcggcc ctgagattga
     2821 gcagttcagc atagagaaca gcactgacaa ccctgacctg tggttcctgc acgaccagag
     2881 cagctcagct ttcaagttct accgagagaa ggtgctggaa ctgtgcccat ccatctcctt
     2941 ccagtccact ggtgaggcag gggactcagt acagagcccc acagctggca aggagggtaa
     3001 gggtgagcca caggaggggc accctgagca ggaggcttca ctggagggca ctgaggtgct
     3061 gcctgaggag gaagaggaag atgaggagga gagcgaggac gagggtggag aggagacctc
     3121 cactctcagg ccacaggcag gagctgccaa gtgtccaggc tctgagggca gttcccctac
     3181 tgacagcatc cctggagagg ggtccaggga ggaccaggcc agcacccctg gcctgtccca
     3241 ggcctcctct ggcagctgct tccccaggaa gagaatcagc agcaagtcgc tgaaagttgg
     3301 catgatccct gccccaaaga gggtgtgtct catccaggag tcaaaggtcc acgaaccagt
     3361 tcgaattgcc tacgacaggc ctaggggtcg tcccatagcc aaaaagaaga aacccaagga
     3421 catggagttt tcccagcaga aactgacaga caagaacgtg ggcttccaga tgctgcagaa
     3481 gatgggctgg aaggaaggcc atggcctggg ctcccttggg aagggcatcc gagagcccgt
     3541 cagtgtgggt gctctttcag aaggagaggg cctgggagct gatgggcctg agcagaaaga
     3601 agacaccttt gacgtcttcc gccagcgcat gatgcaaatg tacagacaca agcgggccag
     3661 caaataggtg tgtgccagga cgcagaccag cagctgatgc taccagaaag aaaatctgag
     3721 taaggcagga gggccattcc tgccatgtgc cacatgctcc tgttcaggca cgcaggggag
     3781 gaagctcctc aacagaaggg tagcttacta gccccagccc tcccaccctc cctccagtgc
     3841 ctctgcctgg atttgagcat gctgtcatgg gactgggcca ccctcggcct tacctgtttc
     3901 tactccaggt ttctctcgaa gatgacagtt ccttgcaggg gccaaacagg atagacttga
     3961 tgagtggcct tgctcagcca ccacactcct tcctgagggc ctcaagtgct gttttgtgag
     4021 gggtctatag gcctcatcct tctcactctt ggttttttgt ttttacttgt attgtgtgta
     4081 tgtgagtgag caggtgtgtt acggtgccca taagaagagc aaaggacaa
//
