LOCUS       XM_030250999            1987 bp    mRNA    linear   ROD 07-FEB-2024
DEFINITION  PREDICTED: Mus musculus syntaxin 5A (Stx5a), transcript variant X2,
            mRNA.
ACCESSION   XM_030250999
VERSION     XM_030250999.2
DBLINK      BioProject: PRJNA169
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000085.7) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Sep 21, 2020 this sequence version replaced XM_030250999.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001635.27-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/01/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1987
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6J"
                     /db_xref="taxon:10090"
                     /chromosome="19"
     gene            1..1987
                     /gene="Stx5a"
                     /gene_synonym="0610031F24Rik; D19Ertd627e; Stx5"
                     /note="syntaxin 5A; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 8 mRNAs, 120 ESTs, 847
                     long SRA reads, 10 Proteins, and 99% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     48 samples with support for all annotated introns"
                     /db_xref="GeneID:56389"
                     /db_xref="MGI:MGI:1928483"
     CDS             348..1415
                     /gene="Stx5a"
                     /gene_synonym="0610031F24Rik; D19Ertd627e; Stx5"
                     /codon_start=1
                     /product="syntaxin-5 isoform X1"
                     /protein_id="XP_030106859.1"
                     /db_xref="GeneID:56389"
                     /db_xref="MGI:MGI:1928483"
                     /translation="MIPRKRYGSKNTDQGVYLGLSKTQVLSPATAISSSSDSTPLPTP
                     VALVPSPPDTMSCRDRTQEFQSACKSLQSRQNGIQTSKPALHAARQCSEFTLMARRIG
                     KDLSNTFAKLEKLTILAKRKSLFDDKAVEIEELTYIIKQDINSLNKQIAQLQDFVRAK
                     GSQSGRHLQTHSNTIVVSLQSKLASMSNDFKSVLEVRTENLKQQRNRREQFSRAPVSA
                     LPLAPNNLGGGPIILGAESRASRDVAIDMMDPRTSQQLQLIDEQDSYIQSRADTMQNI
                     ESTIVELGSIFQQLAHMVKEQEETIQRIDENVLGAQLDVEAAHSEILKYFQSVTSNRW
                     LMVKIFLILIVFFIIFVVFLA"
ORIGIN      
        1 aggtgggact tcctgtttca aataaacact tttaagaggg ttttttcgcc tccccctccg
       61 ccctccgaag tgtgtccacc tctggagatc ggttgctgtt ttctgtgaga gggggaagga
      121 aatcacgtat accaaaggca ggattgagac ctgggctaac tgcaaaggtc tgcctggaag
      181 ttcagggccg caggaccagg ctgtggctgt tttctcgact ttaggggccc cggccggagc
      241 tctggcagtc agagccaagt cggaaggaga ctctgaggag gcttcgcctt gggcctggag
      301 gaagctgacc gttctcgccg tgtccaggtc tgaggttatg cgactcgatg atcccgcgga
      361 aacgctacgg atctaagaac acggatcagg gtgtctacct gggtctctca aagacacagg
      421 ttctgtcccc tgcaactgct atcagtagca gcagtgacag cactcctttg cccactccgg
      481 tggccctggt cccctcccct cccgacacca tgtcctgccg ggatcggacc caggagttcc
      541 agtctgcctg caagtccctg cagagccgtc agaatggaat ccaaacaagc aaaccggctc
      601 tgcacgcagc ccgacagtgc agtgaattta ccctcatggc caggcgcatt gggaaagatc
      661 tcagcaatac atttgccaag ctggagaagc taacaatctt ggcaaagcgc aagtccctct
      721 ttgatgataa agcagtagaa attgaggagc taacatacat catcaaacag gatatcaata
      781 gcctcaacaa acaaattgct cagcttcaag attttgtgag ggccaagggc agccagagtg
      841 gccggcatct gcagacccat tctaacacca ttgtggtttc gttgcagtca aagctggctt
      901 ctatgtccaa tgacttcaag tcagttctag aagtgaggac tgagaatctg aaacagcaga
      961 ggaaccgtcg ggaacagttc tccagggcac cagtgtcagc cctgcctctt gcccccaaca
     1021 accttggagg tggtcccata attttgggag cagagtcccg agcttccagg gacgtggcta
     1081 ttgacatgat ggaccctaga acaagccagc agcttcagct cattgatgag caggattcct
     1141 acatccagag tcgggcagac accatgcaga acattgagtc tacaatcgtt gagctgggct
     1201 ccatttttca gcaattggca cacatggtta aagaacagga ggaaacgatt cagaggatcg
     1261 acgagaatgt gcttggagcc cagctggatg tggaggcagc ccattcagag atcctcaagt
     1321 acttccagtc agttacctcc aatcggtggc tcatggtcaa aatcttcctc atcctcattg
     1381 tcttcttcat catctttgtg gtcttccttg cctgaaccct cctccctcat tctgagccac
     1441 tccatggagg gcttgggatc ctcctgggag gacaggtggc tactattgcc actgagcctg
     1501 tgcaaggtgg ttgggagaaa ggccatttcc ttggaactgc taagaatggc cagtgtccct
     1561 gattccccac ccttgtctct ggccactctg tcctatcctc aggcccatga aacacactgg
     1621 ttctggattt ggactctgct gtgaagaggc tgggaacaga agccagctag gggccagtgg
     1681 gggaggttgt ctccaccttg agatttttat aagcctataa ccagcctccc ccaaacgtaa
     1741 ctggcagcaa gaggagaaaa cgcccttcct tcttgagagg caagaatcct caagaagtat
     1801 ccaagggacc aacttcatca tctgggtcag ctagaacttg actgccgcct tctcctcacc
     1861 atgtgaggtg agggggctct gagccctaca gttgcctgca caaacctgac tttggctact
     1921 ggtgactctc aatatgccaa acatgctgca gcctatttcc tcccaattac agcaagactg
     1981 tcagcct
//
