LOCUS       XM_006507541            4430 bp    mRNA    linear   ROD 07-FEB-2024
DEFINITION  PREDICTED: Mus musculus syntaxin 4A (placental) (Stx4a), transcript
            variant X3, mRNA.
ACCESSION   XM_006507541
VERSION     XM_006507541.4
DBLINK      BioProject: PRJNA169
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000073.7) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Sep 21, 2020 this sequence version replaced XM_006507541.3.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001635.27-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/01/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4430
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6J"
                     /db_xref="taxon:10090"
                     /chromosome="7"
     gene            1..4430
                     /gene="Stx4a"
                     /gene_synonym="Stx4; Syn-4; Syn4"
                     /note="syntaxin 4A (placental); Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 49
                     ESTs, 343 long SRA reads, and 99% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     47 samples with support for all annotated introns"
                     /db_xref="GeneID:20909"
                     /db_xref="MGI:MGI:893577"
     CDS             1380..2555
                     /gene="Stx4a"
                     /gene_synonym="Stx4; Syn-4; Syn4"
                     /codon_start=1
                     /product="syntaxin-4 isoform X3"
                     /protein_id="XP_006507604.1"
                     /db_xref="GeneID:20909"
                     /db_xref="MGI:MGI:893577"
                     /translation="MRDRTHELRQGDNISDDEDEVRVALVVHSGAARLGSPDDEFFQK
                     VQTIRQTMAKLESKVRELEKQQVTILATPLPEESMKQGLQNLREEIKQLGREVRAQLK
                     AIEPQKEEADENYNSVNTRMKKTQHGVLSQQFVELINKCNSMQSEYREKNVERIRRQL
                     KITNAGMVSDEELEQMLDSGQSEVFVSNILKDTQVTRQALNEISARHSEIQQLERSIR
                     ELHEIFTFLATEVEMQGEMINRIEKNILSSADYVERGQEHVKIALENQKKARKALGET
                     ETQLLWRWGRPPTEPVRTLDLVQRACGSSWVGSCSFMESSPGVLHNACETVFNVLFVW
                     DTWFCKKFKKKKKKKKERKKRIRRSLEPAVQCVLERLAQASSIHSPSAWPWLTPALV"
ORIGIN      
        1 caggcggatt tctgagttcg aggccagcct ggtctacaga gtgagttcca ggacagctag
       61 ggctacacag agaaaccctg tctcgaaaaa caaacaaaca aacaaacaaa caaacaaaca
      121 aatctgggga aatggcaccg tgagagaagc gtaaagaaga tcaggaagcc acgggcttta
      181 gtttcaaata caggaaaggc tactattcgg atcaaatctt ctatgcagga ctgctatgtg
      241 gcagctaccg aatttggtgt tggggattcc gttaaagaaa agcaagtcat gctgagacgt
      301 cagctgtaag gcagggctgc ggaggtaaca gtacattttt ctcagtctga gctgctctgg
      361 aattgtcgtg ctgctcagaa ggtagcgagc tcagcgggac tgcaatgctc actcggggca
      421 taggccgccc acctgtcaga ggctgtgcca ggaggacgcg ggggagcagc ggggggagcg
      481 ccaccttggc tgaggtcact tcccaccccc agattctctg cctacaaaac cctgcaattc
      541 cctgacgctg gagactcggg tcttattatt tcctgatttc caaggtctca tgatactgac
      601 agccccaaat gcaagtcttc actttgccca cgcccgagga cccaaaatta aaacaacaaa
      661 aaagtgaatt ctacagagca tccttagtag gtggctgaga gtaggcagtg tacccttccc
      721 cacctcgaag aagctgttgg ggcacagctc agacgctggg gtgtcgggga cgtcgcgaga
      781 ctgaagcccg agacgtcgct gacaggccgg aacacatgac tggcggtcgg gcgtgcagcc
      841 cgcggagctg ggcccggcct gtcacgtgat gagggggcgc catggggtga tgtgagatac
      901 gaggctctca gactgcgtgc aaatgacgca ttcccaaccc tttgggcaac tagatctcgg
      961 ctccaatatg agatgttccg gtagtggggg gggggggagc agcggggcgg gctctggact
     1021 caggcagcct cgcttccgtt cggctgccac tgcttccgac ctccgccttt ccctctagcg
     1081 aggacgagcc gagccctcgc gcgcatgctc ggagtcatcc cccgaggggc ggggcggcag
     1141 ctgcgggagc aggatggggg gaagagaagg gaattccaac ctgtagaact ttgggggtcc
     1201 tatgatcggg ttcttcccca cgactgtgga tggtgaaagg ggtggggcct ttggcggctc
     1261 cggggtgtac tggagttcgc tgggtgaggg agggggtgtc aagtgtgaga gaggtgcagg
     1321 acttccaaat ttagaacctt gaggcccttt gggctcgggt ccagggcact ccgaccacca
     1381 tgcgcgacag gacccacgag ttgaggcagg gggataacat ctcagacgat gaagatgagg
     1441 ttcgagtcgc gctggtggtg cactcaggtg ctgcccggtt gggcagcccg gacgacgagt
     1501 tcttccagaa ggtgcagaca attcggcaga ctatggccaa actggagagt aaagtccggg
     1561 agttggagaa acagcaggtc accatcctgg ccacgcctct tcccgaggag agcatgaagc
     1621 agggcctgca gaacctgcga gaggagatca aacagctggg gagagaggtc cgggcgcagc
     1681 taaaagccat agagccccag aaggaggaag ctgatgagaa ttacaactca gtcaacacaa
     1741 ggatgaagaa aacccagcat ggagtcctgt cccagcaatt tgtcgagctc atcaacaagt
     1801 gcaactcaat gcagtccgaa taccgagaga agaatgtgga gcggatccgg aggcagctga
     1861 agatcaccaa tgctggaatg gtgtctgacg aggagctgga acagatgctg gacagtgggc
     1921 agagtgaggt gtttgtgtct aatatcctga aggacacgca ggtgactcgg caggccctga
     1981 atgagatctc tgcgcggcac agtgagatcc agcagttgga gcgcagtatc cgagagctcc
     2041 atgagatctt tacgtttcta gctacggagg tggagatgca gggggagatg atcaaccgca
     2101 tcgagaagaa catcctgagc tcggccgact acgtggaacg tgggcaagag cacgtcaaga
     2161 tagccctaga gaatcagaag aaggcgagga aggcattggg agagacagag acccagcttt
     2221 tgtggaggtg gggcaggcct ccaactgaac ccgtccgcac actggacctt gtgcagaggg
     2281 cctgcggctc gtcctgggtt ggcagctgct cattcatgga gtcctcccct ggagtcctcc
     2341 acaatgcctg cgagacagtt ttcaatgtcc tgtttgtctg ggatacatgg ttttgtaaaa
     2401 aatttaaaaa aaaaaaaaaa aaaaaaaaag aaagaaagaa aagaataaga agaagcttgg
     2461 agccagctgt gcagtgtgtt ctggaaaggt tggcccaggc ctcaagtatc cattctcctt
     2521 ccgcctggcc atggctgacg ccagctctgg tctagacagg ctcaggtcag acttctctag
     2581 aagagcatct aagggtgggc aaggtgggcc agggagaggc agcactcaca gctgggacat
     2641 gggtaaggtg tgtatgtgag agatacaggg gcattcctga caccaagagg aagagacatc
     2701 ttgagaaaca cttcagcaga caggaagaac aattctcagt acggacagtg tttaggtgga
     2761 atgttaagat gtaatggaga caggcaggca gcataagaag ttccctagca gaggaaccag
     2821 ctggccaggt cccatgaccc gagatgagca ctgccttttg ttaagaggag tttttagaga
     2881 cccatcaccc tgcagtggct gcttggttta taggaattat ccagtggagg cagacagagg
     2941 agcctggaac ctggtttttc acaaggcaca tgagctacaa gctctgattc tgtttcaaga
     3001 cccagcctag tctacatagt atattccagg ccattcaagg ccattgaggg tggatggagg
     3061 gagaaatgat tgagtagcct ggcatggtag tacaccttta atcctaacac tctggaggca
     3121 gtgggtgaat ctttgtgagt tcaagaccag cctggtatat atagtaagct ccaggacagc
     3181 aggactacgt gtgtgtgtgt gtgtgtgtgt gtgtgtgtgt gtgtgtacag atacacatgc
     3241 atgcagaggt caactttggg gcataggtta tcttctattg tggctaccag agtcaagctt
     3301 gggctgggag gttggtgtgg caagtgattg gccctgatta tgaattttga atggcttcta
     3361 gtgcagatgc ctagtttcca gagaaggata tagcttttta ctgtggccac atggctcaga
     3421 agctgcccct ggcccaggct tggttagtca gtggtctttg gcgtcagact ccaaggctct
     3481 ccatcctact ttcaacccca tgatactcca cagtcttgaa agggctagat gtgtcaggct
     3541 actgcactcc caagctattt caggagggac tccttcctgc ctgcttcatc tggccagggg
     3601 agattacatg cctcttgctg tctatatata ggatgtatat atagacatta actgggaaac
     3661 aactggtcag agagcctagg ttttttcctc cctcagcata aagtggctca ttttaggaag
     3721 tggatatgtg ctgggcgtca catggagtct ccagacacac ccaaaaaaag tagtagaatc
     3781 actactgcta aggcaaagca acgacgggtg tggtgcactc tggaggcaga gcaggaggat
     3841 ctctgtgagt tcagggcagc ctggtctaca gagttaattc tagggcgaca cagagaaacc
     3901 ctggagacag acagacaggc agacagatgg acaggcaagg ggaatcttca gatggacaga
     3961 caaaagtgaa agactttggg tttgtgggga acggtactgg gagtgagtca gggaagaggc
     4021 tttatcccct gggatgggca gatgctaact agctgaccaa gctgggtggg gcagctggga
     4081 accaggggca tcttggctga acactgcatg tatttggctc tggggactct gggcttccct
     4141 gttttccatc tcttttctct ccaaggcctc catttccagc agactcttgg cctgtcagcc
     4201 acctttgtcc actttcttac actgccttca aagtaaaaca caggacacca actgacctga
     4261 tacagatgtt gggcatcaac atctgtgcag caatgtctgt ctctaaagtg tattgtttta
     4321 tttgcttgtg tacacatgtg tggagatcag agaatgactc aaacgactct agttctctcc
     4381 ttccacgggg tgggacccca ttgagctcaa gttgccaagc ctggaggcaa
//
