LOCUS       NM_001081227            6557 bp    mRNA    linear   ROD 01-JUN-2024
DEFINITION  Mus musculus mechanosensory transduction mediator (Stum), mRNA.
ACCESSION   NM_001081227 XM_484946
VERSION     NM_001081227.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 6557)
  AUTHORS   La Manno,G., Siletti,K., Furlan,A., Gyllborg,D., Vinsland,E., Mossi
            Albiach,A., Mattsson Langseth,C., Khven,I., Lederer,A.R.,
            Dratva,L.M., Johnsson,A., Nilsson,M., Lonnerberg,P. and
            Linnarsson,S.
  TITLE     Molecular architecture of the developing mouse brain
  JOURNAL   Nature 596 (7870), 92-96 (2021)
   PUBMED   34321664
REFERENCE   2  (bases 1 to 6557)
  AUTHORS   Desai,B.S., Chadha,A. and Cook,B.
  TITLE     The stum gene is essential for mechanical sensing in proprioceptive
            neurons
  JOURNAL   Science 343 (6176), 1256-1259 (2014)
   PUBMED   24626929
REFERENCE   3  (bases 1 to 6557)
  AUTHORS   Nakano,Y., Jahan,I., Bonde,G., Sun,X., Hildebrand,M.S.,
            Engelhardt,J.F., Smith,R.J., Cornell,R.A., Fritzsch,B. and Banfi,B.
  TITLE     A mutation in the Srrm4 gene causes alternative splicing defects
            and deafness in the Bronx waltzer mouse
  JOURNAL   PLoS Genet 8 (10), e1002966 (2012)
   PUBMED   23055939
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            DN174476.1, AK031805.1, AC121838.2 and BY637651.1.
            
            On Mar 15, 2011 this sequence version replaced NM_001081227.1.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK031805.1, DN174476.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849375, SAMN00849376
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-601               DN174476.1         1-601
            602-1025            AK031805.1         566-989
            1026-6454           AC121838.2         11850-17278
            6455-6557           BY637651.1         318-420
FEATURES             Location/Qualifiers
     source          1..6557
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="1"
                     /map="1 84.34 cM"
     gene            1..6557
                     /gene="Stum"
                     /gene_synonym="6330403A02Rik; Gm10001"
                     /note="mechanosensory transduction mediator"
                     /db_xref="GeneID:381310"
                     /db_xref="MGI:MGI:2138735"
     exon            1..377
                     /gene="Stum"
                     /gene_synonym="6330403A02Rik; Gm10001"
                     /inference="alignment:Splign:2.1.0"
     exon            378..557
                     /gene="Stum"
                     /gene_synonym="6330403A02Rik; Gm10001"
                     /inference="alignment:Splign:2.1.0"
     exon            558..566
                     /gene="Stum"
                     /gene_synonym="6330403A02Rik; Gm10001"
                     /inference="alignment:Splign:2.1.0"
     exon            567..6557
                     /gene="Stum"
                     /gene_synonym="6330403A02Rik; Gm10001"
                     /inference="alignment:Splign:2.1.0"
     polyA_site      1795
                     /gene="Stum"
                     /gene_synonym="6330403A02Rik; Gm10001"
                     /note="major polyA site"
     polyA_site      2272
                     /gene="Stum"
                     /gene_synonym="6330403A02Rik; Gm10001"
     regulatory      6522..6527
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Stum"
                     /gene_synonym="6330403A02Rik; Gm10001"
                     /note="hexamer: AATAAA"
     polyA_site      6549
                     /gene="Stum"
                     /gene_synonym="6330403A02Rik; Gm10001"
ORIGIN      
        1 cccggagtgg gggcgtggag cgcgggaggg cgggcttctc cgccagcctc gcagcacccg
       61 gagcgcactg gcctcctgag aagggcgcat agcgcgctgc caggagcccg cagccggccg
      121 ccgtctgccc tggtgccccg ggcggctgca gggttcctgg agagcgcgtc cagccatgga
      181 gcctttgcac aaagacgccg agaccgcggc ggcggcggcg gctgtggcag cggcagatcc
      241 ccggggggca tcgtcgtcca gcggggtggt cgtgcaggtt cgcgagaaga aggggcccct
      301 gcgcgccgcc atcccctaca tgcccttccc ggtggctgtc atctgtctct tcctcaacac
      361 tttcgtgccg ggattgggta cattcgtctc ggcattcact gtgctgtgtg gggcacgcac
      421 cgacctcccg gacaggcacg tgtgctgcgt cttctggctg aatatcgctg cggccctcat
      481 tcaggtgctc acggccatcg ttatggtggg ctggatcatg agcatcttct ggggcatgga
      541 catggtcatc cttgccatct cccaagggta caaggatcag ggtatcccac aacagctgtg
      601 agcctacagg acctgcgggg gaagtccagg gtcctgtgag ggccacgcca ggtggctcta
      661 ggcacaagga ccttcatata ttctcttctg ccatttctca gattggggta gaaagggagt
      721 acttacaaaa tactatttat tttgggaagc acacctgctt ttcttagcag gctccaaggc
      781 taacttctct ccctgctcca gagcgcacag gaggaacagg cccagaacat cagactgggc
      841 tagaggcagg atagtgccag tgccagggat actgggcatg cttatccaac tacacactga
      901 ataggcacca agacctgtca ggctgggctg ctgtaggtca catgcaggtg atcagtcact
      961 ctcctaggcg tcaggacttc acggaacact tcctctgggt cctcacgccc tgcttgacca
     1021 catggttccc tgtatttgct cggtggtctc ccaggggcag tgtcagggtg gggttgccag
     1081 tgtggaaagg ccaggtgata gcctagtgtg taaaaaattc ttaggttccc ccaggagtct
     1141 gataacaccc cagtgttcga gttgttgggt gtgactttgt gatttgactg ggggtagtgg
     1201 ggaggtggca cccactctac ttctggaatg ctactgttag tatctgaatg tttatatgca
     1261 aaatgaccag accaagctat gaatggctgc agaccagcag ccctcttgga tatatttact
     1321 atggtctctc gtcccctctc ctttttttcc ccctgacatg catgtgtttc tgaatccaga
     1381 tggtttgttt tgaggaagat gatggaatcc gtttgttact gtttcttgac atcccagtgg
     1441 agtctgggct tcccacccat tgccaaacac gtggatatca ctcgagaatc ctgtgaatag
     1501 tcagatgcac tgggactcat gaaatgtaaa tagccttgcc caagcaagtc ctgggggacg
     1561 ttggagactg gactgcattt gaaccgtgag acctgcagag tgacatcatc aggttgggga
     1621 ctttgacctg aagttcatgt gtgctgcaag aagacgcatc gtgaggctga agttgttggc
     1681 ggggcatgtg cccctttaag cagcaaacct gggactgatc agtacagagc cagatcctta
     1741 ctaggcagag caaacatcag gaagtgggaa ggtaccgata tgaaattaag agaaaggccg
     1801 actcaaactg atggcgtccg ggtggctact tacatctctc tccatcttat tctaacatag
     1861 gaagaactaa catgtgggac agacccaggg ctcagttccc ggtcatgctg gccttgagcc
     1921 atcagtgggt ccctcatcat ctgcctgaaa ctctgtcaca gtgtggccag ggctaaagaa
     1981 aggagccgtc cactttctgc cttggtggat ggaggctctt gaaaagcagc tcctgtttct
     2041 ctggggttcc aagaccccac cccaccccac cccaccccac cccaccccac cagccttctt
     2101 aattgcaatc tttagaagtc cgacatcatg aagagatgga gtcccatgat gtactcattt
     2161 ctggccctga ctctgggctg gctcgcctgc cctaccctgt gtctatccat cagtttcttc
     2221 caaggctgtg tgggaacgag ttgtaccttt ggaacacctg ccaaggggtc tagttcttcc
     2281 tgtgtttctt tctgttgctc tgtttgttct cagcccctgt cttggggtac ggggccaggc
     2341 ttggttctct ccacagcaga tcactgctcc caaggaggct acctctggta gcaaagctgt
     2401 accagaaagg ggactgatgg gtcagtgtgc cctcccacga tgtccgccca cagcccttca
     2461 tcccacagag ctagtgatga caggcctggc aagagcggcc cccacagcga gggagaagtc
     2521 tatttccctg gcttctgctg ggggtggcta ccgggggagt tggaaggaga tggtaatttg
     2581 tattgcttgt ttagtgacat gaaccagact cgagtgggac tttcctgagt gacaagtgtc
     2641 accatgagtt ctagtgtggg atggcttaat acaggggctt gtgagcttgg gaagctgttt
     2701 cctccctagc accccctcat tccaggtgga tggtgtgggt agactttagg agcccccaga
     2761 acagtgagtc tgaggggtgc tactagctcc aagcatcagc cccctgggcc aggcctgatt
     2821 agcataacca ttctcagccg atagacagtg gctaattcac tcctcacagt ccaagcaggc
     2881 cattggttct aggtgaccag agttcattta ctgaacacca gctatctaga aagcagggct
     2941 ttggacccag aaagcgctta gtggcaccag ggctccttag tgacaaagct gcctgggtgg
     3001 catagctcag ggctgctgtc ccaaccttgg gaaataactc agaagaccat gccctggcta
     3061 tgagtgccag gggcagacat cacaggcaca cagagaaaat ccacagagac tgtggcactg
     3121 ccaggatcta atgtggcatt gttatcagag tggccattcc ttctaccaaa ccaggaccct
     3181 ggagcaagag agaggaccag gtagcctact gtcgtagctc catttctgtt gctgtggtaa
     3241 aataccctga ccaaaaagca acatgcacca ggaaagagga aagttggttt gtttggttta
     3301 taatctagcc tatgtacagt ccatcgtagg gaggagtcat gatggcagga actagaagtg
     3361 cctaagtcac tacatccaca gtcaacagca gagaaacaaa tgcatccatg ctgtccatgc
     3421 tcccccaccc ccaaccagtt tcatgtactc ttaaaaagtc caagatccag cccacgaaat
     3481 tcagggtgga tcgtctcact tccattaaac aaataagata atcctccaca ggccaatcta
     3541 atctaaaata attcctcttt aagacttccc tggtgattct aggttttgtt acgttaaaac
     3601 tattcaacac tgtgtagtgt attttaggga ccattgagga ccccagactg cggccaggaa
     3661 gccactatga gatgacccac cccccaccct cagactgcca aatcttgcct gggtcaagtc
     3721 tctggctgcc ctggagagaa gcaaaggaag tgatgagggc acggtctact ccctgcctcc
     3781 gtggccctga cctgtgtcta gccccagcga cccgccccca aagggggcgt ggcccaggtg
     3841 ccgctcagct cagttcatct gctgttctgt gagcaacctg tggggagttt ttgttaagct
     3901 ttcacaagga gaccagaggc ttctccctga gacacatacc tctcagaagt cacagggagg
     3961 gatgatgaac gtcctccgaa ggatgagagc agtatttctc catggccctc ctgaatcctt
     4021 gagctcaccc gcccccctgg cttctgcagg tcccgaatgg aagatggaag cagatggcag
     4081 ctcaagacag agtcggtgcc cggagctgcc tggctcatgg gatctaggtc ctacactccc
     4141 tcacaggacc gaggctgcaa atcgtggggt gtaggatgct gggggctgag gagcagcggg
     4201 gagaactcag ctataggaga cataggaagc caattagcta catggttagc acgtccccta
     4261 gacggaaaag gattaagatg tgcaaaagaa aagccatcca cacatcgggt ctaaggccag
     4321 catagagtgg gctgaaaccc caagaccaga aaaatccccc caaaggccca agggtcctga
     4381 agcaagaaag agattgaatg agtgttcctt tgaccttaag attaaaaatg caaggcctta
     4441 gtgatggtaa atgacctgca tgaagaaagc tgggactgtc tgttctgtgg ttggagaggg
     4501 cttggactta gagaaccagc tggccactgc atctcctact cccaggcaga agcgcgtcgg
     4561 attgcagagc aaggtttccc tctagtggaa gcagggagcc aggataccat ctgccagccc
     4621 tgggatgagg ttcactccct gtgctgtgag ggaggctctg cagttagcaa gcgttctttc
     4681 agtgctaaag tgctcaggtc ctgagctcag atcaaagatg ccctgtaggt cacatcccta
     4741 cagtatccag cctccaccag tgacagcaag ctcgggaaga ccttttcttc acctaccagg
     4801 agctctgtct cctgctagag agttctgtgc ccaggtagta gaggatgtgg aggtcatctt
     4861 ggacagtggt attgtgaaga ggtcatctaa gtggtgagca agggacttag agtcttcttc
     4921 atctttcttc ctgttagttt ctgagagctg aatgctcaca gaggcagtgt atacttccac
     4981 tcagagtatg acccagcctc aatcccacga tgcaccagga cacaatgaat cccaaccaga
     5041 gtggtcctgt gcatcccatc agagtgacta cagtcttgtt acagcaatgc ccttccattt
     5101 aactatctac agtatagaaa tcaggccagt ccgtcatttc ccccaacctt gccaaagcca
     5161 agagtctaga gagtccaagc ccagtcaagc acagccccac tgggagagcc cagactcttc
     5221 ctggcaaaaa caaacactag ttcggtatgc cacaaccccc caagggagac taaagaaatg
     5281 actccactaa agttaagtct gggacccagt gagtctatgg agcattggtg actcttggta
     5341 agctatgtca ctgagaagcc cccaccccag tgtggggaca actcaaagcc acaaaactgc
     5401 tgtcctcacc ctggccagtc acccctcctc aactccgtcc actgtgcaca ccggttgccc
     5461 tctcctgggg tctgtgggat cagaattccc actgcatccc cctatccaga gctactgcag
     5521 ccccccggct ccggattggt ctgctggtgt gggggagggg cagagacctc ttcctgacgc
     5581 ttttctgcga ctctggcagg atttttattt ctgaacgagt acactgcctg ccccagccca
     5641 ggagccagca aggagtagag gagggggcaa gttttaagca gagacaaatg acgttggggc
     5701 ttgtgagaat cccgcgattt cctgtggagt agtcgcgggc tcttcccggg ctggctccct
     5761 tgcacccggg agctcttttg ttttggaaga tgctggcagc atcactgtat taagagcagg
     5821 ccgcgttgtg ttgtggatta ctgttttggt gttgccgttg gcttttgtct gttaaattaa
     5881 ctgctgtaca ttttcttgtt ctctgacgac atcgggggct tacttttctc actccttctc
     5941 acagggaccc catatgccca agtccaagca caggtggggg gtggagggcg ggtggggggt
     6001 ggagggcggg cgggtggggg cccgggggta cggaggcatt gccagcccat tctaaagatt
     6061 acaagtgttc ttggagactg ctcggactat ctcagccctt ggaaagattc tagactttcc
     6121 tggcttaaac tgaagcatgg ggcccaggtt tgacttttgc ttaattttct cagtgtcccc
     6181 aggcttgagt ccccaccctt gttttggggt ccacagagcc ccgcaggggt agtgcagggc
     6241 tcccgcttct cctccagcct tctgccagct ttgaagacct tccttccagc aatgctactg
     6301 tacacgtggt gaggaacgcc acccgcaaca aagctcgtgt acatatctcc gtgtacatac
     6361 ggagtgtaca tacatacata cataatacag tgtacataca tatagtgccc cgtgttataa
     6421 agataacaga gcatggcatt tctttggcat tccaattttt tttaaccctt ggaaatatgg
     6481 ttttggcaat cttttattct tctttttcct cttttctatt taataaacat ccatgtgacc
     6541 ttcctggtag cttcttg
//
