LOCUS       NM_153563               3215 bp    mRNA    linear   ROD 13-FEB-2025
DEFINITION  Mus musculus striatin interacting protein 1 (Strip1), mRNA.
ACCESSION   NM_153563
VERSION     NM_153563.3
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 3215)
  AUTHORS   Rehmani,T., Dias,A.P., Applin,B.D., Salih,M. and Tuana,B.S.
  TITLE     SLMAP3 is essential for neurulation through mechanisms involving
            cytoskeletal elements, ABP, and PCP
  JOURNAL   Life Sci Alliance 7 (12), e202302545 (2024)
   PUBMED   39366759
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3215)
  AUTHORS   Bazzi,H., Soroka,E., Alcorn,H.L. and Anderson,K.V.
  TITLE     STRIP1, a core component of STRIPAK complexes, is essential for
            normal mesoderm migration in the mouse embryo
  JOURNAL   Proc Natl Acad Sci U S A 114 (51), E10928-E10936 (2017)
   PUBMED   29203676
REFERENCE   3  (bases 1 to 3215)
  AUTHORS   Lant,B., Yu,B., Goudreault,M., Holmyard,D., Knight,J.D., Xu,P.,
            Zhao,L., Chin,K., Wallace,E., Zhen,M., Gingras,A.C. and Derry,W.B.
  TITLE     CCM-3/STRIPAK promotes seamless tube extension through endocytic
            recycling
  JOURNAL   Nat Commun 6, 6449 (2015)
   PUBMED   25743393
  REMARK    Publication Status: Online-Only
REFERENCE   4  (bases 1 to 3215)
  AUTHORS   Munton,R.P., Tweedie-Cullen,R., Livingstone-Zatchej,M.,
            Weinandy,F., Waidelich,M., Longo,D., Gehrig,P., Potthast,F.,
            Rutishauser,D., Gerrits,B., Panse,C., Schlapbach,R. and Mansuy,I.M.
  TITLE     Qualitative and quantitative analyses of protein phosphorylation in
            naive and stimulated mouse synaptosomal preparations
  JOURNAL   Mol Cell Proteomics 6 (2), 283-293 (2007)
   PUBMED   17114649
REFERENCE   5  (bases 1 to 3215)
  AUTHORS   Ballif,B.A., Villen,J., Beausoleil,S.A., Schwartz,D. and Gygi,S.P.
  TITLE     Phosphoproteomic analysis of the developing mouse brain
  JOURNAL   Mol Cell Proteomics 3 (11), 1093-1101 (2004)
   PUBMED   15345747
REFERENCE   6  (bases 1 to 3215)
  AUTHORS   Okazaki,N., Kikuno,R., Ohara,R., Inamoto,S., Aizawa,H., Yuasa,S.,
            Nakajima,D., Nagase,T., Ohara,O. and Koga,H.
  TITLE     Prediction of the coding sequences of mouse homologues of KIAA
            gene: II. The complete nucleotide sequences of 400 mouse
            KIAA-homologous cDNAs identified by screening of terminal sequences
            of cDNA clones randomly sampled from size-fractionated libraries
  JOURNAL   DNA Res 10 (1), 35-48 (2003)
   PUBMED   12693553
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC122902.4.
            
            On Jan 4, 2022 this sequence version replaced NM_153563.2.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC023952.1, AK148011.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMN00849374,
                                           SAMN00849375 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-194               AC122902.4         132629-132822       c
            195-264             AC122902.4         129284-129353       c
            265-339             AC122902.4         128516-128590       c
            340-474             AC122902.4         128073-128207       c
            475-595             AC122902.4         127864-127984       c
            596-664             AC122902.4         126809-126877       c
            665-771             AC122902.4         125753-125859       c
            772-899             AC122902.4         125515-125642       c
            900-1082            AC122902.4         123000-123182       c
            1083-1300           AC122902.4         122455-122672       c
            1301-1366           AC122902.4         121337-121402       c
            1367-1430           AC122902.4         121168-121231       c
            1431-1502           AC122902.4         120039-120110       c
            1503-1577           AC122902.4         119444-119518       c
            1578-1675           AC122902.4         119186-119283       c
            1676-1802           AC122902.4         117940-118066       c
            1803-1903           AC122902.4         117636-117736       c
            1904-1970           AC122902.4         116889-116955       c
            1971-2075           AC122902.4         116443-116547       c
            2076-2280           AC122902.4         115723-115927       c
            2281-3215           AC122902.4         113660-114594       c
FEATURES             Location/Qualifiers
     source          1..3215
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="3"
                     /map="3 46.83 cM"
     gene            1..3215
                     /gene="Strip1"
                     /gene_synonym="6330569M22Rik; 6530401O14Rik; Fam40a"
                     /note="striatin interacting protein 1"
                     /db_xref="GeneID:229707"
                     /db_xref="MGI:MGI:2443884"
     exon            1..194
                     /gene="Strip1"
                     /gene_synonym="6330569M22Rik; 6530401O14Rik; Fam40a"
                     /inference="alignment:Splign:2.1.0"
     CDS             15..2528
                     /gene="Strip1"
                     /gene_synonym="6330569M22Rik; 6530401O14Rik; Fam40a"
                     /note="protein FAM40A; family with sequence similarity 40,
                     member A"
                     /codon_start=1
                     /product="striatin-interacting protein 1"
                     /protein_id="NP_705791.2"
                     /db_xref="CCDS:CCDS51043.1"
                     /db_xref="GeneID:229707"
                     /db_xref="MGI:MGI:2443884"
                     /translation="MEPAAAGPGPLIVNNKQPQPPPPPPPATAQPPPGAPRAAGGLLP
                     GGKAREFNRNQRKDSEGYSESPDLEFEYADTDKWAAELAELYSYTEGPEFLMNRKCFE
                     EDFRIHVSDKKWTELDTNQHRTHAMRLLDGLEVTAREKRLKVARAILYVAQGTFGECS
                     SEAEVQFWMRYNIFLLLEVGTFNALVELLNMEIDNSAACSSAVRKPAISLADSTDLRV
                     LLNIMYLIVETVHQDCDGDKAEWRTMRQTFRAELGSPLYNNEPFAIMLFGMVTKFCSG
                     HAPHFPMKKVLLLLWKTVLCTLGGFEELQSMKAEKRTLLGLPPLPEDSIKVIRNMRAA
                     SPPASASDLIEQQQKRGRREHKALIKQDNLDAFNERDPYKADDSREEEEENDDDSSLE
                     GEAFPLERDEVMPPPLQHPQTDRLTCPKGLPWAPKVREKDIEMFLESSRSKFIGYTLG
                     SDTNTVVGLPRPIHESIKTLKQHKYTSIAEVQAQMEEEYLRSPLSGGEEEVEQVPAET
                     LYQGLLPSLPQYMIALLKILLAAAPTSKAKTDSINILADVLPEEMPTTVLQSMKLGVD
                     VNRHKEVIVKAISAVLLLLLKHFKLNHIYQFEYMAQHLVFANCIPLILKFFNQNIMSY
                     ITAKNSISVLDYPHCVVNELPELTAESLEAGDNNQFCWRNLFSCINLLRILNKLTKWK
                     HSRTMMLVVFKSAPILKRALKVKQAMMQLYVLKLLKVQTKYLGRQWRKSNMKTMSAIY
                     QKVRHRLNDDWAYGNDLDARPWDFQAEECALRANIERFNARRYDRTHSNPDFLPVDNC
                     LQSVLGQRVDLPEDFQMNYDLWLEREVFSKPISWEELLQ"
     exon            195..264
                     /gene="Strip1"
                     /gene_synonym="6330569M22Rik; 6530401O14Rik; Fam40a"
                     /inference="alignment:Splign:2.1.0"
     exon            265..339
                     /gene="Strip1"
                     /gene_synonym="6330569M22Rik; 6530401O14Rik; Fam40a"
                     /inference="alignment:Splign:2.1.0"
     exon            340..474
                     /gene="Strip1"
                     /gene_synonym="6330569M22Rik; 6530401O14Rik; Fam40a"
                     /inference="alignment:Splign:2.1.0"
     exon            475..595
                     /gene="Strip1"
                     /gene_synonym="6330569M22Rik; 6530401O14Rik; Fam40a"
                     /inference="alignment:Splign:2.1.0"
     exon            596..664
                     /gene="Strip1"
                     /gene_synonym="6330569M22Rik; 6530401O14Rik; Fam40a"
                     /inference="alignment:Splign:2.1.0"
     exon            665..771
                     /gene="Strip1"
                     /gene_synonym="6330569M22Rik; 6530401O14Rik; Fam40a"
                     /inference="alignment:Splign:2.1.0"
     exon            772..899
                     /gene="Strip1"
                     /gene_synonym="6330569M22Rik; 6530401O14Rik; Fam40a"
                     /inference="alignment:Splign:2.1.0"
     exon            900..1082
                     /gene="Strip1"
                     /gene_synonym="6330569M22Rik; 6530401O14Rik; Fam40a"
                     /inference="alignment:Splign:2.1.0"
     exon            1083..1300
                     /gene="Strip1"
                     /gene_synonym="6330569M22Rik; 6530401O14Rik; Fam40a"
                     /inference="alignment:Splign:2.1.0"
     exon            1301..1366
                     /gene="Strip1"
                     /gene_synonym="6330569M22Rik; 6530401O14Rik; Fam40a"
                     /inference="alignment:Splign:2.1.0"
     exon            1367..1430
                     /gene="Strip1"
                     /gene_synonym="6330569M22Rik; 6530401O14Rik; Fam40a"
                     /inference="alignment:Splign:2.1.0"
     exon            1431..1502
                     /gene="Strip1"
                     /gene_synonym="6330569M22Rik; 6530401O14Rik; Fam40a"
                     /inference="alignment:Splign:2.1.0"
     exon            1503..1577
                     /gene="Strip1"
                     /gene_synonym="6330569M22Rik; 6530401O14Rik; Fam40a"
                     /inference="alignment:Splign:2.1.0"
     exon            1578..1675
                     /gene="Strip1"
                     /gene_synonym="6330569M22Rik; 6530401O14Rik; Fam40a"
                     /inference="alignment:Splign:2.1.0"
     exon            1676..1802
                     /gene="Strip1"
                     /gene_synonym="6330569M22Rik; 6530401O14Rik; Fam40a"
                     /inference="alignment:Splign:2.1.0"
     exon            1803..1903
                     /gene="Strip1"
                     /gene_synonym="6330569M22Rik; 6530401O14Rik; Fam40a"
                     /inference="alignment:Splign:2.1.0"
     exon            1904..1970
                     /gene="Strip1"
                     /gene_synonym="6330569M22Rik; 6530401O14Rik; Fam40a"
                     /inference="alignment:Splign:2.1.0"
     exon            1971..2075
                     /gene="Strip1"
                     /gene_synonym="6330569M22Rik; 6530401O14Rik; Fam40a"
                     /inference="alignment:Splign:2.1.0"
     exon            2076..2280
                     /gene="Strip1"
                     /gene_synonym="6330569M22Rik; 6530401O14Rik; Fam40a"
                     /inference="alignment:Splign:2.1.0"
     exon            2281..3215
                     /gene="Strip1"
                     /gene_synonym="6330569M22Rik; 6530401O14Rik; Fam40a"
                     /inference="alignment:Splign:2.1.0"
     regulatory      3194..3199
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Strip1"
                     /gene_synonym="6330569M22Rik; 6530401O14Rik; Fam40a"
                     /note="hexamer: ATTAAA"
     polyA_site      3215
                     /gene="Strip1"
                     /gene_synonym="6330569M22Rik; 6530401O14Rik; Fam40a"
                     /note="major polyA site"
ORIGIN      
        1 gtggagcagc caagatggag ccggcagccg ccggtcccgg ccctctgatt gtgaacaaca
       61 agcagccgca gccgccacct cctccgccgc ctgccaccgc gcagcctcct cctggggcgc
      121 cgagggccgc cggaggcctc ctgccggggg gcaaagcccg cgagttcaac cgcaaccagc
      181 gcaaagactc ggagggctat tccgaatctc cagacctgga gtttgagtat gccgacacag
      241 acaagtgggc tgcagagctt gcagagcttt acagctacac agaaggacca gaattcctga
      301 tgaatcgaaa atgctttgag gaggacttcc ggatccatgt gtcagacaag aagtggactg
      361 agctggatac caaccagcac cggacccacg ccatgaggct tctggatggc ttggaggtca
      421 ctgcccgaga gaagagactc aaggtggccc gagccattct ctatgttgcc caaggtacct
      481 ttggagagtg cagctcagag gcagaagtgc agttctggat gcgctacaac atatttctgc
      541 tcctggaggt gggcacgttc aatgccttgg tggagcttct gaacatggaa atagataaca
      601 gtgccgcatg cagcagtgca gtgaggaagc ctgccatctc cctggctgac agcaccgacc
      661 tgagggtcct gctcaacatc atgtacctga ttgtggagac tgttcaccag gattgtgatg
      721 gggacaaggc cgagtggaga accatgcgac agaccttcag agctgagcta ggttcccctc
      781 tgtacaacaa cgagccattt gccatcatgc tatttgggat ggtgaccaaa ttttgcagtg
      841 gccatgcccc ccacttcccc atgaagaaag ttctcttgct gctctggaag actgtattgt
      901 gcacgctggg cggctttgag gagctgcaga gcatgaaggc tgagaagcgc actctcctgg
      961 gccttccccc tctgcctgag gacagcatca aggtcatccg gaacatgagg gctgcctccc
     1021 caccagcctc tgcctcagac ctgattgagc agcagcagaa gcggggccga cgggagcaca
     1081 aggctctgat aaagcaggac aatctagatg ccttcaacga gcgggatccc tataaggctg
     1141 acgactctcg ggaggaggaa gaggagaatg atgacgacag cagcctggag ggggaggctt
     1201 ttcccctgga gcgagacgag gtgatgcctc ccccactaca gcaccctcag actgacagac
     1261 tcacctgccc aaaagggctc ccttgggctc ccaaagttag agagaaagac attgagatgt
     1321 tccttgaatc cagccgcagc aagttcatag gctacactct aggaagtgac accaacacag
     1381 tggtggggct gccaaggcca atccacgaaa gcatcaagac attgaaacaa cacaagtata
     1441 catcaatcgc agaggtccag gcacagatgg aggaggaata ccttcgctct cctctctcag
     1501 ggggagaaga ggaagttgaa caagttcctg cagaaaccct ctatcaaggc ttgctcccca
     1561 gcctgcctca gtatatgatt gcccttctga agatcctact ggcagcagct cccacatcga
     1621 aagccaaaac agactccatc aacatcctgg cagatgttct gcccgaggag atgcccacca
     1681 cagtactgca gagcatgaag ttgggggtgg atgtgaaccg ccacaaagag gtcatcgtta
     1741 aggccatttc tgccgtgctg ctgctgctgc tcaagcactt taagttgaac cacatctacc
     1801 agtttgaata catggcccag cacctggtat ttgccaactg catccctttg atcctgaagt
     1861 tcttcaatca aaacatcatg tcctacatca ctgccaagaa cagcatttcc gtcttggatt
     1921 accctcactg cgtggtgaac gaacttccag agctaactgc agagagtctg gaagctggtg
     1981 acaacaacca gttttgctgg aggaatctct tttcttgcat caatctgctt cggatcttga
     2041 acaagctaac caagtggaaa cactcgagaa ccatgatgct ggtggtgttc aagtcggcac
     2101 ccatcctgaa gcgggccctt aaggtgaagc aggccatgat gcagctctac gtgctgaagt
     2161 tgctcaaggt gcagaccaag tatttggggc gacagtggcg caagagcaac atgaagacga
     2221 tgtctgccat ctaccagaag gtgcggcacc ggctgaacga tgactgggcg tacggcaatg
     2281 atcttgatgc ccggccatgg gacttccagg cagaggagtg tgctctccgt gccaacattg
     2341 aacgcttcaa tgcccggcgc tatgaccgga cccacagcaa ccctgacttc ttgccagtgg
     2401 acaattgcct gcagagcgta ttgggccagc gggtagatct tcctgaggac ttccagatga
     2461 actatgacct atggctagag agggaggtct tctctaagcc catttcctgg gaagagctgc
     2521 tgcagtgaag agggctggaa aagaccatga tctgtctgtc tcatacctga gggactgtcc
     2581 tcaccattgc tgcagtgctc ctgttcccct ccaggtggca gcacagctcc attgagtcct
     2641 ccacagcctg ccctgggcct gtgagtgaac ccaggttagc ctctggttga ttcccagcat
     2701 cctactcagg agctgtcatc tccaagctgg gatctactct ccctccactt gcccagcttc
     2761 taccctcctc tcttggatat gatcgattga aactcatttc acagttagcc ctaggctggg
     2821 gaaagctgag ccgggcctgg catcccttct cgacagcagc tgtatcgtga ggtcccacag
     2881 actcctgggc agctttggca atgtcagctg gtcaggaagg agggtccgct tgagggccaa
     2941 gaacagagtc agcaccttgg ctgtgctctg ggactatctc gtgccatccc agcatcctgc
     3001 tgagttctgt ccagaagtga tggacacaca gcctctgcac cctggttttg gatgtggtca
     3061 aaggtggagt gaggcttcct gaagccagag gtgccggttt cctctcggtt gccatgacct
     3121 gtaaatatac aaaactctgt gtgatctctg gtgtcatggt ggggttttta ttgtgtttgt
     3181 gtattctgtt tacattaaaa gaaagcaaaa ctgtc
//
