LOCUS       NM_001399439            1901 bp    mRNA    linear   ROD 06-AUG-2024
DEFINITION  Mus musculus sperm tail PG rich repeat containing 3 (Stpg3),
            transcript variant 2, mRNA.
ACCESSION   NM_001399439 XM_030252149
VERSION     NM_001399439.1
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 1901)
  AUTHORS   Park,S., Shimada,K., Fujihara,Y., Xu,Z., Shimada,K., Larasati,T.,
            Pratiwi,P., Matzuk,R.M., Devlin,D.J., Yu,Z., Garcia,T.X.,
            Matzuk,M.M. and Ikawa,M.
  TITLE     CRISPR/Cas9-mediated genome-edited mice reveal 10 testis-enriched
            genes are dispensable for male fecundity
  JOURNAL   Biol Reprod 103 (2), 195-204 (2020)
   PUBMED   32561905
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AL732309.9.
            
            On Jan 7, 2022 this sequence version replaced XM_030252149.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR5189685.65378.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849384 [ECO:0000348]
            ##Evidence-Data-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-56                AL732309.9         111245-111300       c
            57-255              AL732309.9         107127-107325       c
            256-416             AL732309.9         106868-107028       c
            417-551             AL732309.9         106640-106774       c
            552-640             AL732309.9         106463-106551       c
            641-935             AL732309.9         105921-106215       c
            936-1901            AL732309.9         104839-105804       c
FEATURES             Location/Qualifiers
     source          1..1901
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="2"
                     /map="2 17.07 cM"
     gene            1..1901
                     /gene="Stpg3"
                     /gene_synonym="4933433C11Rik"
                     /note="sperm tail PG rich repeat containing 3"
                     /db_xref="GeneID:74472"
                     /db_xref="MGI:MGI:1921722"
     exon            1..56
                     /gene="Stpg3"
                     /gene_synonym="4933433C11Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            57..255
                     /gene="Stpg3"
                     /gene_synonym="4933433C11Rik"
                     /inference="alignment:Splign:2.1.0"
     CDS             149..1069
                     /gene="Stpg3"
                     /gene_synonym="4933433C11Rik"
                     /note="sperm-tail PG-rich repeat-containing protein 3"
                     /codon_start=1
                     /product="protein STPG3"
                     /protein_id="NP_001386368.1"
                     /db_xref="GeneID:74472"
                     /db_xref="MGI:MGI:1921722"
                     /translation="MNFDQKAVKFLANFYINGGKHWTRGPLSQKPLHPTQPSAAAVLW
                     WDQELETAWDEMWHPKMKRSSSGFRLRIGAPNESTPISTGTLRELWLERRPPILMDLD
                     VPGPAQYEVPNMSLREASPHPQYTIGRKYPVREGGGRRAWQTMWLQSESPFMQKTDFN
                     RETKWPSPAEYTPLSQPAFPAFSFGDRHRSVVKMPESRFRPGMLRARGPCSYTPLLPT
                     SKPSGEKRPSPNTYNILPGYRLQSTRSPAFSMSRSPAFASWVSSSGTPGPAAYYVEDC
                     YNSRFPSSPGVVIQGVRRPKRHDTGPFCTL"
     exon            256..416
                     /gene="Stpg3"
                     /gene_synonym="4933433C11Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            417..551
                     /gene="Stpg3"
                     /gene_synonym="4933433C11Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            552..640
                     /gene="Stpg3"
                     /gene_synonym="4933433C11Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            641..935
                     /gene="Stpg3"
                     /gene_synonym="4933433C11Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            936..1901
                     /gene="Stpg3"
                     /gene_synonym="4933433C11Rik"
                     /inference="alignment:Splign:2.1.0"
     polyA_site      1267
                     /gene="Stpg3"
                     /gene_synonym="4933433C11Rik"
                     /note="major polyA site"
     polyA_site      1347
                     /gene="Stpg3"
                     /gene_synonym="4933433C11Rik"
                     /note="major polyA site"
     regulatory      1878..1883
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Stpg3"
                     /gene_synonym="4933433C11Rik"
                     /note="hexamer: ACTAAA"
     polyA_site      1901
                     /gene="Stpg3"
                     /gene_synonym="4933433C11Rik"
                     /note="major polyA site"
ORIGIN      
        1 actcccatct tgcagcatct ctggttcaaa gaccagctag gaaggacctg agcaagggag
       61 ctcccagcaa cagaggggag gggcaagatc caacagtgag gtcacagagc ccagcagtgc
      121 tctctggcca aggagcccaa gccccagaat gaactttgat cagaaggctg tgaaattcct
      181 ggcaaatttt tacatcaatg gaggcaaaca ctggactcgg ggccccctga gtcagaaacc
      241 tcttcatccc acccagccca gtgctgctgc tgtgttatgg tgggaccagg agctggagac
      301 tgcctgggat gagatgtggc acccaaagat gaagagatcc tcaagtggct tcaggttaag
      361 aataggcgcc cccaatgagt ccacacctat cagcacaggg actctgagag agctgtggct
      421 cgagagacgt cctccaatcc tgatggacct ggatgtccct ggcccagccc agtacgaggt
      481 gcccaatatg tctctgcgag aggcctctcc acacccccaa tacaccatcg gtcgcaagta
      541 cccggttcga gagggtggtg gccgcagggc atggcagacc atgtggctcc aaagtgaaag
      601 ccccttcatg cagaagaccg acttcaaccg agagacaaag tggccatcac ccgccgagta
      661 cacgccgctg agccagcctg ccttcccggc cttcagcttt ggagaccgcc atcgctctgt
      721 tgtcaaaatg ccggagagtc gcttccgccc agggatgctc cgagcccgag gtccttgtag
      781 ctatacccca ctcttgccta cctcaaagcc ctctggcgag aagcgaccca gccccaacac
      841 ctataacatc cttcctgggt accgtctgca gagcacacgc tcacctgcct tctccatgag
      901 ccggtctcct gcgtttgcat cctgggtcag ctcctccgga accccaggtc cagctgccta
      961 ctacgtggaa gactgctaca actcacgctt cccatcttcg cctggagtag ttattcaagg
     1021 agtgcgcaga cccaagcgcc acgacacagg ccctttctgc acactatagg cccatcgggt
     1081 ataggttgca aagctgacct ctcttgaggc ttaccaaggc ttcctttgga actctttgtc
     1141 tatagccggc tttctgatcc tctagacacc cctcacccac tcttctggct taggctgtcc
     1201 aacaagaaga gtcttcccag agtccccttt caccccacta taccaagatg caaatgattc
     1261 ttctgaactg tggtctctgg tgtgcctggt tgcccatcct ttgcccaatg ggctgtcttg
     1321 aatatgtggc tttctgcttc cctggtattt ctggctttct ctgttcctgc gtggtgttct
     1381 tttcttcagg attgaaatgg cagtctggga actaacccta agctttctga cctaggatag
     1441 aataggaaaa ggcaatgtgg gacaatctaa tccactcacc taaggtccag catctacctg
     1501 aggatcaggg atgcttgctg ggctgaggaa ctattgggat gggatgggaa gtcagaacct
     1561 ggggtgcaga cacctgtctg cagacagcct tgcctagccc actgaggtag gacccaggga
     1621 atcagctcac cagacactgg ccctactccc ctggagcctt gacctgaaga gtcaactggg
     1681 tttggtaact tgtgttctga gaacccacgc ccaaagcctt cccaccctag cccctgccca
     1741 atgatggttc cctcagcact gttgatctgc cttcctactt agaagtagcc cccttcagga
     1801 gccttgccct gcagctagta atagcaattt ctccagagct ctctccatac tttcttccac
     1861 acccagacac agatctcact aaagaacgtt tttaaaatgt a
//
