LOCUS       NM_198659               1943 bp    mRNA    linear   ROD 08-AUG-2024
DEFINITION  Mus musculus sperm tail PG rich repeat containing 2 (Stpg2), mRNA.
ACCESSION   NM_198659 XM_006501628 XM_355433
VERSION     NM_198659.3
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 1943)
  AUTHORS   Diez-Roux,G., Banfi,S., Sultan,M., Geffers,L., Anand,S., Rozado,D.,
            Magen,A., Canidio,E., Pagani,M., Peluso,I., Lin-Marq,N., Koch,M.,
            Bilio,M., Cantiello,I., Verde,R., De Masi,C., Bianchi,S.A.,
            Cicchini,J., Perroud,E., Mehmeti,S., Dagand,E., Schrinner,S.,
            Nurnberger,A., Schmidt,K., Metz,K., Zwingmann,C., Brieske,N.,
            Springer,C., Hernandez,A.M., Herzog,S., Grabbe,F., Sieverding,C.,
            Fischer,B., Schrader,K., Brockmeyer,M., Dettmer,S., Helbig,C.,
            Alunni,V., Battaini,M.A., Mura,C., Henrichsen,C.N.,
            Garcia-Lopez,R., Echevarria,D., Puelles,E., Garcia-Calero,E.,
            Kruse,S., Uhr,M., Kauck,C., Feng,G., Milyaev,N., Ong,C.K.,
            Kumar,L., Lam,M., Semple,C.A., Gyenesei,A., Mundlos,S., Radelof,U.,
            Lehrach,H., Sarmientos,P., Reymond,A., Davidson,D.R., Dolle,P.,
            Antonarakis,S.E., Yaspo,M.L., Martinez,S., Baldock,R.A., Eichele,G.
            and Ballabio,A.
  TITLE     A high-resolution anatomical atlas of the transcriptome in the
            mouse embryo
  JOURNAL   PLoS Biol 9 (1), e1000582 (2011)
   PUBMED   21267068
  REMARK    Publication Status: Online-Only
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC113307.12, AC166913.3, AC120880.8, AC110257.12 and AC121279.7.
            
            On Mar 31, 2023 this sequence version replaced NM_198659.2.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK046955.1, AK161389.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849384 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-115               AC113307.12        185530-185644
            116-228             AC113307.12        191889-192001
            229-357             AC113307.12        194895-195023
            358-522             AC113307.12        197826-197990
            523-635             AC166913.3         26984-27096
            636-747             AC166913.3         37860-37971
            748-855             AC120880.8         94798-94905         c
            856-1012            AC120880.8         87010-87166         c
            1013-1173           AC120880.8         84068-84228         c
            1174-1263           AC120880.8         75829-75918         c
            1264-1423           AC110257.12        105231-105390       c
            1424-1542           AC110257.12        2119-2237           c
            1543-1691           AC121279.7         183111-183259
            1692-1943           AC121279.7         190659-190910
FEATURES             Location/Qualifiers
     source          1..1943
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="3"
                     /map="3 64.68 cM"
     gene            1..1943
                     /gene="Stpg2"
                     /gene_synonym="B930007M17Rik; Gm1017"
                     /note="sperm tail PG rich repeat containing 2"
                     /db_xref="GeneID:381476"
                     /db_xref="MGI:MGI:2685863"
     exon            1..115
                     /gene="Stpg2"
                     /gene_synonym="B930007M17Rik; Gm1017"
                     /inference="alignment:Splign:2.1.0"
     CDS             7..1692
                     /gene="Stpg2"
                     /gene_synonym="B930007M17Rik; Gm1017"
                     /codon_start=1
                     /product="sperm-tail PG-rich repeat-containing protein 2"
                     /protein_id="NP_941061.1"
                     /db_xref="CCDS:CCDS17871.1"
                     /db_xref="GeneID:381476"
                     /db_xref="MGI:MGI:2685863"
                     /translation="MYDRAPRWLDCANRGSTEEHVGPGTYQVPFPKQQATGCYAPFLS
                     LSSKTSACVVSSDAGQAVPGPAHYNVSQAQYNIRGGRSLQNREKRFKKLISDGPGPGS
                     YNWPYLGTLCITTRQKTPRTPAVSRNIDIPSIPSSGKSHGYHLNDDDTIMRRTPPPSD
                     NTIGPAYYNPQFDYPKASLKYKGVNFGNATGRQEFLKYSGPGPGQYDIIQKRKLHCEN
                     INIKREQEHNYYTYVPRLYEAIILQEEKKGVPGPGKYNIKSEFDMIKSMSALVNSPSF
                     IFFSETERFEPIKSCTPAPGTYNEIRTAFKCPKKRFGLSLPFNQSAARFTEDSKAQKL
                     PGPGFYDISTNIVKAQVKKPCLKKQPKTGFGSSVPRTLFTAQKKAFRGPGPSDYQVRG
                     THDELPNLNKSAAFLSRAEKTPPVRKMRLPAPGRYDVQKSYDMSQVKHKYMPPRTSVA
                     KKRHSSFLSAAPRCLGKIADGPGPATYSPVLMKSGAIISFVKGPKRFQEFHGEFSPGP
                     TTYELSPFLRHSLLKRTYNVTLPCSSSPNRENTGCPSQKATQKFQREKLQYFN"
     exon            116..228
                     /gene="Stpg2"
                     /gene_synonym="B930007M17Rik; Gm1017"
                     /inference="alignment:Splign:2.1.0"
     exon            229..357
                     /gene="Stpg2"
                     /gene_synonym="B930007M17Rik; Gm1017"
                     /inference="alignment:Splign:2.1.0"
     exon            358..522
                     /gene="Stpg2"
                     /gene_synonym="B930007M17Rik; Gm1017"
                     /inference="alignment:Splign:2.1.0"
     exon            523..635
                     /gene="Stpg2"
                     /gene_synonym="B930007M17Rik; Gm1017"
                     /inference="alignment:Splign:2.1.0"
     exon            636..747
                     /gene="Stpg2"
                     /gene_synonym="B930007M17Rik; Gm1017"
                     /inference="alignment:Splign:2.1.0"
     exon            748..855
                     /gene="Stpg2"
                     /gene_synonym="B930007M17Rik; Gm1017"
                     /inference="alignment:Splign:2.1.0"
     exon            856..1012
                     /gene="Stpg2"
                     /gene_synonym="B930007M17Rik; Gm1017"
                     /inference="alignment:Splign:2.1.0"
     exon            1013..1173
                     /gene="Stpg2"
                     /gene_synonym="B930007M17Rik; Gm1017"
                     /inference="alignment:Splign:2.1.0"
     exon            1174..1263
                     /gene="Stpg2"
                     /gene_synonym="B930007M17Rik; Gm1017"
                     /inference="alignment:Splign:2.1.0"
     exon            1264..1423
                     /gene="Stpg2"
                     /gene_synonym="B930007M17Rik; Gm1017"
                     /inference="alignment:Splign:2.1.0"
     exon            1424..1542
                     /gene="Stpg2"
                     /gene_synonym="B930007M17Rik; Gm1017"
                     /inference="alignment:Splign:2.1.0"
     exon            1543..1691
                     /gene="Stpg2"
                     /gene_synonym="B930007M17Rik; Gm1017"
                     /inference="alignment:Splign:2.1.0"
     exon            1692..1943
                     /gene="Stpg2"
                     /gene_synonym="B930007M17Rik; Gm1017"
                     /inference="alignment:Splign:2.1.0"
     regulatory      1924..1929
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Stpg2"
                     /gene_synonym="B930007M17Rik; Gm1017"
                     /note="hexamer: AATAAA"
     polyA_site      1943
                     /gene="Stpg2"
                     /gene_synonym="B930007M17Rik; Gm1017"
                     /note="major polyA site"
ORIGIN      
        1 atcactatgt atgaccgtgc tccgcgctgg ctcgactgtg ccaaccgcgg cagcaccgag
       61 gagcacgtgg ggcctgggac ctaccaggta ccttttccta agcagcaggc cacaggttgc
      121 tatgcaccat ttctttcttt gagttccaaa acaagtgctt gtgttgtctc ctctgatgct
      181 ggccaagctg ttccaggtcc agcacactac aacgtatcac aagcacagta taatataaga
      241 ggaggccgca gtctgcaaaa ccgagagaag cgatttaaga aacttatttc ggatggtcca
      301 ggacctggga gctacaattg gccttatctt gggacattat gtatcacaac cagacagaaa
      361 actcctagaa ctcctgcagt ttccagaaac attgatattc cttcaatccc ctcttccgga
      421 aagtcacatg ggtatcatct caatgacgat gacactatta tgagacgcac cccacctcct
      481 agtgacaaca caataggtcc agcgtactac aatcctcagt ttgattatcc taaagcatct
      541 ttgaaatata aaggcgtaaa ttttggcaat gctacaggaa gacaagaatt tctcaagtat
      601 tcgggtcctg gtcctggaca gtatgatatc atccagaaaa ggaaactaca ttgtgaaaat
      661 attaacatca agagagaaca agagcataat tattatacat atgtcccacg gctatatgaa
      721 gcgataatat tgcaggagga aaaaaagggt gtaccaggac ctggaaagta caacattaaa
      781 agtgaatttg acatgataaa atccatgtca gcacttgtga attctccatc ttttattttc
      841 ttttctgaaa cagagagatt tgaacctata aaatcatgca ccccagctcc tggcacatac
      901 aatgaaatac gaactgcttt caagtgccca aagaaaagat ttggactgtc tttgccattt
      961 aaccagagtg ctgctcgatt cacagaagat tccaaggcac agaagctacc aggtcctggc
     1021 ttttatgata tctcaaccaa cattgtaaaa gcccaggtta aaaaaccctg cttgaagaaa
     1081 caaccgaaaa ctggatttgg ttcttctgtg cctcgaactt tgttcacagc tcagaaaaaa
     1141 gctttccgtg gtcctgggcc tagtgattat caggttcgag gaactcatga tgaattacct
     1201 aacttgaaca aatctgctgc tttcttgtcg agagcagaaa aaactccacc agtacgaaaa
     1261 atgcgtcttc cagctcctgg ccgctatgat gttcagaaat cgtatgacat gtcccaagtt
     1321 aaacataagt acatgccacc tcgtacttcg gtggctaaaa aaaggcattc ctctttcctg
     1381 agcgcagctc ctcggtgcct gggaaaaatc gctgatgggc caggacctgc aacatacagt
     1441 cctgttttaa tgaagtctgg tgccataatc tcattcgtta aaggaccaaa gcgttttcaa
     1501 gagtttcatg gcgagttttc tccaggccct acgacatatg agctcagtcc atttctaaga
     1561 cattctcttc tgaagagaac atacaatgtc actctgccgt gttcatcctc tcctaataga
     1621 gaaaatactg gttgtccatc acaaaaagcc acacaaaaat ttcaaagaga gaaattacag
     1681 tattttaact gagatgtact tccattgtgg ggacatccta catcagcagc tcaaaggaca
     1741 gtatccattc taacctctac aaacaggaaa gtctgttgct gtagcaaatt taattctatt
     1801 tttctatcaa atttctccat tacagaagat atataaataa ataatatata tatatattca
     1861 tattcttcat tgcattcttt gtaaacacat acatttgatg cctccagatg aaatgtgggc
     1921 ttaaataaag acgtccaatg aaa
//
