LOCUS       NM_026942               2004 bp    mRNA    linear   ROD 30-APR-2024
DEFINITION  Mus musculus stomatin-like 1 (Stoml1), transcript variant 1, mRNA.
ACCESSION   NM_026942
VERSION     NM_026942.3
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 2004)
  AUTHORS   Adams,D.J., Barlas,B., McIntyre,R.E., Salguero,I., van der
            Weyden,L., Barros,A., Vicente,J.R., Karimpour,N., Haider,A.,
            Ranzani,M., Turner,G., Thompson,N.A., Harle,V., Olvera-Leon,R.,
            Robles-Espinoza,C.D., Speak,A.O., Geisler,N., Weninger,W.J.,
            Geyer,S.H., Hewinson,J., Karp,N.A., Fu,B., Yang,F., Kozik,Z.,
            Choudhary,J., Yu,L., van Ruiten,M.S., Rowland,B.D., Lelliott,C.J.,
            Del Castillo Velasco-Herrera,M., Verstraten,R., Bruckner,L.,
            Henssen,A.G., Rooimans,M.A., de Lange,J., Mohun,T.J., Arends,M.J.,
            Kentistou,K.A., Coelho,P.A., Zhao,Y., Zecchini,H., Perry,J.R.B.,
            Jackson,S.P. and Balmus,G.
  CONSRTM   Sanger Mouse Genetics Project
  TITLE     Genetic determinants of micronucleus formation in vivo
  JOURNAL   Nature 627 (8002), 130-136 (2024)
   PUBMED   38355793
REFERENCE   2  (bases 1 to 2004)
  AUTHORS   Kozlenkov,A., Lapatsina,L., Lewin,G.R. and Smith,E.S.
  TITLE     Subunit-specific inhibition of acid sensing ion channels by
            stomatin-like protein 1
  JOURNAL   J Physiol 592 (4), 557-569 (2014)
   PUBMED   24247984
  REMARK    GeneRIF: STOML1 modulates ASIC1a and ASIC3 in DRG neurons.
REFERENCE   3  (bases 1 to 2004)
  AUTHORS   Redshaw,N., Camps,C., Sharma,V., Motallebipour,M., Guzman-Ayala,M.,
            Oikonomopoulos,S., Thymiakou,E., Ragoussis,J. and Episkopou,V.
  TITLE     TGF-beta/Smad2/3 signaling directly regulates several miRNAs in
            mouse ES cells and early embryos
  JOURNAL   PLoS One 8 (1), e55186 (2013)
   PUBMED   23390484
REFERENCE   4  (bases 1 to 2004)
  AUTHORS   Tarantino,C., Paolella,G., Cozzuto,L., Minopoli,G., Pastore,L.,
            Parisi,S. and Russo,T.
  TITLE     miRNA 34a, 100, and 137 modulate differentiation of mouse embryonic
            stem cells
  JOURNAL   FASEB J 24 (9), 3255-3263 (2010)
   PUBMED   20439489
REFERENCE   5  (bases 1 to 2004)
  AUTHORS   Fenske,T.S., McMahon,C., Edwin,D., Jarvis,J.C., Cheverud,J.M.,
            Minn,M., Mathews,V., Bogue,M.A., Province,M.A., McLeod,H.L. and
            Graubert,T.A.
  TITLE     Identification of candidate alkylator-induced cancer susceptibility
            genes by whole genome scanning in mice
  JOURNAL   Cancer Res 66 (10), 5029-5038 (2006)
   PUBMED   16707424
REFERENCE   6  (bases 1 to 2004)
  AUTHORS   Stryke,D., Kawamoto,M., Huang,C.C., Johns,S.J., King,L.A.,
            Harper,C.A., Meng,E.C., Lee,R.E., Yee,A., L'Italien,L.,
            Chuang,P.T., Young,S.G., Skarnes,W.C., Babbitt,P.C. and Ferrin,T.E.
  TITLE     BayGenomics: a resource of insertional mutations in mouse embryonic
            stem cells
  JOURNAL   Nucleic Acids Res 31 (1), 278-281 (2003)
   PUBMED   12520002
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            CJ151482.1, AK045820.1, AC160976.2 and BE947366.1.
            
            On Aug 6, 2009 this sequence version replaced NM_026942.2.
            
            Transcript Variant: This variant (1) encodes the functional
            protein.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK045820.1, BC037074.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374, SAMN00849375
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-28                CJ151482.1         2-29
            29-505              AK045820.1         1-477
            506-506             AC160976.2         76487-76487         c
            507-1982            AK045820.1         479-1954
            1983-2004           BE947366.1         1-22                c
FEATURES             Location/Qualifiers
     source          1..2004
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="9"
                     /map="9 31.63 cM"
     gene            1..2004
                     /gene="Stoml1"
                     /gene_synonym="1810015E19Rik; SLP1; STORP; UNC24; WPB72"
                     /note="stomatin-like 1"
                     /db_xref="GeneID:69106"
                     /db_xref="MGI:MGI:1916356"
     exon            1..236
                     /gene="Stoml1"
                     /gene_synonym="1810015E19Rik; SLP1; STORP; UNC24; WPB72"
                     /inference="alignment:Splign:2.1.0"
     CDS             104..1303
                     /gene="Stoml1"
                     /gene_synonym="1810015E19Rik; SLP1; STORP; UNC24; WPB72"
                     /codon_start=1
                     /product="stomatin-like protein 1"
                     /protein_id="NP_081218.3"
                     /db_xref="CCDS:CCDS23241.1"
                     /db_xref="GeneID:69106"
                     /db_xref="MGI:MGI:1916356"
                     /translation="MLGRSGYRALPLGDFDRFQQSSFGFLGSQKGCLSPEPGSVGPGA
                     DAPESWPSCLCHGLVSVLGFLLLLLTFPISGWFALKIVPTYERMIVFRLGRIRNPQGP
                     GMVLLLPFIDSFQRVDLRTRAFNVPPCKLASKDGAVLSVGADVQFRIWDPVLSVMAVK
                     DLNTATRMTAHNAMTKALLRRPLQEIQMEKLKIGDQLLLEINDVTRAWGLEVDRVELA
                     VEAVLQPPQDSLTVPSLDSTLQQLALHLLGGSMNSAVGHVPSPGPDTLEMINEVEPPA
                     SLAGAGPEPSPKQPVAEGLLTALQPFLSEALVSQVGACYQFNVILPSGTQSIYFLDLT
                     TGQGRVGHGEPDGIPDVVVEMAEADLQALLSKELRPLGAYMSGRLKVKGDLAVVMKLE
                     AVLKALK"
     exon            237..343
                     /gene="Stoml1"
                     /gene_synonym="1810015E19Rik; SLP1; STORP; UNC24; WPB72"
                     /inference="alignment:Splign:2.1.0"
     exon            344..493
                     /gene="Stoml1"
                     /gene_synonym="1810015E19Rik; SLP1; STORP; UNC24; WPB72"
                     /inference="alignment:Splign:2.1.0"
     exon            494..697
                     /gene="Stoml1"
                     /gene_synonym="1810015E19Rik; SLP1; STORP; UNC24; WPB72"
                     /inference="alignment:Splign:2.1.0"
     exon            698..893
                     /gene="Stoml1"
                     /gene_synonym="1810015E19Rik; SLP1; STORP; UNC24; WPB72"
                     /inference="alignment:Splign:2.1.0"
     exon            894..1109
                     /gene="Stoml1"
                     /gene_synonym="1810015E19Rik; SLP1; STORP; UNC24; WPB72"
                     /inference="alignment:Splign:2.1.0"
     exon            1110..1988
                     /gene="Stoml1"
                     /gene_synonym="1810015E19Rik; SLP1; STORP; UNC24; WPB72"
                     /inference="alignment:Splign:2.1.0"
     regulatory      1958..1963
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Stoml1"
                     /gene_synonym="1810015E19Rik; SLP1; STORP; UNC24; WPB72"
                     /note="hexamer: AATAAA"
     polyA_site      1984
                     /gene="Stoml1"
                     /gene_synonym="1810015E19Rik; SLP1; STORP; UNC24; WPB72"
                     /note="major polyA site"
ORIGIN      
        1 ggagtaaagc cggaagcagt gggaacgagg aggggcggag ctgccacagg ctgggcaggg
       61 cagtctccca gcagaggatc ggggcgtgtc ccggttagaa gtcatgcttg gaaggtctgg
      121 ctaccgggca ctgcccttag gggattttga tcgtttccag cagtcgagct tcggctttct
      181 gggttcgcag aagggctgct tgtccccaga gccgggcagc gtggggccgg gggccgacgc
      241 gccggagagc tggccctcct gtctctgcca tggcctcgtc agtgtcctgg ggttcttgct
      301 gctgctgctc accttcccca tttccggctg gtttgctctg aagattgtgc ccacctatga
      361 gaggatgatt gtgtttcgac tgggccggat ccgtaacccc caggggcctg gcatggttct
      421 tctcctgccc tttattgact ccttccagag ggtagatttg aggacccgag ccttcaacgt
      481 tcctccttgc aagctggcct ctaaggatgg ggctgtgctg tcggtgggag ctgatgtcca
      541 gttccgcatc tgggacccag tgctatccgt gatggctgtg aaggacctga acacagctac
      601 tcgcatgaca gcccacaacg ccatgactaa ggccctgctc agaaggccac tgcaggagat
      661 ccagatggag aagctcaaga tcggtgacca gctcctgctg gagatcaatg acgtgaccag
      721 agcttgggga ctggaggtcg accgtgtaga gctggcagta gaggctgtgt tgcagccacc
      781 gcaagacagc ctgactgtgc ccagcctgga cagcaccctc caacagctgg ccctccactt
      841 gctaggggga agtatgaact cagcggtcgg acatgttcca tccccagggc cagacacctt
      901 ggagatgata aatgaagtgg aacctcctgc ctctcttgct ggggccgggc ctgagcccag
      961 cccgaagcag cccgtggctg aggggctcct cacagccctg caacccttcc tgtcagaggc
     1021 actggtcagc caggttgggg cctgctacca gttcaatgtc atcttgccca gtggcaccca
     1081 gagtatctac ttcctggacc ttactacagg acaaggccgc gtgggacatg gagagcctga
     1141 tggcatccct gacgtggtgg tggagatggc tgaagcagac ttgcaggcct tgttgagcaa
     1201 agaacttcgg cccttagggg cctacatgag tgggcggctg aaggtgaagg gtgacctggc
     1261 cgtggtcatg aagctggagg ctgtactcaa ggccttgaag tagccgtgtt ggttgtccat
     1321 cagacaccta gccctgaacc tggtgccaac ccagagaagc ctcttggaat aggaggcgtt
     1381 ggtttgggcc atggaaaact gaggcctgaa gatgtttcag tcccaacgag gagcccggga
     1441 ggctgggaga catctactgc tggtcacagc tgagtcgggt gtaccacccc ttagcctgtg
     1501 gtagtcctct ggacaggcct ttgctcgttc aatccccaac aaatgcttag tgctgagtcg
     1561 gaacacagag tgaagacaga gagcctggcc tgccctaccc agctgataac ctgaccgacc
     1621 ggagagacga gaagcccaga agcttctgaa tggcagcatg tgaagggtca aagcacatgg
     1681 atcatggctc tgacattcag ggagatcaca gggaagggaa ggtgaggaag ggtggccctc
     1741 aagaaagggt tactgcagct gatccaggcg gccctgccag aacaggctgg gtggggaggg
     1801 catgtgatag aacaatttgc ttttcttatg ggtctgctcc tgaagacacc gggtcctatc
     1861 ctctggctcc atcctgcatg tttaaggagc tgggctcagg gcagcatgtg ggagagccct
     1921 gctgttccgt gcttatagag gcttggagcc tccaacaaat aaatgtgaca tttacggtgt
     1981 ggaatggaaa aaaaaaaaaa aaaa
//
