LOCUS       NM_175096               1985 bp    mRNA    linear   ROD 30-APR-2024
DEFINITION  Mus musculus starch binding domain 1 (Stbd1), mRNA.
ACCESSION   NM_175096
VERSION     NM_175096.3
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 1985)
  AUTHORS   Adams,D.J., Barlas,B., McIntyre,R.E., Salguero,I., van der
            Weyden,L., Barros,A., Vicente,J.R., Karimpour,N., Haider,A.,
            Ranzani,M., Turner,G., Thompson,N.A., Harle,V., Olvera-Leon,R.,
            Robles-Espinoza,C.D., Speak,A.O., Geisler,N., Weninger,W.J.,
            Geyer,S.H., Hewinson,J., Karp,N.A., Fu,B., Yang,F., Kozik,Z.,
            Choudhary,J., Yu,L., van Ruiten,M.S., Rowland,B.D., Lelliott,C.J.,
            Del Castillo Velasco-Herrera,M., Verstraten,R., Bruckner,L.,
            Henssen,A.G., Rooimans,M.A., de Lange,J., Mohun,T.J., Arends,M.J.,
            Kentistou,K.A., Coelho,P.A., Zhao,Y., Zecchini,H., Perry,J.R.B.,
            Jackson,S.P. and Balmus,G.
  CONSRTM   Sanger Mouse Genetics Project
  TITLE     Genetic determinants of micronucleus formation in vivo
  JOURNAL   Nature 627 (8002), 130-136 (2024)
   PUBMED   38355793
REFERENCE   2  (bases 1 to 1985)
  AUTHORS   Kyriakoudi,S., Theodoulou,A., Potamiti,L., Schumacher,F.,
            Zachariou,M., Papacharalambous,R., Kleuser,B., Panayiotidis,M.I.,
            Drousiotou,A. and Petrou,P.P.
  TITLE     Stbd1-deficient mice display insulin resistance associated with
            enhanced hepatic ER-mitochondria contact
  JOURNAL   Biochimie 200, 172-183 (2022)
   PUBMED   35691532
REFERENCE   3  (bases 1 to 1985)
  AUTHORS   Mayeuf-Louchart,A., Lancel,S., Sebti,Y., Pourcet,B., Loyens,A.,
            Delhaye,S., Duhem,C., Beauchamp,J., Ferri,L., Thorel,Q.,
            Boulinguiez,A., Zecchin,M., Dubois-Chevalier,J., Eeckhoute,J.,
            Vaughn,L.T., Roach,P.J., Dani,C., Pederson,B.A., Vincent,S.D.,
            Staels,B. and Duez,H.
  TITLE     Glycogen Dynamics Drives Lipid Droplet Biogenesis during Brown
            Adipocyte Differentiation
  JOURNAL   Cell Rep 29 (6), 1410-1418 (2019)
   PUBMED   31693883
REFERENCE   4  (bases 1 to 1985)
  AUTHORS   Ducommun,S., Deak,M., Zeigerer,A., Goransson,O., Seitz,S.,
            Collodet,C., Madsen,A.B., Jensen,T.E., Viollet,B., Foretz,M.,
            Gut,P., Sumpton,D. and Sakamoto,K.
  TITLE     Chemical genetic screen identifies Gapex-5/GAPVD1 and STBD1 as
            novel AMPK substrates
  JOURNAL   Cell Signal 57, 45-57 (2019)
   PUBMED   30772465
  REMARK    GeneRIF: AMPK-dependent phosphorylation of Gapex-5 (also known as
            GTPase-activating protein and VPS9 domain-containing protein 1
            (GAPVD1)) on Ser902 in hepatocytes and starch-binding domain 1
            (STBD1) on Ser175 in multiple cells/tissues
REFERENCE   5  (bases 1 to 1985)
  AUTHORS   Demetriadou,A., Morales-Sanfrutos,J., Nearchou,M., Baba,O.,
            Kyriacou,K., Tate,E.W., Drousiotou,A. and Petrou,P.P.
  TITLE     Mouse Stbd1 is N-myristoylated and affects ER-mitochondria
            association and mitochondrial morphology
  JOURNAL   J Cell Sci 130 (5), 903-915 (2017)
   PUBMED   28137759
  REMARK    GeneRIF: mouse Stbd1 is a transmembrane endoplasmic reticulum
            (ER)-resident protein with the capacity to induce the formation of
            organized ER structures.
REFERENCE   6  (bases 1 to 1985)
  AUTHORS   Sun,T., Yi,H., Yang,C., Kishnani,P.S. and Sun,B.
  TITLE     Starch Binding Domain-containing Protein 1 Plays a Dominant Role in
            Glycogen Transport to Lysosomes in Liver
  JOURNAL   J Biol Chem 291 (32), 16479-16484 (2016)
   PUBMED   27358407
  REMARK    GeneRIF: results demonstrate that Stbd1 plays a dominant role in
            glycogen transport to lysosomes in liver and that the N-terminal
            transmembrane region and the C-terminal CBM20 domain are critical
            for this function.
REFERENCE   7  (bases 1 to 1985)
  AUTHORS   Yi,H., Fredrickson,K.B., Das,S., Kishnani,P.S. and Sun,B.
  TITLE     Stbd1 is highly elevated in skeletal muscle of Pompe disease mice
            but suppression of its expression does not affect lysosomal
            glycogen accumulation
  JOURNAL   Mol Genet Metab 109 (3), 312-314 (2013)
   PUBMED   23726947
  REMARK    GeneRIF: Stbd1 is highly elevated in skeletal muscle of Pompe
            disease mice but suppression of its expression does not affect
            lysosomal glycogen accumulation.
REFERENCE   8  (bases 1 to 1985)
  AUTHORS   Jiang,S., Heller,B., Tagliabracci,V.S., Zhai,L., Irimia,J.M.,
            DePaoli-Roach,A.A., Wells,C.D., Skurat,A.V. and Roach,P.J.
  TITLE     Starch binding domain-containing protein 1/genethonin 1 is a novel
            participant in glycogen metabolism
  JOURNAL   J Biol Chem 285 (45), 34960-34971 (2010)
   PUBMED   20810658
  REMARK    GeneRIF: Stbd1 is involved in glycogen metabolism by binding to
            glycogen and anchoring it to membranes, thereby affecting its
            cellular localization and its intracellular trafficking to
            lysosomes.
            Erratum:[J Biol Chem. 2011 Nov 11;286(45):39673]
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from AK050416.1.
            
            On Apr 6, 2007 this sequence version replaced NM_175096.2.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK050416.1, BC118661.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374, SAMN00849375
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-1985              AK050416.1         2-1986
FEATURES             Location/Qualifiers
     source          1..1985
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="5"
                     /map="5 47.21 cM"
     gene            1..1985
                     /gene="Stbd1"
                     /gene_synonym="D530019K15Rik; D5Ertd593e"
                     /note="starch binding domain 1"
                     /db_xref="GeneID:52331"
                     /db_xref="MGI:MGI:1261768"
     exon            1..287
                     /gene="Stbd1"
                     /gene_synonym="D530019K15Rik; D5Ertd593e"
                     /inference="alignment:Splign:2.1.0"
     exon            288..1985
                     /gene="Stbd1"
                     /gene_synonym="D530019K15Rik; D5Ertd593e"
                     /inference="alignment:Splign:2.1.0"
     polyA_site      1985
                     /gene="Stbd1"
                     /gene_synonym="D530019K15Rik; D5Ertd593e"
                     /note="putative"
ORIGIN      
        1 gttcgggtga gcggagccct gcactggggc tcgtagtctc cctcagcctc tctcagccat
       61 gggcgccgtc tggtcagccc tgctggtcgg cgggggtcta gctggagcgc tcatcctgtg
      121 gctgctgcgg ggagactctg gggccccggg gaaagacggg gttgcggagc cgccgcagaa
      181 gggcgcacct cctggggagg ctgcggcccc gggagacggt ccgggtggtg gtggcagtgg
      241 cggcctgagc cctgaacctt ccgatcggga gctggtctcc aaagcagagc atcttcgaga
      301 aagcaacgga catttgattt ctgagagcaa agatcttggt aacctgccgg aagcacagcg
      361 gctgcagaat gttggagcag actgggtcaa tgccagagag tttgttcctg ttgggaagat
      421 tccagacaca cactccaggg ccgactctga agcggcaaga aatcaaagcc caggatctca
      481 tggaggagaa tggagactcc ccaaaggaca agaaacagct gtcaaagtag ctggcagtgt
      541 ggccgcaaag ctgccctcca gcagcctgct tgtggacaga gctaaagcag tcagtcagga
      601 ccaggcaggc cacgaggact gggaagtggt gtctaggcac tcatcttggg ggagtgttgg
      661 tttgggtggc agtcttgagg cttctaggtt aagtctaaat cagagaatgg acgacagcac
      721 aaacagtctt gtgggaggaa gaggctggga agtagatggg aaagtggcat ctctgaaacc
      781 tcaacaggtc agcatccagt tccaggtgca ctacaccaca aacaccgatg tgcagttcat
      841 tgcagtgact ggagaccatg agagccttgg gagatggaac acatacatcc cactccacta
      901 ctgcaaagac gggctctggt ctcattctgt cttcctgcct gcagacacag tggtggagtg
      961 gaagttcgtg ttggtagaga ataaggaagt tactcgttgg gaagaatgca gcaatagatt
     1021 cctgcagact ggccatgagg ataaagtggt tcatgggtgg tgggggattc actgactcag
     1081 ttttcagagc atccaagagg ctgcagcaga atgtggacaa ggctaaggct ttagagcgca
     1141 ctgcatagct taaagtaaag gcggtgtgat tccaattgta gccatcaggg ctctttcaga
     1201 tttgctagtg tggcttttgt ccaaaatgta ggaagatgta tgcctgcaga taatgcttcc
     1261 tgtaagctgg cacttgtccc ttattgtatt gactggtttg tgctgacaca tcaggacttg
     1321 aggaattgat catcctgggt agttgcatct tgggtagtac acctgaggta tggactacat
     1381 atgggcaagg agcaactaag caactgcacg ggtacaaggt agagcgccct tagcagctct
     1441 tagactagaa agactacaat aagccccatc aaacacagct aaagcaacac tgtttacatc
     1501 atacggaact gtgaccagta aggatcggag tgaaactcta gacttcctgt tagtttttat
     1561 tccattttaa ctgctgagga taggcgagac attagcaagt acgcctttgt cttagtggct
     1621 gaaagcctat tcagaggtgg tcacccagga agcagagcat gagggattga ggtgtgagat
     1681 gctgaggtgg tttgaagggc tccttgagga ctgggagtaa caggtctgag tctggtacat
     1741 ccctccttta cccacagtgc cctggttgga ccatctctgc tcactgctcc acctcattcc
     1801 tacatggggt caacaaatgg gctgccccag aggcatcttt tccatctgtt aactcttcac
     1861 tctccttaca taccagcgag tgaaattctc tataggacca tactgaagaa tgtctttgcg
     1921 ctgagaagaa ataattaagc tttaagttat aactgaataa ataaatactg agttttaata
     1981 tcttt
//
