LOCUS       XM_017319463            4392 bp    mRNA    linear   ROD 07-FEB-2024
DEFINITION  PREDICTED: Mus musculus signal transducer and activator of
            transcription 1 (Stat1), transcript variant X1, mRNA.
ACCESSION   XM_017319463
VERSION     XM_017319463.3
DBLINK      BioProject: PRJNA169
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000067.7) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Sep 21, 2020 this sequence version replaced XM_017319463.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001635.27-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/01/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4392
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6J"
                     /db_xref="taxon:10090"
                     /chromosome="1"
     gene            1..4392
                     /gene="Stat1"
                     /gene_synonym="2010005J02Rik"
                     /note="signal transducer and activator of transcription 1;
                     Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 1 mRNA, 60 ESTs, 395 long SRA reads, 15
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 22 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:20846"
                     /db_xref="MGI:MGI:103063"
     CDS             517..2766
                     /gene="Stat1"
                     /gene_synonym="2010005J02Rik"
                     /codon_start=1
                     /product="signal transducer and activator of transcription
                     1 isoform X1"
                     /protein_id="XP_017174952.1"
                     /db_xref="GeneID:20846"
                     /db_xref="MGI:MGI:103063"
                     /translation="MSQWFELQQLDSKFLEQVHQLYDDSFPMEIRQYLAQWLEKQDWE
                     HAAYDVSFATIRFHDLLSQLDDQYSRFSLENNFLLQHNIRKSKRNLQDNFQEDPVQMS
                     MIIYNCLKEERKILENAQRFNQAQEGNIQNTVMLDKQKELDSKVRNVKDQVMCIEQEI
                     KTLEELQDEYDFKCKTSQNREGEANGVAKSDQKQEQLLLHKMFLMLDNKRKEIIHKIR
                     ELLNSIELTQNTLINDELVEWKRRQQSACIGGPPNACLDQLQSWFTIVAETLQQIRQQ
                     LKKLEELEQKFTYEPDPITKNKQVLSDRTFLLFQQLIQSSFVVERQPCMPTHPQRPLV
                     LKTGVQFTVKLRLLVKLQELNYNLKVKVSFDKDVNEKNTVKGFRKFNILGTHTKVMNM
                     EESTNGSLAAEFRHLQLKEQKNAGNRTNEGPLIVTEELHSLSFETQLCQPGLVIDLET
                     TSLPVVVISNVSQLPSGWASILWYNMLVTEPRNLSFFLNPPCAWWSQLSEVLSWQFSS
                     VTKRGLNADQLSMLGEKLLGPNAGPDGLIPWTRFCKENINDKNFSFWPWIDTILELIK
                     KHLLCLWNDGCIMGFISKERERALLKDQQPGTFLLRFSESSREGAITFTWVERSQNGG
                     EPDFHAVEPYTKKELSAVTFPDIIRNYKVMAAENIPENPLKYLYPNIDKDHAFGKYYS
                     RPKEAPEPMELDDPKRTGYIKTELISVSEVHPSRLQTTDNLLPMSPEEFDEMSRIVGP
                     EFDSMMSTV"
ORIGIN      
        1 ggcgggacgc cctctagcct tttttcctgc ccggtacttt cggttttcag cgccgagtct
       61 gtcaaagctc cctggagacc tccgggaccg cgcccctcag acccacttgg gacactgctg
      121 agcggcgcag agagatttgc ccagactcga gctcctgcgt gcagtgagtg agtgagagcc
      181 aggtgcggat ccgggtgcgg gtgcgggtgg aagtggggcg ccctctcctc ggacctgggg
      241 tctgctgccc acaggtgacc tgtcatcccg cagagagaac gccaggagcc ggatcgcttg
      301 cccaactctt ggcgctgctt ggctctctta tcctgccgtt ctcacttcta ggtcgtttca
      361 gctctgctcc ataccctgag ccggcgccac gccgccgcgc atgcaactgg catataactt
      421 gctgtgtgtg gtgattgctt gtgttgaatc ccgaacctgc acccggagac agcccagtaa
      481 gtctacgtgg gaacggaagc atttggaatc tcaaggatgt cacagtggtt cgagcttcag
      541 cagctggact ccaagttcct ggagcaggtc caccagctgt acgatgacag tttccccatg
      601 gaaatcagac agtacctggc ccagtggctg gaaaagcaag actgggagca cgctgcctat
      661 gatgtctcgt ttgcgaccat ccgcttccat gacctcctct cacagctgga cgaccagtac
      721 agccgctttt ctctggagaa taatttcttg ttgcagcaca acatacggaa aagcaagcgt
      781 aatctccagg ataacttcca agaagatccc gtacagatgt ccatgatcat ctacaactgt
      841 ctgaaggaag aaaggaagat tttggaaaat gcccaaagat ttaatcaggc ccaggaggga
      901 aatattcaga acactgtgat gttagataaa cagaaggagc tggacagtaa agtcagaaat
      961 gtgaaggatc aagtcatgtg catagagcag gaaatcaaga ccctagaaga attacaagat
     1021 gaatatgact ttaaatgcaa aacctctcag aacagagaag gtgaagccaa tggtgtggcg
     1081 aagagcgacc aaaaacagga acagctgctg ctccacaaga tgtttttaat gcttgacaat
     1141 aagagaaagg agataattca caaaatcaga gagttgctga attccatcga gctcactcag
     1201 aacactctga ttaatgacga gctcgtggag tggaagcgaa ggcagcagag cgcctgcatc
     1261 gggggaccgc ccaacgcctg cctggatcag ctgcaaagct ggttcaccat tgttgcagag
     1321 accctgcagc agatccgtca gcagcttaaa aagctggagg agttggaaca gaaattcacc
     1381 tatgagcccg accctattac aaaaaacaag caggtgttgt cagatcgaac cttcctcctc
     1441 ttccagcagc tcattcagag ctccttcgtg gtagaacgac agccgtgcat gcccactcac
     1501 ccgcagaggc ccctggtctt gaagactggg gtacagttca ctgtcaagct gagactgttg
     1561 gtgaaattgc aagagctgaa ctataacttg aaagtgaaag tctcatttga caaagatgtg
     1621 aacgagaaaa acacagttaa aggatttcgg aagttcaaca tcttgggtac gcacacaaaa
     1681 gtgatgaaca tggaagaatc caccaacgga agtctggcag ctgagttccg acacctgcaa
     1741 ctgaaggaac agaaaaacgc tgggaacaga actaatgagg ggcctctcat tgtcaccgaa
     1801 gaacttcact ctcttagctt tgaaacccag ttgtgccagc caggcttggt gattgacctg
     1861 gagaccacct ctcttcctgt cgtggtgatc tccaacgtca gccagctccc cagtggctgg
     1921 gcgtctatcc tgtggtacaa catgctggtg acagagccca ggaatctctc cttcttcctg
     1981 aaccccccgt gcgcgtggtg gtcccagctc tcagaggtgt tgagttggca gttttcatca
     2041 gtcaccaaga gaggtctgaa cgcagaccag ctgagcatgc tgggagagaa gctgctgggc
     2101 cctaatgctg gccctgatgg tcttattcca tggacaaggt tttgtaagga aaatattaat
     2161 gataaaaatt tctccttctg gccttggatt gacaccatcc tagagctcat taagaagcac
     2221 ctgctgtgcc tctggaatga tgggtgcatt atgggcttca tcagcaagga gcgagaacgc
     2281 gctctgctca aggaccagca gccagggacg ttcctgctta gattcagtga gagctcccgg
     2341 gaaggggcca tcacattcac atgggtggaa cggtcccaga acggaggtga acctgacttc
     2401 catgccgtgg agccctacac gaaaaaagaa ctttcagctg ttactttccc agatattatt
     2461 cgcaactaca aagtcatggc tgccgagaac ataccagaga atcccctgaa gtatctgtac
     2521 cccaatattg acaaagacca cgcctttggg aagtattatt ccagaccaaa ggaagcacca
     2581 gaaccgatgg agcttgacga ccctaagcga actggataca tcaagactga gttgatttct
     2641 gtgtctgaag tccacccttc tagacttcag accacagaca acctgcttcc catgtctcca
     2701 gaggagtttg atgagatgtc ccggatagtg ggccccgaat ttgacagtat gatgagcaca
     2761 gtataaacac gaatttctct ctggcgacat ttttttccca tctgtgattc cttcctgcta
     2821 ctgttccttc atatgcagta tttctaggga aatgcaagaa agaaagagca tcacatttgc
     2881 tgagcactgc tggtagaaag tggatatttc tctaattaga aacctgttac tctgaaggac
     2941 ttcatgcatc ttactgaagg tgaaatggaa agtcacttaa cacaaaatgg attttgtaaa
     3001 caaagaccaa gagatccacc caagcaccag gactagagtg cgagtatttg gggcaaggtg
     3061 aggagaacgg tcactttagt aatggtctgt aatcagtgcc caagtgctgc acatcactgg
     3121 aaagagacat acttatgggg gaggggcctt cttgatggag gaatgtttct gtcccgggag
     3181 acattggcac ttcccctctc ctggatggcc ggaagtcttc cactgtttta catatggcac
     3241 agttcaaagt caactttaga tccaatgctc tatcaaacta tagtgggcat ccttcatgtg
     3301 agtgggaaga aaacaaccgt gctccttact gcagcttctg ccaaggcatg gttgctctcc
     3361 tcagggacta gctttgttgg tggcaatggc tacacaaaac taaacaccaa cagaagtaag
     3421 accattttca tgagtactcc atcaagttaa agggtttttg ttgtcttttt ggtcatggat
     3481 tgaataaaat tgtctttgca catccattaa gggggccagc tttcttaaag caatttttct
     3541 ttttttttaa ctaaaattag atataggtga actcatgttt tttagtgggc tgaacttatc
     3601 ggttttagct ggttgtctta attagccata aacttggaga aagcagtgac ttcttgaatc
     3661 cttagccaaa tatgagtatc agataatttt attatttttt tttcgagaca gggtttctct
     3721 gtgtagccct ggctattctg gaactcactc tgtagatcag gctggcctgg aactcagaaa
     3781 tccgcctgtc tctgcctccc gagtgctggg attaaaggtg tgcaccacca atgcctggtg
     3841 agataacttt aaagaactcc ctataaatgc atgagaacca ctgttactga tgaatgtggt
     3901 tttttgacaa ctacattcac aaatggcctg tcttgtgttt tgtcaccgtt ttgagggatg
     3961 atgttttgtg gcacgtgtgt gatcacagcc tgatggttct ggtcgtgggt tggttcttct
     4021 gggccagctt tcacagactg ctgcgcagct gcacctacag tgctgcccca taatactgtt
     4081 tcactttggt gaagatcagc ccaccttaca ccccgagtgc aggtgtgaac cacggtaagt
     4141 gtgcacagtc cttagggaaa acagggacgc agaggcctgc ctcctctctt ttccatgcca
     4201 aaatgaaatg accaagaaac aaaacattta aaaagttgtt tctaaatgct gagacctaac
     4261 cattgcttat atactgttgt ctgttgaaac agtttgttac aatttcattc tgttgaacta
     4321 ggtgagactt taagaaatgt tgaaattatg ttaatttcct attattattt aatataaaga
     4381 tatttaaaat gt
//
