LOCUS       NM_029682               2024 bp    mRNA    linear   ROD 31-DEC-2024
DEFINITION  Mus musculus STAM binding protein like 1 (Stambpl1), transcript
            variant 1, mRNA.
ACCESSION   NM_029682
VERSION     NM_029682.5
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 2024)
  AUTHORS   Zhang,H., Wang,Z., Zhang,J., Li,Z., Liu,J., Yu,J., Zhao,Y., Guo,F.,
            Chen,W.D. and Wang,Y.D.
  TITLE     A MYC-STAMBPL1-TOE1 positive feedback loop mediates EGFR stability
            in hepatocellular carcinoma
  JOURNAL   Cell Rep 43 (10), 114812 (2024)
   PUBMED   39388352
REFERENCE   2  (bases 1 to 2024)
  AUTHORS   Lavorgna,A. and Harhaj,E.W.
  TITLE     An RNA interference screen identifies the Deubiquitinase STAMBPL1
            as a critical regulator of human T-cell leukemia virus type 1 tax
            nuclear export and NF-kappaB activation
  JOURNAL   J Virol 86 (6), 3357-3369 (2012)
   PUBMED   22258247
  REMARK    Erratum:[J Virol. 2012 May;86(9):5409]
REFERENCE   3  (bases 1 to 2024)
  AUTHORS   Kitajima,K., Matsumoto,K., Tahara,M., Takahashi,H., Nakamura,T. and
            Nakamura,T.
  TITLE     A newly identified AMSH-family protein is specifically expressed in
            haploid stages of testicular germ cells
  JOURNAL   Biochem Biophys Res Commun 309 (1), 135-142 (2003)
   PUBMED   12943674
  REMARK    GeneRIF: AMSH-FP is specifically expressed in haploid stages of
            testicular germ cells and has a functional role in spermiogenesis
            [AMSH-FP]
REFERENCE   4  (bases 1 to 2024)
  AUTHORS   Takahashi,H., Koshimizu,U. and Nakamura,T.
  TITLE     A novel transcript encoding truncated LIM kinase 2 is specifically
            expressed in male germ cells undergoing meiosis
  JOURNAL   Biochem Biophys Res Commun 249 (1), 138-145 (1998)
   PUBMED   9705845
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC165239.3, AB010121.1 and AC102285.7.
            
            On Feb 10, 2018 this sequence version replaced NM_029682.4.
            
            Sequence Note: This RefSeq record was created from transcript and
            genomic sequence data to make the sequence consistent with the
            reference genome assembly. The genomic coordinates used for the
            transcript record were based on transcript alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AB066211.1, BC023097.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849375, SAMN00849380
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on manual assertion, conservation,
                                      expression, longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-346               AC165239.3         191147-191492
            347-1774            AB010121.1         1-1428
            1775-2024           AC102285.7         68874-69123
FEATURES             Location/Qualifiers
     source          1..2024
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="19"
                     /map="19 29.35 cM"
     gene            1..2024
                     /gene="Stambpl1"
                     /gene_synonym="1700095N21Rik; 8230401J17Rik; ALMalpha;
                     AMSH-FP"
                     /note="STAM binding protein like 1"
                     /db_xref="GeneID:76630"
                     /db_xref="MGI:MGI:1923880"
     exon            1..403
                     /gene="Stambpl1"
                     /gene_synonym="1700095N21Rik; 8230401J17Rik; ALMalpha;
                     AMSH-FP"
                     /inference="alignment:Splign:2.1.0"
     exon            404..483
                     /gene="Stambpl1"
                     /gene_synonym="1700095N21Rik; 8230401J17Rik; ALMalpha;
                     AMSH-FP"
                     /inference="alignment:Splign:2.1.0"
     CDS             454..1764
                     /gene="Stambpl1"
                     /gene_synonym="1700095N21Rik; 8230401J17Rik; ALMalpha;
                     AMSH-FP"
                     /EC_number="3.1.2.15"
                     /note="isoform 1 is encoded by transcript variant 1;
                     AMSH-family protein; AMSH-like protease; AMSH-LP"
                     /codon_start=1
                     /product="AMSH-like protease isoform 1"
                     /protein_id="NP_083958.3"
                     /db_xref="CCDS:CCDS29756.1"
                     /db_xref="GeneID:76630"
                     /db_xref="MGI:MGI:1923880"
                     /translation="MEQPFTVNSLKKLAAMPDHTDVSLSPEERVRALSKLGCNISINE
                     DITPRRYFRSGVEMERMASVYLEEGNLENAFVLYNKFITLFVEKLPSHRDYQQCAVPE
                     KQDIMKKLKEIAFPRTDELKTDLLRKYNIEYQEYLQSKNKYKAEILKKLEHQRLIEAE
                     RQRIAQMRQQQLESEQFLFFEDQLKKQELARGQIRGQDSPVLSEQTDGSALSCFSTHQ
                     SNSLRNAFADHPHKSDGSNFANYSPPVNRALKPAATLSAVQNLVVEGLRCVVLSRDLC
                     HKFLLLADSNTVRGIETCGILCGKLTHNEFTITHVVVPKQSAGPDYCDVENVEELFNV
                     QDQHGLLTLGWIHTHPTQTAFLSSVDLHTHCSYQLMLPEAIAIVCSPKHKDTGIFRLT
                     NAGMLEVSTCKKKGFHPHTKDPKLFSICSHVLVKDIKTTVLDLR"
     exon            484..701
                     /gene="Stambpl1"
                     /gene_synonym="1700095N21Rik; 8230401J17Rik; ALMalpha;
                     AMSH-FP"
                     /inference="alignment:Splign:2.1.0"
     exon            702..777
                     /gene="Stambpl1"
                     /gene_synonym="1700095N21Rik; 8230401J17Rik; ALMalpha;
                     AMSH-FP"
                     /inference="alignment:Splign:2.1.0"
     exon            778..873
                     /gene="Stambpl1"
                     /gene_synonym="1700095N21Rik; 8230401J17Rik; ALMalpha;
                     AMSH-FP"
                     /inference="alignment:Splign:2.1.0"
     exon            874..1231
                     /gene="Stambpl1"
                     /gene_synonym="1700095N21Rik; 8230401J17Rik; ALMalpha;
                     AMSH-FP"
                     /inference="alignment:Splign:2.1.0"
     exon            1232..1356
                     /gene="Stambpl1"
                     /gene_synonym="1700095N21Rik; 8230401J17Rik; ALMalpha;
                     AMSH-FP"
                     /inference="alignment:Splign:2.1.0"
     exon            1357..1494
                     /gene="Stambpl1"
                     /gene_synonym="1700095N21Rik; 8230401J17Rik; ALMalpha;
                     AMSH-FP"
                     /inference="alignment:Splign:2.1.0"
     exon            1495..1607
                     /gene="Stambpl1"
                     /gene_synonym="1700095N21Rik; 8230401J17Rik; ALMalpha;
                     AMSH-FP"
                     /inference="alignment:Splign:2.1.0"
     exon            1608..1707
                     /gene="Stambpl1"
                     /gene_synonym="1700095N21Rik; 8230401J17Rik; ALMalpha;
                     AMSH-FP"
                     /inference="alignment:Splign:2.1.0"
     exon            1708..2024
                     /gene="Stambpl1"
                     /gene_synonym="1700095N21Rik; 8230401J17Rik; ALMalpha;
                     AMSH-FP"
                     /inference="alignment:Splign:2.1.0"
     regulatory      1999..2004
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Stambpl1"
                     /gene_synonym="1700095N21Rik; 8230401J17Rik; ALMalpha;
                     AMSH-FP"
                     /note="hexamer: AATAAA"
     polyA_site      2019
                     /gene="Stambpl1"
                     /gene_synonym="1700095N21Rik; 8230401J17Rik; ALMalpha;
                     AMSH-FP"
                     /note="major polyA site"
ORIGIN      
        1 gggggcggac catcgctgtg acaatttcat tccctacgtt gctgcggcag agattcagag
       61 gccattggcc tgtgcgttgt tttgcaaggg agctggggct gtcccgccag acagaagaga
      121 gagtccaagc cacggaaggc atcagagctc gaccgaccaa gagcaaagag aacccagagg
      181 cccggactag accagcctgg gagcgactca cagcctggtg ccaccgtcac caagcgccgg
      241 tgccttgcgg agcagccgct gccgcccggg ctgcagaggc cacacggatg cccgagccac
      301 gcggcccgcg cagggacagt cgtcgcagtc gtcatcccac acaagctccg gacgcgcacg
      361 actgctggtg agtggcccca cacgtgtgcc cgctggcccc gagatgaagt gactgagaag
      421 gagtgagcac cttgcctttg cagacaggac agcatggagc agccattcac tgtgaattca
      481 ctgaaaaagt tagctgctat gcctgaccat acagatgttt ctctaagtcc agaggagcgg
      541 gtccgcgccc taagcaaact tggttgtaat atctccatta atgaagatat caccccacgc
      601 cgttacttca ggtccggagt ggaaatggaa aggatggcat ctgtgtattt ggaagaagga
      661 aacctggaaa atgcctttgt tctttataac aaatttataa cgttatttgt agaaaaactt
      721 cccagccacc gagattacca gcagtgtgca gttccagaga agcaggatat tatgaagaaa
      781 ctgaaggaga ttgcgttccc aaggacagac gaattgaaaa cggacctgct aaggaaatat
      841 aacatagaat accaagagta tttgcaaagt aaaaacaaat ataaagccga aattctcaaa
      901 aagttggaac atcagagact gatagaggca gagcgccagc ggatagctca gatgcgccag
      961 cagcaactag agtctgaaca gttcctgttt tttgaagacc aactcaagaa gcaggagttg
     1021 gctcgaggcc agattcgagg tcaggactct ccggtgttgt ctgagcagac tgacggaagt
     1081 gcgctgtcct gcttttccac ccaccagagc aactctctga ggaacgcatt tgcagatcac
     1141 cctcataaaa gtgatggaag caatttcgct aactactctc ctcccgtgaa cagggcccta
     1201 aagccagcag ccaccctgag tgctgttcag aatttggtgg ttgaagggct gaggtgtgta
     1261 gttttatcaa gagatctttg ccataaattt ctgctgctgg ctgactctaa cacagtgaga
     1321 ggaatagaga cctgtgggat cctctgtgga aaactgacac acaatgaatt caccattact
     1381 catgtggttg tgccaaagca gtctgctggc ccagactatt gcgatgtgga gaacgtcgaa
     1441 gaattattca atgttcagga tcaacatggt ctcctcacac tgggatggat ccatacacac
     1501 cccacgcaaa cggcattcct gtccagtgtg gatctccaca ctcactgctc ctaccagctt
     1561 atgttgccag aggccattgc cattgtgtgt tccccaaagc ataaagacac cggcattttc
     1621 aggctcacca acgctggcat gcttgaggtt tctacttgta aaaagaaggg cttccatcct
     1681 cacaccaagg accccaagct gttcagtata tgcagccatg tgttagtaaa ggacataaaa
     1741 acaactgtgt tggatctgag gtgacatgcc ctaactgtaa gaccatctgt ggacgtgtgt
     1801 gactgccgaa tttcttatga tgttttcaga agtgactgat attttatatt tatatatttt
     1861 agaccaaaac tttgatattt attgttcttg cacattttga agtttccttt tttttttttt
     1921 tttgggttgc tgcgtctcaa acgaggccac gtggtgttca gcctatacct attaatatac
     1981 ccaagtgatg ccatcggaaa taaattgtgc tgcaaataac aagc
//
