LOCUS       XM_036154767            5244 bp    mRNA    linear   ROD 10-APR-2023
DEFINITION  PREDICTED: Mus musculus stromal antigen 1 (Stag1), transcript
            variant X6, mRNA.
ACCESSION   XM_036154767
VERSION     XM_036154767.1
DBLINK      BioProject: PRJNA169
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000075.7) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Apr 28, 2023 this sequence was replaced by
            NM_001420289.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001635.27-RS_2023_04
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 04/05/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5244
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6J"
                     /db_xref="taxon:10090"
                     /chromosome="9"
     gene            1..5244
                     /gene="Stag1"
                     /gene_synonym="SA-1; Scc3"
                     /note="stromal antigen 1; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 2
                     mRNAs, 86 ESTs, 538 long SRA reads, 1 Protein, and 99%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 17 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:20842"
                     /db_xref="MGI:MGI:1098658"
     CDS             367..3732
                     /gene="Stag1"
                     /gene_synonym="SA-1; Scc3"
                     /codon_start=1
                     /product="cohesin subunit SA-1 isoform X4"
                     /protein_id="XP_036010660.1"
                     /db_xref="GeneID:20842"
                     /db_xref="MGI:MGI:1098658"
                     /translation="MFRNMQNAEIIRKMTEEFDEDSGDYPLTMPGPQWKKFRSNFCEF
                     IGVLIRQCQYSIIYDEYMMDTVISLLTGLSDSQVRAFRHTSTLAAMKLMTALVNVALN
                     LSIHQDNTQRQYEAERNKMIGKRANERLELLLQKRKELQENQDEIENMMNSIFKGIFV
                     HRYRDAIAEIRAICIEEIGVWMKMYSDAFLNDSYLKYVGWTLHDRQGEVRLKCLKALQ
                     SLYTNRELFPKLELFTNRFKDRIVSMTLDKEYDVAVEAIRLVTLILHGSEEALSNEDC
                     ENVYHLVYSAHRPVAVAAGEFLHKKLFSRHDPQAEEALAKRRGRNSPNGNLIRMLVLF
                     FLESELHEHAAYLVDSLWESSQELLKDWECMTELLLEEPVQGEEAMSDRQESALIELM
                     VCTIRQAAEAHPPVGRGTGKRVLTAKERKTQIDDRNKLTEHFIITLPMLLSKYSADAE
                     KVANLLQIPQYFDLEIYSTGRMEKHLDALLKQIKFVVEKHVESDVLEACSKTYSILCS
                     EEYTIQNRVDIARSQLIDEFVDRFNHSVEDLLQEGEEADDDDIYNVLSTLKRLTSFHN
                     AHDLTKWDLFGNCYRLLKTGIEHGAMPEQIVVQALQCSHYSILWQLVKITDGSPSKED
                     LLVLRKTVKSFLAVCQQCLSNVNTPVKEQAFMLLCDLLMIFSHQLMTGGREGLQPLVF
                     NPDTGLQSELLSFVMDHVFIDQDEENQSMEGDEEDEANKIEALHKRRNLLAAFSKLII
                     YDIVDMHAAADIFKHYMKYYNDYGDIIKETLSKTRQIDKIQCAKTLILSLQQLFNELV
                     QEQGPNLDRTSAHVSGIKELARRFALTFGLDQIKTREAVATLHKDGIEFAFKYQNQKG
                     QEYPPPNLAFLEVLSEFSSKLLRQDKKTVHSYLEKFLTEQMMERREDVWLPLISYRNS
                     LVTGGEDDRMSVNSGSSSSKTSSVRSKKGRPPLHRKRVEDESLDNTWLNRTDTMIQTP
                     GPLPTPQLTSTVLRENSRPMGEQIQEPESEHGSEPDFLHNPQMQISWLGQPKLEDLNR
                     KDRTGMNYMKVRAGVRHAVRGLMEEDAEPIFEDVMMSSRSQLEDMNEEFEDTMVIDLP
                     PSRNRRERAELRPDFFDSAAIIEDDSGFGMPMF"
ORIGIN      
        1 attggcgtgt ggaaaatgcc accagatggc gggttaggat tgcagctccg ttgaaggcgc
       61 ggcccccgct cccgaacccc cggcgaccac cccgtaacca cccccccacc tcgggaataa
      121 cacaccggag acttttgggg ggaaactagg tcgacggccg acagcgcccg gatgggcagc
      181 tgagtcaaca aataagaaac ctcgaaaatc tccaggagaa aagagcagaa ttgaagctgg
      241 aattcgagga gcaggtcgtg gaagagccaa tgggcacccc caacagaacg gcgacgggga
      301 tcctgtcacc ttatttgagg tggtgaagct ggggaagagt gcaatgcagg tacggtcaga
      361 atagagatgt ttcgaaatat gcagaacgca gaaataatca gaaaaatgac tgaagaattt
      421 gatgaggaca gtggtgacta cccccttaca atgcctggtc ctcagtggaa aaaatttcgt
      481 tccaattttt gtgaatttat tggagtcctg attcgacagt gtcaatatag cataatttat
      541 gatgaatata tgatggacac cgtaatttcc cttttgactg gtttgtcaga ctcccaagtc
      601 agagctttta ggcatacaag tacccttgct gcaatgaagc tgatgactgc tctggtgaat
      661 gttgctttaa acctcagtat tcatcaagat aatacacaga ggcaatatga agctgagaga
      721 aataaaatga ttgggaagag agccaatgaa agactggagt tactacttca gaaacgtaaa
      781 gagctacaag aaaatcaaga tgaaattgaa aatatgatga actctatctt taagggtata
      841 tttgttcatc gataccgtga tgcaattgct gaaattcgag ccatctgtat tgaagaaatt
      901 ggagtgtgga tgaaaatgta tagcgatgcc ttcctaaatg acagttactt gaaatatgta
      961 ggatggactc ttcacgatag gcaaggggaa gtcagactga agtgtttgaa agctctacaa
     1021 agcctgtata ccaatagaga attattcccc aaattggagc tatttacaaa tcgattcaag
     1081 gatcgcattg tatcaatgac tcttgacaaa gaatatgatg ttgctgtgga agcaatccga
     1141 ttggttactc tgatccttca tggcagtgaa gaagctcttt ccaacgaaga ctgtgaaaat
     1201 gtttaccatt tggtgtattc agcacatcgc cctgttgctg tggcagctgg agagttccta
     1261 cacaaaaagc tgttcagcag acatgaccca caagcagagg aagcgttagc gaagaggaga
     1321 ggaaggaaca gtccaaacgg gaacctcatt aggatgcttg ttcttttctt tctggaaagt
     1381 gagttacatg aacatgcagc ctacttggtg gacagcttgt gggagagctc tcaagaactg
     1441 ttgaaagact gggaatgtat gacagagtta ctattagaag aacctgttca aggagaagaa
     1501 gcaatgtctg accgtcaaga gagtgctctt atagagctaa tggtctgtac aattcgtcag
     1561 gcagctgagg cacatcctcc agtgggaagg ggtactggca agagagtgct aacagccaaa
     1621 gaaaggaaaa ctcaaattga tgataggaac aaattaactg aacattttat cattacactt
     1681 cctatgttac tatcaaagta ttctgcagat gctgagaagg tagcaaactt gctgcaaatt
     1741 ccacagtatt ttgatctaga aatctacagc acaggtcgga tggaaaagca cctggatgct
     1801 ttattaaaac aaattaagtt tgttgtagag aaacatgtag aatcagatgt cctagaagcc
     1861 tgcagtaaaa cctacagcat tttatgcagt gaagagtata ccattcagaa tcgagttgat
     1921 attgctcgga gccaactgat tgatgaattt gtagatcgat tcaatcattc tgtagaagac
     1981 ctgttgcaag agggtgaaga agctgacgat gatgatatct acaatgttct ttccacctta
     2041 aagcgtttaa cttcttttca caatgctcat gatctcacta aatgggatct atttggtaat
     2101 tgctacagac tattgaagac tggaattgaa catggagcta tgccagaaca gatagtcgta
     2161 caagcactgc agtgttccca ttactcaatt ctgtggcagt tggtgaaaat tactgacgga
     2221 tctccttcca aagaggattt gttggtattg aggaaaacag tgaagtcttt tctggctgtt
     2281 tgccaacagt gcctatctaa tgttaatact ccagttaagg aacaggcttt catgctgctc
     2341 tgtgatcttt taatgatttt tagccaccaa ttaatgacag gtggcagaga gggccttcag
     2401 cctttggtgt ttaatccaga tactggactc cagtctgaac tcctcagttt tgtgatggat
     2461 catgttttca ttgaccaaga tgaggaaaac caaagcatgg agggtgatga ggaagatgaa
     2521 gctaataaaa ttgaagcctt acataaaagg aggaacctgc ttgctgcctt cagcaaactt
     2581 atcatttatg atattgttga catgcacgca gctgcagaca tctttaaaca ctacatgaag
     2641 tattacaatg actatggtga tattattaag gaaacactga gtaagaccag gcagattgat
     2701 aaaattcagt gtgctaagac tctcattctc agtctgcaac agttgtttaa tgaacttgtt
     2761 caagaacaag gtcctaatct ggataggaca tctgcccacg tcagtgggat taaagaactg
     2821 gcacgtcgtt ttgcccttac atttggattg gaccagatca agacccgaga agctgttgcc
     2881 acacttcaca aggatggaat agagtttgcc tttaaatacc agaatcagaa aggacaagaa
     2941 tacccacccc ctaatctggc ttttctagaa gtactaagtg aattttcttc taaactcctt
     3001 cgacaggaca agaaaactgt tcattcgtat cttgaaaaat tcctcaccga gcagatgatg
     3061 gaaaggaggg aggatgtgtg gcttccactc atctcgtata gaaactcatt agtcactgga
     3121 ggtgaagatg acaggatgtc tgtgaacagt ggaagtagca gcagtaaaac gtcctcagta
     3181 aggagtaaga aaggaagacc cccactgcac agaaaacgag tagaagatga aagtctggat
     3241 aacacatggc taaataggac tgacacgatg attcagactc ctggaccctt gccaacccca
     3301 cagctcacct ccacggtact tagagaaaac agccgtccca tgggagagca gattcaggaa
     3361 cctgagtctg agcatggctc tgaaccagac tttttacata atccccagat gcagatctct
     3421 tggttaggcc agccgaagtt agaagacttg aatcggaagg acagaacagg gatgaactac
     3481 atgaaagtaa gagctggagt ccggcacgcc gttcggggtc taatggagga agatgctgag
     3541 cccatctttg aagatgtgat gatgtcatca cggagccagt tagaagacat gaatgaagaa
     3601 tttgaagaca ccatggttat tgatttgccc ccatcaagaa atcgccgaga gagagctgag
     3661 ctaaggccag acttctttga ctctgcagct atcatagaag atgattcagg atttggaatg
     3721 cctatgttct gaagtctgaa gaaaatttac aaatctggaa ctctattatt tagagctaga
     3781 ggcctatata ctgtgatagc ttgtatgggg gaagaaacgc ttttgatgtg atcgggtttg
     3841 ttttgtaatc aaatgattaa aggttggtcc cttttgcagt gacagagcag catgtcagtc
     3901 acccatggaa atgttggtga atgtcacctc ggaaagactg accaaaaaaa tcatttgtac
     3961 tctaatgttg gacttatctc agtacagatg tgtgtgtgtt tttctgaaag gaggaagata
     4021 ttttaaattt ttaaaacagc tgtcaaaata aacactgtta tacacctgtt ttatgaaaat
     4081 cagcattgag taaaaaaaat atttttaact ttattttcct gttgtacaat ttaaaaaccg
     4141 ttttaacatt ttgccttttt atgttttaaa agctaaccat ttttattaaa ctatgagtaa
     4201 gcagctcgtt ctaatcgccg aagagtgttt ttggagctcg ctgggttttg ttgaccttgt
     4261 aaagcagaca ttgaaggaac agagcatgga caagctaaaa tagagttcta acatcgtgca
     4321 tctctgccaa aaaccacacg ccctctgtgg atggatggga atccccagat tttatatact
     4381 cttgaataaa aaggtttatt tttatttata agtgggcata agataagtgc ccatgcagcc
     4441 atttttccaa cagatgctgt acaccgttca ttttctatag aatagtgaga ttcaaataca
     4501 gtgcattttc tattggtctt tgttctgtgc atttttagca acttctacca gcaaataaac
     4561 tattctcagt aaaacaaaaa tggttctcaa gttatcagtc tcactgttgt taacacttgt
     4621 ttcatgccct gccaaagtca cgttacacag acttccgttt tcttatagtc atgaaatttt
     4681 cctttgccat tcagaagtaa ttttaagatg tgtaacgtaa ctgtcttccc atgcactcag
     4741 tatcccctca acccactaat gttgtgaaat gtttaccaat catagatgta tgtgctgcat
     4801 agaagtctgt gcttagaagg tggcgttcta agcttaccgt gaaacacagc tacatttcag
     4861 tgttaagtgt gcatattaag aaaaattctt ttggagaaag aaattctgaa tcttcgggac
     4921 agtcttcagt ggcttagagt tacaatcagc ttacttttat gacttgctat tattttaaaa
     4981 atccacatag ctttccctga ttttagtgta ggcttccaaa tttccaaacc agtctgtcca
     5041 cagctgtttc tgggctggtt ttttaaaata gctgcaacag aattgagagg ctttcccttt
     5101 ttaccaaaaa tgaacatttt ttaaaagtat atgaactcta tgattatctt ttgtgtggga
     5161 aaataaaata cgattttatt catcctttta gtagacaaga tttttctcaa catttgtaca
     5221 gttcagagat ttaaaaaaaa aaaa
//
