LOCUS       NM_199319                602 bp    mRNA    linear   ROD 07-AUG-2023
DEFINITION  Mus musculus SSX member B5 (Ssxb5), mRNA.
ACCESSION   NM_199319 XM_486614
VERSION     NM_199319.3
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 602)
  AUTHORS   Chen YT, Alpen B, Ono T, Gure AO, Scanlan MA, Biggs WH 3rd, Arden
            K, Nakayama E and Old LJ.
  TITLE     Identification and characterization of mouse SSX genes: a multigene
            family on the X chromosome with restricted cancer/testis expression
  JOURNAL   Genomics 82 (6), 628-636 (2003)
   PUBMED   14611804
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from BX000455.7.
            
            On Jun 22, 2007 this sequence version replaced NM_199319.2.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AY244796.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849384 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-114               BX000455.7         8420-8533
            115-229             BX000455.7         8988-9102
            230-319             BX000455.7         9399-9488
            320-369             BX000455.7         9961-10010
            370-445             BX000455.7         10624-10699
            446-562             BX000455.7         13555-13671
            563-602             BX000455.7         14076-14115
FEATURES             Location/Qualifiers
     source          1..602
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="X"
                     /map="X 4.0 cM"
     gene            1..602
                     /gene="Ssxb5"
                     /note="SSX member B5"
                     /db_xref="GeneID:387586"
                     /db_xref="MGI:MGI:2446774"
     exon            1..114
                     /gene="Ssxb5"
                     /inference="alignment:Splign:2.1.0"
     CDS             79..558
                     /gene="Ssxb5"
                     /note="synovial sarcoma, X member B, breakpoint 5;
                     synovial sarcoma, X member B5"
                     /codon_start=1
                     /product="SSX member B5"
                     /protein_id="NP_955023.1"
                     /db_xref="CCDS:CCDS30001.1"
                     /db_xref="GeneID:387586"
                     /db_xref="MGI:MGI:2446774"
                     /translation="MEVLYEPKNNCKAFQDISTYFSDEEWGKLTQWQKSAYVYMKRNY
                     IRMTDLGVNVNQPVFMRGKEQAKQFLVEGIEDHDSEDECFEESFGVTPRKRMKLTSVT
                     ISIHNVEGSLASGENDSNLAETDGIQVNVWSHRLRERKYRVIYSEISDPEEEEDDDY"
     exon            115..229
                     /gene="Ssxb5"
                     /inference="alignment:Splign:2.1.0"
     exon            230..319
                     /gene="Ssxb5"
                     /inference="alignment:Splign:2.1.0"
     exon            320..369
                     /gene="Ssxb5"
                     /inference="alignment:Splign:2.1.0"
     exon            370..445
                     /gene="Ssxb5"
                     /inference="alignment:Splign:2.1.0"
     exon            446..562
                     /gene="Ssxb5"
                     /inference="alignment:Splign:2.1.0"
     exon            563..602
                     /gene="Ssxb5"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 tgtgcttgac gaagacaaga ttgtgtcttt taaaatcaca gtgatataga aacagtgagt
       61 tcctgtgaaa aggtccccat ggaagtgctt tatgaaccaa agaataactg caaggccttc
      121 caggatattt ctacatactt ctctgatgaa gagtggggaa agctgactca atggcagaaa
      181 agtgcctacg tgtacatgaa aagaaactac atcagaatga ctgacctagg ggtcaacgtg
      241 aaccaaccag ttttcatgcg tggcaaggag caggccaagc aattcctggt tgaaggcatt
      301 gaagatcatg acagtgaaga tgaatgcttt gaagaatctt ttggtgtgac accgagaaaa
      361 cgaatgaagc tgacatcagt gacaataagt attcataatg tagaaggaag ccttgcctct
      421 ggagagaatg attccaactt ggcagaaact gatggcattc aggtcaatgt ttggagccac
      481 cggctgcgag agaggaagta tcgagtgata tattcagaga ttagtgatcc tgaagaggaa
      541 gaagatgatg attactgaac tgacagttga aataagccca cggtggaaga aggatggagt
      601 gg
//
