LOCUS       NM_198898                824 bp    mRNA    linear   ROD 07-AUG-2023
DEFINITION  Mus musculus SSX member B3 (Ssxb3), mRNA.
ACCESSION   NM_198898 XM_006527631 XM_203296
VERSION     NM_198898.3
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 824)
  AUTHORS   Chen YT, Alpen B, Ono T, Gure AO, Scanlan MA, Biggs WH 3rd, Arden
            K, Nakayama E and Old LJ.
  TITLE     Identification and characterization of mouse SSX genes: a multigene
            family on the X chromosome with restricted cancer/testis expression
  JOURNAL   Genomics 82 (6), 628-636 (2003)
   PUBMED   14611804
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            BX890578.6.
            
            On or before Oct 19, 2017 this sequence version replaced
            XM_006527631.1, NM_198898.2.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC087939.1, CA464456.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849384 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-68                BX890578.6         95994-96061         c
            69-195              BX890578.6         93377-93503         c
            196-310             BX890578.6         92810-92924         c
            311-400             BX890578.6         92421-92510         c
            401-450             BX890578.6         91895-91944         c
            451-526             BX890578.6         91206-91281         c
            527-643             BX890578.6         88234-88350         c
            644-824             BX890578.6         87649-87829         c
FEATURES             Location/Qualifiers
     source          1..824
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="X"
                     /map="X 3.89 cM"
     gene            1..824
                     /gene="Ssxb3"
                     /note="SSX member B3"
                     /db_xref="GeneID:278174"
                     /db_xref="MGI:MGI:2446772"
     exon            1..68
                     /gene="Ssxb3"
                     /inference="alignment:Splign:2.1.0"
     exon            69..195
                     /gene="Ssxb3"
                     /inference="alignment:Splign:2.1.0"
     CDS             127..639
                     /gene="Ssxb3"
                     /note="synovial sarcoma, X member B, breakpoint 3"
                     /codon_start=1
                     /product="synovial sarcoma, X member B3"
                     /protein_id="NP_942601.1"
                     /db_xref="CCDS:CCDS29999.1"
                     /db_xref="GeneID:278174"
                     /db_xref="MGI:MGI:2446772"
                     /translation="METVSSCEKIPMEVLYEPKNICKAFQDISTYFSDEEWGKLTQWQ
                     KSAYMYMKRNYIRMTDLGVTVNQPVFMRGKEQEKQSLVEGIEVHDSDDECFEGSFDVT
                     PRKRMKLTSVTISIHNVEGSLASGKNDSNLAETDGIQVNVWSHRLRERKYRVIYSEIS
                     DPEEEEDDDY"
     exon            196..310
                     /gene="Ssxb3"
                     /inference="alignment:Splign:2.1.0"
     exon            311..400
                     /gene="Ssxb3"
                     /inference="alignment:Splign:2.1.0"
     exon            401..450
                     /gene="Ssxb3"
                     /inference="alignment:Splign:2.1.0"
     exon            451..526
                     /gene="Ssxb3"
                     /inference="alignment:Splign:2.1.0"
     exon            527..643
                     /gene="Ssxb3"
                     /inference="alignment:Splign:2.1.0"
     exon            644..824
                     /gene="Ssxb3"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 agtttcctga ggaattcaaa gggtttggct gccctggttg ctgagtctct agcaacagct
       61 gaatcaagga catttggttt tgtgcttgaa gaagacaaga ttgtgtcttt tcaaaatcac
      121 actgacatgg aaacagtgag ttcctgtgaa aagatcccca tggaagtgct ttatgaacca
      181 aagaatatct gcaaggcctt ccaggatatt tctacatact tctctgatga agagtgggga
      241 aagctgactc aatggcagaa aagtgcctac atgtacatga aaagaaacta catcagaatg
      301 actgacctag gggtcaccgt gaaccaacca gttttcatgc gtggcaagga gcaggaaaag
      361 caatccctgg ttgaaggcat tgaagttcat gacagtgatg atgaatgctt tgaaggatct
      421 tttgatgtga caccgagaaa acgaatgaag ctgacgtcag tgacaataag tattcataat
      481 gtagaaggaa gccttgcctc tggaaagaat gattccaact tggcagaaac tgatggcatt
      541 caggtcaatg tttggagcca ccggctgcga gagaggaagt atcgagtgat atattcagag
      601 attagtgatc ctgaagagga agaagatgat gattactaaa ctgacagttg aaataaggcc
      661 acggtggaag aaggatggag tggcgattca acatcacagc tccacctttg aaagactaaa
      721 tatcagcagt atagatgcat acatttattt atatatttat tgattatata catttatacc
      781 tatatttatt tatttataaa agtctactag aattctgagt taaa
//
