LOCUS       NM_026492                879 bp    mRNA    linear   ROD 08-AUG-2023
DEFINITION  Mus musculus SSX member B1 (Ssxb1), mRNA.
ACCESSION   NM_026492 XM_906688 XM_919982 XM_919992
VERSION     NM_026492.4
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 879)
  AUTHORS   Chen YT, Alpen B, Ono T, Gure AO, Scanlan MA, Biggs WH 3rd, Arden
            K, Nakayama E and Old LJ.
  TITLE     Identification and characterization of mouse SSX genes: a multigene
            family on the X chromosome with restricted cancer/testis expression
  JOURNAL   Genomics 82 (6), 628-636 (2003)
   PUBMED   14611804
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            BX890632.7.
            
            On Mar 18, 2023 this sequence version replaced NM_026492.3.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK006218.1, AY244792.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849384 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-123               BX890632.7         109599-109721
            124-250             BX890632.7         112166-112292
            251-365             BX890632.7         112748-112862
            366-455             BX890632.7         113166-113255
            456-505             BX890632.7         113731-113780
            506-581             BX890632.7         114386-114461
            582-698             BX890632.7         117755-117871
            699-879             BX890632.7         118275-118455
FEATURES             Location/Qualifiers
     source          1..879
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="X"
                     /map="X 3.81 cM"
     gene            1..879
                     /gene="Ssxb1"
                     /gene_synonym="4930414C09Rik"
                     /note="SSX member B1"
                     /db_xref="GeneID:67985"
                     /db_xref="MGI:MGI:1915235"
     exon            1..123
                     /gene="Ssxb1"
                     /gene_synonym="4930414C09Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            124..250
                     /gene="Ssxb1"
                     /gene_synonym="4930414C09Rik"
                     /inference="alignment:Splign:2.1.0"
     CDS             182..694
                     /gene="Ssxb1"
                     /gene_synonym="4930414C09Rik"
                     /note="synovial sarcoma, X member B, breakpoint 1"
                     /codon_start=1
                     /product="synovial sarcoma, X member B1"
                     /protein_id="NP_080768.1"
                     /db_xref="CCDS:CCDS29997.1"
                     /db_xref="GeneID:67985"
                     /db_xref="MGI:MGI:1915235"
                     /translation="METVSSCEKVPMEVLYEPKNICKAFQDISTYFSDEEWGKLTQWQ
                     KSAYVYMKRNYIRMTDLGVTVNQPVFMRGKEQAKQSLVEGIEVHDSEDECFEGSFGVT
                     PIKRMKLTSVTISFHNVEGSLASGENDCNLAETGGIQVNVWSHRLRERKYRVIYSEIS
                     DTEEEEDDDY"
     exon            251..365
                     /gene="Ssxb1"
                     /gene_synonym="4930414C09Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            366..455
                     /gene="Ssxb1"
                     /gene_synonym="4930414C09Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            456..505
                     /gene="Ssxb1"
                     /gene_synonym="4930414C09Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            506..581
                     /gene="Ssxb1"
                     /gene_synonym="4930414C09Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            582..698
                     /gene="Ssxb1"
                     /gene_synonym="4930414C09Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            699..879
                     /gene="Ssxb1"
                     /gene_synonym="4930414C09Rik"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 agttacctga ggaattcaaa gggtttggct gccctggttg ctgagtctct agcaacagct
       61 gaatcaaggt gcatatttgg gtctcttctt ggataaacac tcctttgtcc cttcctgtct
      121 gagggcattt ggttttgtgc ttgaagaaga caagattgtg tcttttcaaa atcacactga
      181 catggaaaca gtgagttcct gtgaaaaggt ccccatggaa gtgctttatg aaccaaagaa
      241 tatctgcaag gcattccagg atatttctac atacttctct gatgaagagt ggggaaagct
      301 gactcaatgg cagaaaagtg cctacgtgta catgaaaaga aactacatca gaatgactga
      361 cctaggggtc accgtgaacc aaccagtttt catgcgcggc aaggagcagg ccaagcaatc
      421 cctggtcgaa ggcattgaag ttcatgacag tgaagatgaa tgctttgaag gatcttttgg
      481 tgtgacaccg ataaaacgaa tgaagctgac atcagtgaca ataagttttc ataatgtaga
      541 aggaagcctt gcatctggag agaatgattg caacttggca gaaactggtg gcattcaggt
      601 caatgtttgg agccaccggc tgcgagagag gaagtatcga gtgatatatt cagagattag
      661 tgatactgaa gaggaagaag atgatgatta ctgaactgac agtctaaatg agcccacagt
      721 ggaagaagga tggagtggcg actcaacatc acagctacag ctttgaaaga ctaaatatca
      781 gcactataga tacatacatt tatttatata tttattgatg atatacactt atacctatat
      841 tcatttattt ataaaagtct actggaattc tgagttaaa
//
