LOCUS       NM_001205086             493 bp    mRNA    linear   ROD 06-FEB-2024
DEFINITION  Mus musculus SSX member A1 (Ssxa1), mRNA.
ACCESSION   NM_001205086
VERSION     NM_001205086.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 493)
  AUTHORS   Ichinokawa,M., Miyamoto,M., Tanaka,K., Kyogoku,N., Kuroda,A.,
            Maki,T., Yamamura,Y. and Hirano,S.
  TITLE     Sequence confirmation and characterization of the mouse Ssxa gene:
            Ssxa protein is cleaved and the N-terminal cleaved fragment
            translocates into the nucleus
  JOURNAL   Int J Mol Med 28 (5), 705-710 (2011)
   PUBMED   21725589
  REMARK    GeneRIF: Data conclude that the N-terminal cleaved fragment of
            Ssxa, which has a KRAB domain (nuclear localization signal),
            translocates into the nucleus after cleavage of the C-terminus.
REFERENCE   2  (bases 1 to 493)
  AUTHORS   Chen,Y.T., Alpen,B., Ono,T., Gure,A.O., Scanlan,M.A., Biggs,W.H.
            3rd, Arden,K., Nakayama,E. and Old,L.J.
  TITLE     Identification and characterization of mouse SSX genes: a multigene
            family on the X chromosome with restricted cancer/testis expression
  JOURNAL   Genomics 82 (6), 628-636 (2003)
   PUBMED   14611804
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from AB618486.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AB618486.1 [ECO:0000332]
            RNAseq introns              :: partial sample support SAMN00849384
                                           [ECO:0000350]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..493
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="BALB/c"
                     /db_xref="taxon:10090"
                     /chromosome="X"
                     /map="X 16.61 cM"
     gene            1..493
                     /gene="Ssxa1"
                     /gene_synonym="Gm1532; Ssxa"
                     /note="SSX member A1"
                     /db_xref="GeneID:385338"
                     /db_xref="MGI:MGI:2446782"
     CDS             1..306
                     /gene="Ssxa1"
                     /gene_synonym="Gm1532; Ssxa"
                     /note="synovial sarcoma, X member A, breakpoint 1;
                     synovial sarcoma, X member A1"
                     /codon_start=1
                     /product="protein SSXA1"
                     /protein_id="NP_001192015.1"
                     /db_xref="GeneID:385338"
                     /db_xref="MGI:MGI:2446782"
                     /translation="MKRRSHSVNLGKTKHKPEETCQAFEDISKYFSKEEWKKLSRSEK
                     ITYVYMKRNYTTMTNLGLRAHLPDFMESKERVTKSVLSDSDEVSSHESQDKRKNPVV"
     exon            1..66
                     /gene="Ssxa1"
                     /gene_synonym="Gm1532; Ssxa"
                     /inference="alignment:Splign:2.1.0"
     exon            67..181
                     /gene="Ssxa1"
                     /gene_synonym="Gm1532; Ssxa"
                     /inference="alignment:Splign:2.1.0"
     exon            182..280
                     /gene="Ssxa1"
                     /gene_synonym="Gm1532; Ssxa"
                     /inference="alignment:Splign:2.1.0"
     exon            281..493
                     /gene="Ssxa1"
                     /gene_synonym="Gm1532; Ssxa"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 atgaagagaa ggtctcattc agtgaacctc ggaaaaacta agcacaagcc agaggagaca
       61 tgccaggcct tcgaggatat ctctaaatac ttctctaagg aagagtggaa aaagctgagc
      121 cgttcagaga agatcacata tgtgtatatg aaaagaaact acaccaccat gactaatcta
      181 ggcctcagag cccatctccc agatttcatg gaatctaagg aacgggtcac aaaatctgtg
      241 ctcagtgatt ctgatgaagt ttccagccac gagagtcaag ataagaggaa gaatcccgtg
      301 gtgtgaagaa gatcatcata ggcctcaaga ttatgggcac aattctaaaa tcctaagcat
      361 cagaaagaaa aattctcagc acagaaagtt aagcatcatt gtaccttcta agtgctaagg
      421 actgtctttg tactgagttt ttactctata tgcactgttc ttggcgtgtc catgtacttc
      481 tcttaacatt gct
//
