LOCUS       NM_001166480             826 bp    mRNA    linear   ROD 14-NOV-2023
DEFINITION  Mus musculus signal sequence receptor, delta (Ssr4), transcript
            variant 1, mRNA.
ACCESSION   NM_001166480
VERSION     NM_001166480.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 826)
  AUTHORS   Piao Y, Ko NT, Lim MK and Ko MS.
  TITLE     Construction of long-transcript enriched cDNA libraries from
            submicrogram amounts of total RNAs by a universal PCR amplification
            method
  JOURNAL   Genome Res 11 (9), 1553-1558 (2001)
   PUBMED   11544199
REFERENCE   2  (bases 1 to 826)
  AUTHORS   Brenner V, Nyakatura G, Rosenthal A and Platzer M.
  TITLE     Genomic organization of two novel genes on human Xq28: compact head
            to head arrangement of IDH gamma and TRAP delta is conserved in rat
            and mouse
  JOURNAL   Genomics 44 (1), 8-14 (1997)
   PUBMED   9286695
REFERENCE   3  (bases 1 to 826)
  AUTHORS   Holthuis JC, van Riel MC and Martens GJ.
  TITLE     Translocon-associated protein TRAP delta and a novel TRAP-like
            protein are coordinately expressed with pro-opiomelanocortin in
            Xenopus intermediate pituitary
  JOURNAL   Biochem J 312 (Pt 1) (Pt 1), 205-213 (1995)
   PUBMED   7492314
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AL672094.11, BI989805.1, AK007921.1 and BQ747160.1.
            
            [WARNING] On Dec 1, 2023 this sequence was replaced by
            NM_001166480.3.
            
            On Nov 23, 2017 this sequence version replaced NM_001166480.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BQ747160.1, BQ747183.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374, SAMN00849375
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-5                 AL672094.11        50502-50506
            6-168               BI989805.1         1-163
            169-805             AK007921.1         2-638
            806-826             BQ747160.1         586-606
FEATURES             Location/Qualifiers
     source          1..826
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="X"
                     /map="X 37.41 cM"
     gene            1..826
                     /gene="Ssr4"
                     /gene_synonym="SSR-delta; Trap; TRAP-delta"
                     /note="signal sequence receptor, delta"
                     /db_xref="GeneID:20832"
                     /db_xref="MGI:MGI:1099464"
     exon            1..284
                     /gene="Ssr4"
                     /gene_synonym="SSR-delta; Trap; TRAP-delta"
                     /inference="alignment:Splign:2.1.0"
     CDS             218..739
                     /gene="Ssr4"
                     /gene_synonym="SSR-delta; Trap; TRAP-delta"
                     /note="isoform 1 precursor is encoded by transcript
                     variant 1; translocon-associated protein subunit delta;
                     signal sequence receptor subunit delta"
                     /codon_start=1
                     /product="translocon-associated protein subunit delta
                     isoform 1 precursor"
                     /protein_id="NP_001159952.1"
                     /db_xref="CCDS:CCDS53099.1"
                     /db_xref="GeneID:20832"
                     /db_xref="MGI:MGI:1099464"
                     /translation="MAAMASFGALALLLLSGLSCCSAEACLEPQITPSYYTTSDAVIS
                     TETVFIVEISLTCKNRVQNMALYADVSGKQFPVTRGQDVGRYQVSWSLEHKSAHAGTY
                     EVRFFDEESYSLLRKAQRNNEDVSIIPPLFTVSVDHRGTWNGPWVSTEVLAAVIGIVI
                     YYLAFSAKSHIQA"
     exon            285..403
                     /gene="Ssr4"
                     /gene_synonym="SSR-delta; Trap; TRAP-delta"
                     /inference="alignment:Splign:2.1.0"
     exon            404..478
                     /gene="Ssr4"
                     /gene_synonym="SSR-delta; Trap; TRAP-delta"
                     /inference="alignment:Splign:2.1.0"
     exon            479..568
                     /gene="Ssr4"
                     /gene_synonym="SSR-delta; Trap; TRAP-delta"
                     /inference="alignment:Splign:2.1.0"
     exon            569..634
                     /gene="Ssr4"
                     /gene_synonym="SSR-delta; Trap; TRAP-delta"
                     /inference="alignment:Splign:2.1.0"
     exon            635..809
                     /gene="Ssr4"
                     /gene_synonym="SSR-delta; Trap; TRAP-delta"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 atcttgggga ggggaaggct gagaaggagg gaagtgcgac cggttgggac cctggctagg
       61 gaagcggaca cgtcagtgcc gccagcgacg tcaccatgcc cgacccagcc cgccgacgca
      121 cgattgggtg ctgaggccgc ttacgcgtcg cgcttcctcg tctgctccgc atgtccaggg
      181 tggcttgctc tcttttcccc tcggaagaga agaggcgatg gcggcgatgg catctttcgg
      241 cgccctggca ctactcctgc tgtctggcct atcttgctgc tcagcagagg cctgcctgga
      301 accacagatc accccttctt actatacaac ttcagatgcc gtcatttcta cagagactgt
      361 attcatcgtg gagatttcac tgacctgcaa gaacagggtc cagaacatgg ctctttatgc
      421 cgacgttagt ggaaaacaat ttcctgtaac ccgcggccag gatgtgggtc gatatcaggt
      481 gtcctggagc ctggagcaca agagcgctca tgcgggcacc tatgaggtca gattctttga
      541 tgaagagtcc tatagcctcc taaggaaggc tcagagaaat aatgaggacg tttctatcat
      601 tccacccctg ttcacagtca gtgtggacca tcggggtacc tggaatgggc cttgggtctc
      661 cacagaggtg ctggctgcag taattggcat agtgatctac tacctagctt tcagtgcaaa
      721 gagccacatc caggcctgag ggcagcaact tcagccgtcc attgcttctt tcaataaaca
      781 gtcactattt gacatgagta cattcaagaa aaaaaaaaaa aaaaaa
//
