LOCUS       NM_026155               2885 bp    mRNA    linear   ROD 02-JUN-2024
DEFINITION  Mus musculus signal sequence receptor, gamma (Ssr3), mRNA.
ACCESSION   NM_026155
VERSION     NM_026155.3
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 2885)
  AUTHORS   Yamaguchi,Y.L., Tanaka,S.S., Oshima,N., Kiyonari,H., Asashima,M.
            and Nishinakamura,R.
  TITLE     Translocon-associated protein subunit Trap-gamma/Ssr3 is required
            for vascular network formation in the mouse placenta
  JOURNAL   Dev Dyn 240 (2), 394-403 (2011)
   PUBMED   21246656
  REMARK    GeneRIF: Results suggest that Trap-gamma appears to be required for
            vascular network formation in murine placental development.
REFERENCE   2  (bases 1 to 2885)
  AUTHORS   Breunig,J.J., Sarkisian,M.R., Arellano,J.I., Morozov,Y.M.,
            Ayoub,A.E., Sojitra,S., Wang,B., Flavell,R.A., Rakic,P. and Town,T.
  TITLE     Primary cilia regulate hippocampal neurogenesis by mediating sonic
            hedgehog signaling
  JOURNAL   Proc Natl Acad Sci U S A 105 (35), 13127-13132 (2008)
   PUBMED   18728187
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from AC113279.7.
            
            On Apr 29, 2007 this sequence version replaced NM_026155.2.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK002818.1, BC011111.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849381, SAMN00849386
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-149               AC113279.7         21755-21903         c
            150-276             AC113279.7         20675-20801         c
            277-375             AC113279.7         17082-17180         c
            376-507             AC113279.7         12342-12473         c
            508-2885            AC113279.7         9007-11384          c
FEATURES             Location/Qualifiers
     source          1..2885
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="3"
                     /map="3 30.15 cM"
     gene            1..2885
                     /gene="Ssr3"
                     /gene_synonym="0610038P07Rik; TRAPG"
                     /note="signal sequence receptor, gamma"
                     /db_xref="GeneID:67437"
                     /db_xref="MGI:MGI:1914687"
     exon            1..149
                     /gene="Ssr3"
                     /gene_synonym="0610038P07Rik; TRAPG"
                     /inference="alignment:Splign:2.1.0"
     CDS             17..574
                     /gene="Ssr3"
                     /gene_synonym="0610038P07Rik; TRAPG"
                     /note="SSR-gamma; TRAP-gamma; signal sequence receptor
                     subunit gamma; translocon-associated protein gamma"
                     /codon_start=1
                     /product="translocon-associated protein subunit gamma"
                     /protein_id="NP_080431.1"
                     /db_xref="CCDS:CCDS17386.1"
                     /db_xref="GeneID:67437"
                     /db_xref="MGI:MGI:1914687"
                     /translation="MAPKGGSKQQSEEDLLLQDFSRNLSAKSSALFFGNAFIVSAIPI
                     WLYWRIWHMDLIQSAVLYSVMTLVSTYLVAFAYKNVKFVLKHKVAQKREDAVSKEVTR
                     KLSEADNRKMSRKEKDERILWKKNEVADYEATTFSIFYNNTLFLVLVIVASFFILKNF
                     NPTVNYILSISASSGLIALLSTGSK"
     exon            150..276
                     /gene="Ssr3"
                     /gene_synonym="0610038P07Rik; TRAPG"
                     /inference="alignment:Splign:2.1.0"
     exon            277..375
                     /gene="Ssr3"
                     /gene_synonym="0610038P07Rik; TRAPG"
                     /inference="alignment:Splign:2.1.0"
     exon            376..507
                     /gene="Ssr3"
                     /gene_synonym="0610038P07Rik; TRAPG"
                     /inference="alignment:Splign:2.1.0"
     exon            508..2885
                     /gene="Ssr3"
                     /gene_synonym="0610038P07Rik; TRAPG"
                     /inference="alignment:Splign:2.1.0"
     regulatory      761..766
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Ssr3"
                     /gene_synonym="0610038P07Rik; TRAPG"
                     /note="hexamer: AATGAA"
     polyA_site      778
                     /gene="Ssr3"
                     /gene_synonym="0610038P07Rik; TRAPG"
     regulatory      2863..2868
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Ssr3"
                     /gene_synonym="0610038P07Rik; TRAPG"
                     /note="hexamer: ATTAAA"
     polyA_site      2885
                     /gene="Ssr3"
                     /gene_synonym="0610038P07Rik; TRAPG"
                     /note="major polyA site"
ORIGIN      
        1 agtcttcagc tcggccatgg ctcccaaagg cggctccaag cagcagtccg aggaggacct
       61 gctccttcag gatttcagcc gcaacctgtc ggccaaatcg tcggcgctgt tcttcgggaa
      121 cgcgttcatc gtgtctgcca tccccatctg gttgtattgg agaatatggc atatggatct
      181 catccagtct gctgtgctct acagtgtgat gaccttagta agcacttact tagtagcctt
      241 cgcgtacaag aatgtaaaat ttgttctgaa gcacaaagtg gcacagaaga gggaggatgc
      301 tgtttccaaa gaagtgactc gaaagctttc tgaagctgat aataggaaga tgtcccggaa
      361 ggagaaagac gaaagaatcc tgtggaagaa gaatgaagtt gctgattatg aagctacaac
      421 attctccatc ttctataaca acactctgtt cctggttctg gttattgttg cttccttctt
      481 tatactgaag aacttcaacc ccacagtaaa ctacattttg tccataagtg cttcatctgg
      541 actcatcgcc ctcttgtcta ctggctccaa atagaccatg tagcttggcc ctctgccttt
      601 gtatctcggg gtggcctgtg gtatatggga aagcatcagg gtggccaggt tgggagacac
      661 ataagttgtt tttatagtct ggagcttcag ggtttaaaaa tgcagtagaa tgtaattcag
      721 tgtttgttta ttggctgttt ttgacagatt gctgaaatta aatgaattga aagggaaact
      781 cagagtacca gggcatttta ttaaaaggca aggagtcttg caatgtgctg taatcacgag
      841 gagaaaataa cttgtttcct acatctgtca gaggtcatgg taacctggac tgagctgtta
      901 ttatttataa taggaggaag aagttaataa ctggttctct gtgttccaag cacaatatta
      961 caacttttcg aactgtaaat cttagagtga atcctcttcc taaggaatta aacagaagcc
     1021 tcattttctt tttaacaagg cttcaaattt gtaatttata ataactcaaa gttaattgta
     1081 aattacaggg cctctccaat ttgagggagg gaaacttgca gaatcttttt tttttttttt
     1141 ttaaaagaaa ggcagccaag gtagttacct aaaaatagta cccaggccta tgagtgttgg
     1201 cctgtgaggc caaagcacac actgttcagc tgtatggctt tggccctggg tggccgggag
     1261 gtcagcttga ccctgccatg ttggtttgat gtgcgaagtc actgggatca ttgtgtctat
     1321 gaccaggctt tcgcaccaca ggcagaatat taagtgagag agtatttcta ctgtgattat
     1381 tgacacatga gagaccaaaa gaatttttgt gaacgtaacc ctggaattct ttgggctctc
     1441 caaagaattt acagtggttt aaaatggttg tcagcatttt tccatgagga ctttaataaa
     1501 cttagccccg tttgctcaag gttcctttta attgtgaagt gctgatcaca tacatttttg
     1561 ggggggtcta gcaaagagta gcctcatgtt gtgtggtcat aacccccacc cccccatgtc
     1621 ttttccccac tcattatgta cagattctga ttttgtatgc aatgacttca cagtttgcaa
     1681 agtgcagcac tatgatcact gatttcatat tcctatttgc cgttcaccac acccaagaac
     1741 tttctgtaaa gggaaatatt actaatatct agtttctgct tgtaaactta agaggaacat
     1801 atgactctat ttttaacttt aaagatattt acaaggagta gagctgtttc tgtgctggta
     1861 gatgtttctg tggtctgtgc tacttaggga actcaagagg agtgcacttg tatagtcatg
     1921 ttactcctta ctgtctgcct ggagaatcat tttatctcca agtgttcagt tcttttcagt
     1981 gatacattgt tacctgagtg tcatttccag gtaatgtgga atgaatgggg aaatgagaag
     2041 ggattcaaag caaagtacat ttcagtaaca catatgaggt aggctgtttt gttgttttat
     2101 tttaatcagt atttggctgg taaaatgata atttgataaa ccatcatgtt accaaagcta
     2161 aaccaaactc cttctaagtg actgctgtga acttgccact aggtggcggt gcctgtgtag
     2221 ctggggagaa agtcaccacc tttatcttta tctgacagta tggtcagaag ctcaagaaat
     2281 cgggatgtca gcctcaaatt tttaatttta agtagtaacc aaaagtttgt tgggagagtg
     2341 attatgcagt tttcttctgt cttgactgtt tcctgcgact gtctttgttt ttaactctga
     2401 acatgttctc taactctgtg ctaccacatt tctgtgtgtg aagtcatgca gccagtgtat
     2461 cagccctttg tacttagaag tgtggcccct cctctctagc ctcttctcca ccattgaaca
     2521 ttgcacatag gattacgaag tgttcagtaa gacagtgaaa tctgtggcag gcagagtttg
     2581 taccataaaa agaccccata catcacacca gtaaaatagg acattcagag tgctcacatt
     2641 ctttcctttc tcatatgtgt gataggtaga ctcttagtgt taagaatttt tatttcacga
     2701 tttactcatt tataacttaa tagaagtctt ggattaaata tacaacttgt actgtttgat
     2761 atattgtttt aatttggaaa ggataatttg aagttaactg aaatgatgga agtggaattt
     2821 atactctgca ttttaaaaaa agtcttgtta ttaataagta tgattaaact ttgtttttaa
     2881 aaatg
//
