LOCUS       XM_011248193            8459 bp    mRNA    linear   ROD 07-FEB-2024
DEFINITION  PREDICTED: Mus musculus slingshot protein phosphatase 1 (Ssh1),
            transcript variant X1, mRNA.
ACCESSION   XM_011248193
VERSION     XM_011248193.4
DBLINK      BioProject: PRJNA169
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000071.7) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Sep 21, 2020 this sequence version replaced XM_011248193.3.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001635.27-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/01/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8459
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6J"
                     /db_xref="taxon:10090"
                     /chromosome="5"
     gene            1..8459
                     /gene="Ssh1"
                     /gene_synonym="Gm1394; Gm1395; SSH-1; SSH-1L"
                     /note="slingshot protein phosphatase 1; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 7 mRNAs, 9 ESTs, 789 long SRA reads, 1 Protein, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 4 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:231637"
                     /db_xref="MGI:MGI:2686240"
     CDS             96..3317
                     /gene="Ssh1"
                     /gene_synonym="Gm1394; Gm1395; SSH-1; SSH-1L"
                     /codon_start=1
                     /product="protein phosphatase Slingshot homolog 1 isoform
                     X1"
                     /protein_id="XP_011246495.1"
                     /db_xref="GeneID:231637"
                     /db_xref="MGI:MGI:2686240"
                     /translation="MMILVLLAPDLLCIEGVTLNSDHLVSLTRLSARITAVVCITTPG
                     LWRARDLHDCSTSILPTELHPGLCLSESFFMVKGAALFLQQGNSPQGQRSLQHPHKHA
                     GDLPQHLQVMINLLRCEDRIKLAVRLESVWTDRVRYMVVVYTSGRQDTEENILLGVDF
                     SSKESKSCTIGMVLRLWSDTKIHLDGDGGFSVSTAGRMHIFKPVSVQAMWSALQVLHK
                     ACEVARRHNYFPGGVALIWATYYESCISSEQSCINEWNAMQDLESTRPDSPALFVDKP
                     TEGERTERLIKAKLRSIMMSQDLENVTSKEIRNELEKQMNCNLKEFKEFIDNEMLLIL
                     GQMDKPSLIFDHLYLGSEWNASNLEELQGSGVDYILNVTREIDNFFPGLFAYHNIRVY
                     DEETTDLLAHWNEAYHFINKAKRNHSKCLVHCKMGVSRSASTVIAYAMKEFGWPLEKA
                     YNYVKQKRSITRPNAGFMRQLSEYEGILDASKQRHNKLWRQQPTDDTIAEPSEFLPET
                     LDGALDAQLPCLDDTTHPGLPRSLAPGGPALPCCFRRLSDPLLLPHHDETGGLVHLED
                     LEKDALLEEEESQPVEVHKLVQHPQEGARLCEKDVKRKLEFGNSKPRSDSLPQVEELE
                     KDGSPRTGRWRRASTQLDRSLLDQENLNNNNSKRSCPDDLERDAMFGILSKVKPPYTS
                     CADCMYPTAGGTPEAYMERHEDPSSSAICTQPTFLPHVTSSPMAHASSRSRAPERPAS
                     GPANTSPFLLPAGSRKPDVSGSGAGAAPEPPASLLEPSRETSKALPKSLQLKNPHCDK
                     NAANMEVSAKEEPSPKKDPKPAKDLRLLFSNEAEKPTTNSYLMQHQESIIQLQKAGLV
                     RKHTKELERLKSLPSDSPAACRDSATCRLEASIPEEGSQEPAHPALCSQAGSEEQPVG
                     GTLQKSPTSTLPRLDHTSNFSKDFLKTVCYTPTSSSISSNLTRSSSSDSIHSVRGKPG
                     LVKQRAQEIETRLRLAGLTVSSPLKRSHSLAKLGSLNFSTEDLSSEADTSTIADSQDA
                     KCGLSSSFLPEPQSAPRDPAATSKSSGKSAPEHLKSPSRVNKS"
ORIGIN      
        1 cttatttacc actaagcata tcctggggaa gatacttcga gattatgtta acatccggac
       61 gtatctaggt actgtccaat ttagttggtt tgttaatgat gatccttgtt ttgctggctc
      121 cagacttgct gtgtattgaa ggggtgacct tgaactctga tcacctggtt tccctcaccc
      181 gactgagtgc caggattaca gctgtggtgt gcatcaccac acctggcttg tggcgggcca
      241 gagaccttca tgattgctca acaagcatcc taccaaccga gctacatccc ggcctctgct
      301 tgagtgagag ctttttcatg gtgaaaggag ctgccctctt cctacagcag ggaaacagcc
      361 cacagggcca gcggagtctt cagcaccctc acaagcatgc aggtgatctg cctcagcacc
      421 tgcaagtgat gatcaacctc ctgcgttgtg aagacagaat caagctggcc gtgcgcctag
      481 agagtgtctg gaccgaccgt gtccgctaca tggtcgtggt atacaccagc gggcgccagg
      541 acaccgagga gaatattctg ctgggagttg acttttccag taaggagagc aaaagctgca
      601 cgatcggaat ggttcttcga ctctggagcg acaccaagat tcacctcgat ggggacggcg
      661 ggttcagtgt gagcacagcg ggcaggatgc acatattcaa gccagtgtct gtccaggcca
      721 tgtggtctgc cctgcaagtg cttcacaagg cctgcgaagt ggcccggagg cataactact
      781 tcccaggagg agtggcgctc atctgggcca cctactatga gagctgcatc agctcggagc
      841 agagctgcat caatgagtgg aatgccatgc aggacctgga gtccacgcgg cccgactccc
      901 ccgcgctgtt tgtggacaag ccaaccgagg gcgaaagaac tgagcgcctc attaaagcca
      961 aactccggag catcatgatg agccaggacc ttgaaaatgt gacttctaag gaaatccgaa
     1021 atgagctgga gaagcaaatg aactgcaacc tgaaggagtt caaggaattc atcgataacg
     1081 agatgctgct catcctgggc cagatggaca agccctccct catctttgac catctttatc
     1141 ttggctccga gtggaatgca tccaatctgg aggagctgca gggctcagga gttgactaca
     1201 ttttaaatgt cactagagaa atagacaatt ttttccccgg cttgtttgcg taccataaca
     1261 tccgcgtgta cgatgaggag accacagacc ttcttgccca ctggaatgaa gcttatcatt
     1321 tcataaacaa agcgaaaagg aatcattcca agtgcctggt ccattgcaag atgggcgtca
     1381 gccgatctgc gtccacagtc attgcctacg ccatgaagga gttcggctgg cccctggaga
     1441 aagcgtataa ctacgtgaag cagaaacgta gtatcactcg gcccaacgca ggctttatga
     1501 ggcagctgtc tgagtacgaa ggcatcctgg atgcaagcaa acagcggcat aacaaactat
     1561 ggcgccagca gcccacagat gacaccatcg cagagcccag tgagttcttg ccagagacct
     1621 tggacggagc cctggacgct cagctgccct gtttggatga taccacccac cctgggctcc
     1681 cgagaagtct ggccccagga ggacccgctc tcccctgttg ttttcgaaga ctctcggacc
     1741 ccctcctcct tccccaccat gatgaaacgg gtggcctggt ccacttagag gatctcgaga
     1801 aggatgctct gttagaggag gaggagtctc agccagtgga ggtgcacaag ctggttcagc
     1861 atccccagga aggtgccagg ctgtgtgaaa aggacgtaaa gaggaaactg gagtttggga
     1921 actccaaacc ccgcagtgac tccttgcctc aggtggagga gctggagaag gacggtagcc
     1981 caagaacggg gaggtggagg cgggcctcca cccagctcga tagaagcttg ctcgaccagg
     2041 aaaacctaaa taacaacaac agcaagagga gctgtcccga tgacttggag cgcgatgcca
     2101 tgtttggaat tctcagcaaa gtgaagcctc cctacacatc ctgtgccgac tgcatgtacc
     2161 ccacagctgg tgggactccc gaggcctaca tggagcgaca cgaagacccc agctcctctg
     2221 ctatctgcac ccagccaacc ttcctccccc atgtcacgtc ttccccaatg gcccacgcga
     2281 gcagcaggtc ccgagctccg gagaggccgg cctcgggtcc agccaacacc tctccattcc
     2341 tactaccagc aggctccagg aagccagatg tcagtggctc tggagccggg gctgccccgg
     2401 aaccaccagc aagccttcta gagccttcca gagagacctc aaaagccctt ccaaaatctc
     2461 tccagttgaa gaatcctcac tgtgacaaga acgctgccaa tatggaggtg tcggcgaagg
     2521 aagaaccgtc gcctaagaaa gatcccaagc cggctaagga cctgaggctt ctgttcagta
     2581 acgaggcgga gaagcccacc accaacagct acctgatgca gcatcaggag tccatcatcc
     2641 aactgcagaa ggcaggcctg gtccgaaagc acaccaaaga gctggagagg ttgaagagcc
     2701 tgccttcaga ctcaccagct gcctgcaggg acagcgccac ctgcaggctg gaggccagca
     2761 tcccggagga gggtagccag gagcccgcac acccagccct gtgcagccaa gctgggtcgg
     2821 aagaacagcc tgtaggggga accttgcaga agagccccac gtctaccctc ccccgtttag
     2881 atcacaccag taacttctcg aaggacttcc tgaagaccgt gtgttacacc cccacctcct
     2941 cctccatcag ctccaacctg acccggagct ccagcagcga cagcatccac agcgtccgag
     3001 ggaagcctgg gctggtgaag cagcgggcgc aggagatcga gacgcggctg cgcctggcag
     3061 gcctcaccgt gtcgtccccg ctgaaaaggt cccattccct tgccaagctg ggaagtctca
     3121 acttctccac ggaggacctg tccagcgagg ctgacacatc caccatcgct gactcgcagg
     3181 acgccaagtg tggtctctcc tcttccttct tgcccgaacc ccagtctgcg ccaagggacc
     3241 ccgctgcaac ctctaaatca tcagggaaat ctgccccaga acacttgaaa agcccgtcga
     3301 gggtaaacaa aagctgacta gctttcagct ctgtaaggtt ttcatcatgt cctgatctac
     3361 tctcatgtct tgatttgtgt taatgacttc agtcttctgg gctttcccca cttagatccc
     3421 gtgagggggg acacccgggt gtaggacctg ggcaacctgg aaactgtcag ccaagagtca
     3481 cattcagata tgtacacgca agccagggct acggcttggt tgttaagagt gtgtgcctga
     3541 catgcaccag gctctcagtt ttgatgccca gaaaccgtaa aaccaggcac ggttgcgcac
     3601 gcgtacggaa attccaacac tggaggtgca agcagaagga ttagaagtca tcttcagcta
     3661 catggtgagt tttaggccag cctggtggag agaaaaagaa aatgtgtgcg gacatacaaa
     3721 atacagtttg caacatgtca aggaaccaca ttggcgaggt cactgcagcc cacgatcccg
     3781 gctcattccc gtcctcgagg gagaatcctc agagggcaac acaaggccta cctctctgct
     3841 cactgtgcat ttttgtttat aaaacggtaa tgaccaaggc tcgttctgag aacaatgcta
     3901 tgtccagaag ggattttcca agagaattgt ggggggtttt gggtttggag ttttttttgt
     3961 tgtttttttt ttttgttttg ttttgttttt ttgagggtgg ggacccgcag aaatgtcaag
     4021 actttgaacc tgattgtccc aagaacagct aggtgatatc atcagaggaa agcacttagg
     4081 gagagtggcc ccgtctaatc ctccatcctg gtggggttgg gtcctcagct gttggcttcc
     4141 cttcaagctt atgtcaccca gtcactgaga aggcactgcg agcctcatct gctgctaacg
     4201 gaggttgtgg gcctggggtg tggatcatcc tgctgtgacc acacggtaac cctccaggat
     4261 ggctcagtag gaaccatctc cacacttgct gagaggaaag gcagcgtcag caacggatac
     4321 tttcttacaa gtccctcccc agagccagtc tgagaggaga gagtctattg aaaagctgct
     4381 ctgatgttta ccagagtccc ttcccgtgga gagaatagaa tattgcttcc ttgtctcctc
     4441 cggctccccc ttgctgtaat gatgggacaa aggaggcttg gccacagcac aggtgtgagc
     4501 acagattagc tcaatgaagc aggaggcctg ggctctgggt tcatatcatg ggcctcgact
     4561 ggtgcccatc atgaaaaggg tgcttaagga ttttttaaat tttttttttc cttaaggatt
     4621 ttgaagagag acaagcagag aggcagacca gcagaaagcc ttgacttggt atttagccaa
     4681 cgatggtgca cagccctgtg aggtcacata tccatttggg ctctgttaat gtgtttaggt
     4741 tttggttttt tgagacaggg tctcaccatg tacctccgct gtcttggaac tttctctgca
     4801 gaccaggtag gcctcggact cagcagcgat gcatctgcct ctgtctctca agggtttggt
     4861 ttgggtattt tggtttttga agtagactct caccctgtag ttcaagctgg cttcaaactc
     4921 acagcagtcc tcctgcctca gccttccaaa tgctgagatt acaggtataa tcccatcatg
     4981 cctcagactt ggttgtttac attttgaagg gtaaatggcg caggcttgtg atctacactc
     5041 aggagggtga ggcaggtcca ccatgagtta aaggccagtc tgggccacaa agtgagattc
     5101 tacctcagaa gtagtaacct tgccagagat ggtgttacct gcttcagatg tctgctgcga
     5161 gccctctcag aaagcttgct gatgccccaa ggctgcttgt aacactgcag gaagacgggg
     5221 tttctatttg aaggctgcct ttgctccttg gatatcacag accaactcct tccctcccac
     5281 actccaaact tgccagccta cccctttacc tcttgagcag atggagtcct tgtggagatg
     5341 accacagctc cttcctgcag ttggctggct cagccagaca gctcagtgag accacaaagt
     5401 cttcaaggat atgttccgga agtatgcgta tgggggtcct cccacactgg ttagaaccaa
     5461 cggagtccgg atggtttgga ggttgcagcc aggtcccttg gcacagcctg ggattcgggc
     5521 aagaaggaag aagagagacc gccatcctgg tgaacgctct gggtgtctcc aggatctggg
     5581 ccagttctct cttcattcgt ctggggtctt tgtgacctct gtctcagaac atttctccct
     5641 ggcatgattt ttttttttta aatacatgta tgttatttta tagggattta ttttcccact
     5701 actgtcaata ccagtcacct taaaaagcga tcatccactt attcctgaaa ccctgtgggt
     5761 ttcttccact cttccctcag ccaacaaaag caaaaaaaaa aaaaaaaaaa aaaaaaaaag
     5821 gccaagttta atgacatcgc caagttcaat ttcacatggt gggtcaattt ctgtgtcaaa
     5881 ataattcctt agatttggta atgataggct tccactgtgt ttcttaatcc catctgcaag
     5941 agcgatagga tttttgaaaa ctttcatttt gaaagagtca ggacaggagg atgaactcag
     6001 gcaggcctct cgctcccagc agactacctt acacctgttt gagaagcact ggccaatcag
     6061 ccaacggtgc gaacagcagg ggggcggatc cccatcttca gaccggaatc cctggcggga
     6121 tcctgttcat tccttggctc tctctgtaaa cacagtgaat tggcatttaa tggaaaggct
     6181 actttggaac tctccctgct aagctaagac ggtggcaact cccatattgt ctcaggaaaa
     6241 gttttgttcc agctaggctt ggtggcacac tctcgtgatg ccacgcagtg gatcactgag
     6301 tccagagctt tgtagacgct gaccaccacc cctcccccgc cccgccaaaa ataaaaaagt
     6361 tagctttggg agctgctcca cacctggcta ttttagcttt gtgtgtaatc atagcaagca
     6421 gaggtagagg gatttatgca gcgttgatga ctgccatttt cactgaatgc ccttgttgaa
     6481 ctaagagctt tctgctcagc tggatggccc gggaacttta catagccccc ccccccccca
     6541 aagtctgaac catgtggggg ccttgctcta caccaacaca gaaggcttcc tgaagtgtaa
     6601 gggagaagat actgggcaga ggtgggagcc tgatcgaatg aacaaagagc caggtgtctt
     6661 tctcagatcc tcacccccat gttttcagtg cagaagccct accaaccaca cacagctcat
     6721 ccatgcggct cagccatgct ggtctctccg aggtacccag atagctgcac ccctctgctc
     6781 cccttgctca gcagcttgct ctagctgaag atcaggccca gcatcctctg cccttgaaga
     6841 gcccagaggg ttctacagga tggaattaag ttctgaaaga ttaggtgttg acagccagcc
     6901 tgtatttttg tgcacccatc tcagggacca ccccggaaag cttgtgaatc tcccactctt
     6961 caggagccat ttctccttag caagaacaag atcacaagag acatcacaca tcaccccttt
     7021 agggagttac tttctacctg ctggcaaggt tggtatgaga gttgatttct aaccccaatg
     7081 ggctggctga tacttagcag ggctcttgag gcacgttcaa ccccttcagg gtaaccagag
     7141 tacctaggac cacttgcctg accctagctg tgcagtccag aagagccagg gaggctccca
     7201 gtcctccccg tgttggctgc aatgtcactg ctggtgaggg agactcttgg tcccaccttc
     7261 ccatcctaac ggctgggttc ctgctgatca taagaccaga tgaaggtcat tggtgttccc
     7321 ctatccaaag ccctttgttt ttcttactgt ggaggtgtga gagtccagtg tgtatggaga
     7381 tatatgtaca taagtgtatg aacatagacc ttgtgtgtgc attatagatc tatatacatg
     7441 taagtgtatc ctactccatc agacctggtg tgtgctgttc cttagcacac actgtggtct
     7501 ccagctttgc aaggaaatca ccctggaccc atctgcagga gccaccaggg gccatctgga
     7561 gaagggcgat cctttggcag tagacaccac agctcctctt tcagtcccta tcttagacac
     7621 agcctctgtt gccctggccg ttggccttgc tgcatgagaa gacagctgct tcctcctcta
     7681 ccctgtaatt attcttttta caattgagtg ccttaataat ggtttacaaa tactgtgtat
     7741 ttatgcgcaa ccgttcagct ctcgtctttc gaggctgggt acttttgtct ggtcctggtg
     7801 gttaagatta gcacgtgagt tcctccctac ccccatccac ttgtgttaat ctgctctgca
     7861 gttgacactg tgggtcctga ctactccaca gagcctgcta gaaactcggc tgcttggtcc
     7921 ccgcaggcca tgcctgcatg catcagcaca caccgcagcc cgaggtagcc ggtgagggac
     7981 atgatttggt ttgccaggta gcacaggggt ggtgcaggac cagtactccc tgaaccacag
     8041 tccaagacct ccccttagcc cctcaaggtc accctctagt ttatagaggc ttgccacccc
     8101 ctaacaccct tcacactccc tcctcctctt ctgcctgtgt cctgagctcc ttgctgcaaa
     8161 tcatggggta cagctcaccc cagaggagcc tcaccagact gcatccttca cctttcaaag
     8221 gccactggca ccgggttccc tcgttgagtc acaactttga ttttttttta attgtttttc
     8281 tccttgtttt cttttttaat atatatatat tatatattta aaaggcagta tctttttgta
     8341 ctgtgaattt tcagtagaag aggcatagtg cacttttttt tttacttctg ttggtgtgta
     8401 ctgtatatat atatagtctg cgcgcttctc gtgatgagaa taaacacttc gtttataaa
//
