LOCUS       NM_001160366            2728 bp    mRNA    linear   ROD 30-APR-2024
DEFINITION  Mus musculus scavenger receptor cysteine rich family, 4 domains
            (Ssc4d), mRNA.
ACCESSION   NM_001160366 XM_355648 XM_916633
VERSION     NM_001160366.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 2728)
  AUTHORS   Adams,D.J., Barlas,B., McIntyre,R.E., Salguero,I., van der
            Weyden,L., Barros,A., Vicente,J.R., Karimpour,N., Haider,A.,
            Ranzani,M., Turner,G., Thompson,N.A., Harle,V., Olvera-Leon,R.,
            Robles-Espinoza,C.D., Speak,A.O., Geisler,N., Weninger,W.J.,
            Geyer,S.H., Hewinson,J., Karp,N.A., Fu,B., Yang,F., Kozik,Z.,
            Choudhary,J., Yu,L., van Ruiten,M.S., Rowland,B.D., Lelliott,C.J.,
            Del Castillo Velasco-Herrera,M., Verstraten,R., Bruckner,L.,
            Henssen,A.G., Rooimans,M.A., de Lange,J., Mohun,T.J., Arends,M.J.,
            Kentistou,K.A., Coelho,P.A., Zhao,Y., Zecchini,H., Perry,J.R.B.,
            Jackson,S.P. and Balmus,G.
  CONSRTM   Sanger Mouse Genetics Project
  TITLE     Genetic determinants of micronucleus formation in vivo
  JOURNAL   Nature 627 (8002), 130-136 (2024)
   PUBMED   38355793
REFERENCE   2  (bases 1 to 2728)
  AUTHORS   Kumar,V., Kim,K., Joseph,C., Thomas,L.C., Hong,H. and
            Takahashi,J.S.
  TITLE     Second-generation high-throughput forward genetic screen in mice to
            isolate subtle behavioral mutants
  JOURNAL   Proc Natl Acad Sci U S A 108 Suppl 3 (Suppl 3), 15557-15564 (2011)
   PUBMED   21896739
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC087420.4, W34161.1, BC117747.1 and AI326785.1.
            
            [WARNING] On Jul 22, 2024 this sequence was replaced by
            NM_001160366.2.
            
            On or before May 22, 2009 this sequence version replaced
            XM_916633.2, XM_355648.5.
            
            Sequence Note: This RefSeq record was created from transcript and
            genomic sequence data to make the sequence consistent with the
            reference genome assembly. The genomic coordinates used for the
            transcript record were based on transcript alignments.
            
            ##Evidence-Data-START##
            RNAseq introns :: single sample supports all introns SAMN01164137,
                              SAMN01164138 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-215               AC087420.4         20440-20654         c
            216-533             W34161.1           39-356
            534-2252            BC117747.1         41-1759
            2253-2605           AI326785.1         124-476             c
            2606-2606           AC087420.4         6519-6519           c
            2607-2728           AI326785.1         1-122               c
FEATURES             Location/Qualifiers
     source          1..2728
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="5"
                     /map="5 75.6 cM"
     gene            1..2728
                     /gene="Ssc4d"
                     /gene_synonym="C330016E03Rik; S4D-SRCRB; SRCRB-S4D;
                     Srcrb4d"
                     /note="scavenger receptor cysteine rich family, 4 domains"
                     /db_xref="GeneID:109267"
                     /db_xref="MGI:MGI:1924709"
     exon            1..215
                     /gene="Ssc4d"
                     /gene_synonym="C330016E03Rik; S4D-SRCRB; SRCRB-S4D;
                     Srcrb4d"
                     /inference="alignment:Splign:2.1.0"
     exon            216..460
                     /gene="Ssc4d"
                     /gene_synonym="C330016E03Rik; S4D-SRCRB; SRCRB-S4D;
                     Srcrb4d"
                     /inference="alignment:Splign:2.1.0"
     exon            461..496
                     /gene="Ssc4d"
                     /gene_synonym="C330016E03Rik; S4D-SRCRB; SRCRB-S4D;
                     Srcrb4d"
                     /inference="alignment:Splign:2.1.0"
     exon            497..802
                     /gene="Ssc4d"
                     /gene_synonym="C330016E03Rik; S4D-SRCRB; SRCRB-S4D;
                     Srcrb4d"
                     /inference="alignment:Splign:2.1.0"
     exon            803..880
                     /gene="Ssc4d"
                     /gene_synonym="C330016E03Rik; S4D-SRCRB; SRCRB-S4D;
                     Srcrb4d"
                     /inference="alignment:Splign:2.1.0"
     exon            881..1195
                     /gene="Ssc4d"
                     /gene_synonym="C330016E03Rik; S4D-SRCRB; SRCRB-S4D;
                     Srcrb4d"
                     /inference="alignment:Splign:2.1.0"
     exon            1196..1273
                     /gene="Ssc4d"
                     /gene_synonym="C330016E03Rik; S4D-SRCRB; SRCRB-S4D;
                     Srcrb4d"
                     /inference="alignment:Splign:2.1.0"
     exon            1274..1348
                     /gene="Ssc4d"
                     /gene_synonym="C330016E03Rik; S4D-SRCRB; SRCRB-S4D;
                     Srcrb4d"
                     /inference="alignment:Splign:2.1.0"
     exon            1349..1660
                     /gene="Ssc4d"
                     /gene_synonym="C330016E03Rik; S4D-SRCRB; SRCRB-S4D;
                     Srcrb4d"
                     /inference="alignment:Splign:2.1.0"
     exon            1661..1738
                     /gene="Ssc4d"
                     /gene_synonym="C330016E03Rik; S4D-SRCRB; SRCRB-S4D;
                     Srcrb4d"
                     /inference="alignment:Splign:2.1.0"
     exon            1739..2724
                     /gene="Ssc4d"
                     /gene_synonym="C330016E03Rik; S4D-SRCRB; SRCRB-S4D;
                     Srcrb4d"
                     /inference="alignment:Splign:2.1.0"
     regulatory      2704..2709
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Ssc4d"
                     /gene_synonym="C330016E03Rik; S4D-SRCRB; SRCRB-S4D;
                     Srcrb4d"
                     /note="hexamer: AATAAA"
     polyA_site      2724
                     /gene="Ssc4d"
                     /gene_synonym="C330016E03Rik; S4D-SRCRB; SRCRB-S4D;
                     Srcrb4d"
                     /note="major polyA site"
ORIGIN      
        1 tgcccccaag gtcaggtggg gacaggctgg ggccaccggc agctccatgg ccaaggacac
       61 tgcctcttct ctccttctag ctacggaaag aaaagaagaa aagtctgtgc tgatctgtat
      121 ctcgggggcc cttccccctc ctaaagtccc tggagcagag gcagtgattg aaacttggat
      181 tatctggagg gaaagaaccc agaacatccc tacagctggc ccaggcagct ggaagtaaac
      241 acgcaggacc ttgagtcaca gatgttccag ctgtgacttc tcctcagatt cttgatggga
      301 ccgtcggaaa ggccatccat tggctggaca cccaaggaag cagagatgca aattggcccc
      361 cagcctgatg gatggagcag gggatggaag cctggggaca ggggtgctgt ccccctgccc
      421 ctctccccag cactgtcctt cctccttctg ttcccactgg ccagtgccct ccagcccact
      481 ccgctgccct ttccagaact gaggctggta gggggcccga gccgctgccg agggcgcctc
      541 gaggtcatgc atagcggctc ctggggcagc gtttgcgacg atgactggga cgttgtagat
      601 gctaacgtgg tgtgtcgtca gctgggctgt ggcctggcat tgccggtgcc acggcccctc
      661 gcctttggcc agggcagagg gcccattttc ctggataatg tggagtgccg cgggcaggaa
      721 gcgtctctga gcgagtgtgg cagcaggggc tggggtgtcc acaactgctt tcactatgaa
      781 gatgtggcag tcctgtgtga tgaattcttg cacacacagc ccccaacaag gaaggtgtta
      841 accagtatgg cacccgctac agccctccaa aatggaaaag gtgagggcag tgtgcgtctg
      901 gtgggcggcg ccagcccgtg tcaaggccga gtggagattc tgcatggtgg cgtctggggc
      961 actgtatgcg acgatgactg ggggctgcag gatgctgctg ttgtgtgccg ccagctgggc
     1021 tgtggggtcg ccttggccgc caccactaat gcctttttcg gctatggtac cgggcatatc
     1081 ctgctggaca atgttcactg cgaaggtggc gagccccgcc tggcagcctg ccagagccta
     1141 ggctggggcg tgcacaactg cggacaccac gaggatgctg gggtgctctg tgcagttcta
     1201 agccctccga cttccacagc tctgcctccg tctgtcacaa aagaagactg ggcacggcac
     1261 actgggccag cagctacagg agttggtgcc tcaccttcca gggacactgt gtggctgacg
     1321 acagcagccc gggcctcagg gaagaaaagc ggaaggctga ggctggtcgg gggcccgagc
     1381 ccgtgccgcg gccgcgtgga ggtgctgtac gccgggggtt ggggcaccgt gtgcgacgat
     1441 gactgggact tcgcggacgc gcgggtggcc tgtcgcgagg cgggttgcgg gcccgcgcta
     1501 ggcgccacgg gccttggtca ttttggctat ggccgaggcc ctgtgctgct agacaacgta
     1561 ggctgcaccg gtactgaggc ccgcctcagc gactgcttcc atctgggctg gggacagcac
     1621 aactgcggcc accacgaaga cgccggagcg ctttgtgcag gcccagagga actgggactc
     1681 caagtccagc aggctggttc tgagaccacc cgaatgccca gtcctcggcc cagagatggg
     1741 cacctccgtc tggctagtgg aacacaccga tgtgaggggc gcgtagaact cttcctagga
     1801 caacggtggg gcactgtttg tgatgatgcc tgggacctac gggcagccat tgtcctgtgc
     1861 cgtcagctgg gatgtggcca ggctctcgca gccccgggag aggcccactt tggcccaggc
     1921 cgaggcccaa tcctcttgga caatgtcaaa tgccgaggag atgagagcac cttgctactg
     1981 tgctctcata tccgctggga tgtccacaac tgtgaccaca gcgaggatgc cagtgtcttg
     2041 tgccagccat tgtgacccag atggctctgt actccatacc atatcaaagg agcctatgag
     2101 gaactgcctg tcctttccca ggatgccttc ctatgatagc tcgggttcct ggtacccctt
     2161 tctccccgtg catgggagag atgcagtacc tgcccgagtc ctcttactgt gtgtcccgag
     2221 actgttatca cctgcggaag gcccaataca gtgaacatag caatgttttg ctcagccaaa
     2281 tcagaaaatg tgagagaata acccacttct ctttggggga actcatatag tacccccaat
     2341 ccttcccttc tgcacccaca tccatgaggc ttgggctgtc tgtaaatgcc ttcaaaccct
     2401 taccgtgacc tctcttggtc tcctgctaaa agtggggaga caaaggggtt ggggtgctct
     2461 tttctataga ctggcagggg actgcagaag aaccaggcca tcaccttccc tgctgggtga
     2521 ggacctggac tcagatggtg ctccgctgaa caagggggct gcaggggcca aaacagggac
     2581 cagaggagcc cttcctgcag cttctctgat ttccactgcc cccccccccc cagcacagag
     2641 cctccatttt gcagtaacaa agaaccctgg aggcccatag ccactgtcct taggtgccaa
     2701 gtcaataaag cattatctcc cccaaaaa
//
